Mary S. McPeek - Publications

Affiliations: 
University of Chicago, Chicago, IL 
Area:
Statistics, Genetics, Biostatistics Biology

52 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2024 Akinbiyi T, McPeek MS, Abney M. ADELLE: A global testing method for Trans-eQTL mapping. Biorxiv : the Preprint Server For Biology. PMID 38464248 DOI: 10.1101/2024.02.24.581871  0.363
2023 Mbatchou J, McPeek MS. JASPER: fast, powerful, multitrait association testing in structured samples gives insight on pleiotropy in gene expression. Biorxiv : the Preprint Server For Biology. PMID 38187553 DOI: 10.1101/2023.12.18.571948  0.429
2023 Mbatchou J, Abney M, McPeek MS. BRASS: Permutation methods for binary traits in genetic association studies with structured samples. Plos Genetics. 19: e1011020. PMID 37934792 DOI: 10.1371/journal.pgen.1011020  0.499
2018 Wang M, Roux F, Bartoli C, Huard-Chauveau C, Meyer C, Lee H, Roby D, McPeek MS, Bergelson J. Two-way mixed-effects methods for joint association analysis using both host and pathogen genomes. Proceedings of the National Academy of Sciences of the United States of America. PMID 29848634 DOI: 10.1073/Pnas.1710980115  0.448
2018 Wu X, McPeek MS. L-GATOR: Genetic Association Testing for a Longitudinally Measured Quantitative Trait in Samples with Related Individuals. American Journal of Human Genetics. 102: 574-591. PMID 29625022 DOI: 10.1016/J.Ajhg.2018.02.016  0.485
2016 Zhong S, Jiang D, McPeek MS. CERAMIC: Case-Control Association Testing in Samples with Related Individuals, Based on Retrospective Mixed Model Analysis with Adjustment for Covariates. Plos Genetics. 12: e1006329. PMID 27695091 DOI: 10.1371/Journal.Pgen.1006329  0.682
2016 Wang M, Jakobsdottir J, Smith AV, McPeek MS. G-STRATEGY: Optimal Selection of Individuals for Sequencing in Genetic Association Studies. Genetic Epidemiology. PMID 27256766 DOI: 10.1002/Gepi.21982  0.417
2016 Jiang D, Zhong S, McPeek MS. Retrospective Binary-Trait Association Test Elucidates Genetic Architecture of Crohn Disease. American Journal of Human Genetics. PMID 26833331 DOI: 10.1016/J.Ajhg.2015.12.012  0.678
2015 Jiang D, Mbatchou J, McPeek MS. Retrospective Association Analysis of Binary Traits: Overcoming Some Limitations of the Additive Polygenic Model. Human Heredity. 80: 187-95. PMID 27576759 DOI: 10.1159/000446957  0.687
2015 Dudbridge F, Newcombe PJ, Ioannidis JPA, Génin E, Clerget-Darpoux F, Dandine-Roulland C, Perdry H, Ott J, Jiang D, Mbatchou J, McPeek MS, Visscher PM, Wray NR, Mengensatzproduktion S, Stückle D. Author and Subject Index Human Heredity. 80: 207-207. DOI: 10.1159/000443902  0.459
2014 Jiang D, McPeek MS. Robust rare variant association testing for quantitative traits in samples with related individuals. Genetic Epidemiology. 38: 10-20. PMID 24248908 DOI: 10.1002/Gepi.21775  0.656
2013 Jakobsdottir J, McPeek MS. MASTOR: mixed-model association mapping of quantitative traits in samples with related individuals. American Journal of Human Genetics. 92: 652-66. PMID 23643379 DOI: 10.1016/J.Ajhg.2013.03.014  0.547
2012 McPeek MS. BLUP genotype imputation for case-control association testing with related individuals and missing data. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 19: 756-65. PMID 22697245 DOI: 10.1089/Cmb.2012.0024  0.513
2012 Thornton T, Zhang Q, Cai X, Ober C, McPeek MS. XM: association testing on the X-chromosome in case-control samples with related individuals. Genetic Epidemiology. 36: 438-50. PMID 22552845 DOI: 10.1002/Gepi.21638  0.671
2010 Thornton T, McPeek MS. ROADTRIPS: case-control association testing with partially or completely unknown population and pedigree structure. American Journal of Human Genetics. 86: 172-84. PMID 20137780 DOI: 10.1016/J.Ajhg.2010.01.001  0.688
2009 Wang Z, McPeek MS. An Incomplete-Data Quasi-likelihood Approach to Haplotype-Based Genetic Association Studies on Related Individuals. Journal of the American Statistical Association. 104: 1251-1260. PMID 20428335 DOI: 10.1198/Jasa.2009.Tm08507  0.647
2009 Zhang J, Niyogi P, McPeek MS. Laplacian eigenfunctions learn population structure. Plos One. 4: e7928. PMID 19956572 DOI: 10.1371/Journal.Pone.0007928  0.4
2009 Wang Z, McPeek MS. ATRIUM: testing untyped SNPs in case-control association studies with related individuals. American Journal of Human Genetics. 85: 667-78. PMID 19913122 DOI: 10.1016/J.Ajhg.2009.10.006  0.626
2007 Thornton T, McPeek MS. Case-control association testing with related individuals: a more powerful quasi-likelihood score test. American Journal of Human Genetics. 81: 321-37. PMID 17668381 DOI: 10.1086/519497  0.682
2007 Pluzhnikov A, Nolan DK, Tan Z, McPeek MS, Ober C. Correlation of intergenerational family sizes suggests a genetic component of reproductive fitness. American Journal of Human Genetics. 81: 165-9. PMID 17564973 DOI: 10.1086/518446  0.382
2007 Tong L, Mets L, McPeek MS. Likelihood-based inference for multi-color optical mapping. Statistical Applications in Genetics and Molecular Biology. 6: Article5. PMID 17402920 DOI: 10.2202/1544-6115.1266  0.587
2007 Zheng M, McPeek MS. Multipoint linkage-disequilibrium mapping with haplotype-block structure. American Journal of Human Genetics. 80: 112-25. PMID 17160899 DOI: 10.1086/510685  0.689
2006 Armstrong NJ, McPeek MS, Speed TP. Incorporating interference into linkage analysis for experimental crosses. Biostatistics (Oxford, England). 7: 374-86. PMID 16354713 DOI: 10.1093/Biostatistics/Kxj012  0.463
2005 Zhang J, Schneider D, Ober C, McPeek MS. Multilocus linkage disequilibrium mapping by the decay of haplotype sharing with samples of related individuals. Genetic Epidemiology. 29: 128-40. PMID 16049966 DOI: 10.1002/Gepi.20081  0.539
2004 Bourgain C, Abney M, Schneider D, Ober C, McPeek MS. Testing for Hardy-Weinberg equilibrium in samples with related individuals. Genetics. 168: 2349-61. PMID 15371359 DOI: 10.1534/Genetics.104.031617  0.426
2004 Weiss LA, Veenstra-Vanderweele J, Newman DL, Kim SJ, Dytch H, McPeek MS, Cheng S, Ober C, Cook EH, Abney M. Genome-wide association study identifies ITGB3 as a QTL for whole blood serotonin. European Journal of Human Genetics : Ejhg. 12: 949-54. PMID 15292919 DOI: 10.1038/Sj.Ejhg.5201239  0.42
2004 McPeek MS, Wu X, Ober C. Best linear unbiased allele-frequency estimation in complex pedigrees. Biometrics. 60: 359-67. PMID 15180661 DOI: 10.1111/J.0006-341X.2004.00180.X  0.408
2004 Newman DL, Hoffjan S, Bourgain C, Abney M, Nicolae RI, Profits ET, Grow MA, Walker K, Steiner L, Parry R, Reynolds R, McPeek MS, Cheng S, Ober C. Are common disease susceptibility alleles the same in outbred and founder populations? European Journal of Human Genetics : Ejhg. 12: 584-90. PMID 15100713 DOI: 10.1038/Sj.Ejhg.5201191  0.399
2004 Zheng M, McPeek MS. Assessment of goodness of fit of models for block haplotype structure Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 2983: 152.  0.607
2004 Zheng M, McPeek MS. Parametric Bootstrap for Assessment of Goodness of Fit of Models for Block Haplotype Structure Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 2983: 113-123.  0.634
2003 Bourgain C, Hoffjan S, Nicolae R, Newman D, Steiner L, Walker K, Reynolds R, Ober C, McPeek MS. Novel case-control test in a founder population identifies P-selectin as an atopy-susceptibility locus. American Journal of Human Genetics. 73: 612-26. PMID 12929084 DOI: 10.1086/378208  0.467
2003 Newman DL, Abney M, Dytch H, Parry R, McPeek MS, Ober C. Major loci influencing serum triglyceride levels on 2q14 and 9p21 localized by homozygosity-by-descent mapping in a large Hutterite pedigree. Human Molecular Genetics. 12: 137-44. PMID 12499394 DOI: 10.1093/Hmg/Ddg012  0.4
2002 Sun L, Wilder K, McPeek MS. Enhanced pedigree error detection. Human Heredity. 54: 99-110. PMID 12566741 DOI: 10.1159/000067666  0.379
2002 Abney M, Ober C, McPeek MS. Quantitative-trait homozygosity and association mapping and empirical genomewide significance in large, complex pedigrees: fasting serum-insulin level in the Hutterites. American Journal of Human Genetics. 70: 920-34. PMID 11880950 DOI: 10.1086/339705  0.545
2002 Sun L, Cox NJ, McPeek MS. A statistical method for identification of polymorphisms that explain a linkage result. American Journal of Human Genetics. 70: 399-411. PMID 11791210 DOI: 10.1086/338660  0.451
2001 Sun L, Abney M, McPeek MS. Detection of mis-specified relationships in inbred and outbred pedigrees. Genetic Epidemiology. 21: S36-41. PMID 11793699 DOI: 10.1002/Gepi.2001.21.S1.S36  0.365
2001 Newman DL, Abney M, McPeek MS, Ober C, Cox NJ. The importance of genealogy in determining genetic associations with complex traits. American Journal of Human Genetics. 69: 1146-8. PMID 11590549 DOI: 10.1086/323659  0.42
2001 Ober C, Abney M, McPeek MS. The genetic dissection of complex traits in a founder population. American Journal of Human Genetics. 69: 1068-79. PMID 11590547 DOI: 10.1086/324025  0.457
2001 Abney M, McPeek MS, Ober C. Broad and narrow heritabilities of quantitative traits in a founder population. American Journal of Human Genetics. 68: 1302-7. PMID 11309690 DOI: 10.1086/320112  0.445
2000 McPeek MS. From mouse to human: fine mapping of quantitative trait loci in a model organism. Proceedings of the National Academy of Sciences of the United States of America. 97: 12389-90. PMID 11050190 DOI: 10.1073/Pnas.240463597  0.452
2000 McPeek MS, Sun L. Statistical tests for detection of misspecified relationships by use of genome-screen data. American Journal of Human Genetics. 66: 1076-94. PMID 10712219 DOI: 10.1086/302800  0.47
2000 Abney M, McPeek MS, Ober C. Estimation of variance components of quantitative traits in inbred populations. American Journal of Human Genetics. 66: 629-50. PMID 10677322 DOI: 10.1086/302759  0.43
2000 Girardet A, McPeek MS, Leeflang EP, Munier F, Arnheim N, Claustres M, Pellestor F. Meiotic segregation analysis of RB1 alleles in retinoblastoma pedigrees by use of single-sperm typing. American Journal of Human Genetics. 66: 167-75. PMID 10631148 DOI: 10.1086/302715  0.386
1999 McPeek MS, Strahs A. Assessment of linkage disequilibrium by the decay of haplotype sharing, with application to fine-scale genetic mapping. American Journal of Human Genetics. 65: 858-75. PMID 10445904 DOI: 10.1086/302537  0.735
1999 Grewal RP, Cancel G, Leeflang EP, Dürr A, McPeek MS, Draghinas D, Yao X, Stevanin G, Alnot MO, Brice A, Arnheim N. French Machado-Joseph disease patients do not exhibit gametic segregation distortion: a sperm typing analysis. Human Molecular Genetics. 8: 1779-84. PMID 10441343 DOI: 10.1093/Hmg/8.9.1779  0.375
1999 McPeek MS. Optimal allele-sharing statistics for genetic mapping using affected relatives. Genetic Epidemiology. 16: 225-49. PMID 10096687 DOI: 10.1002/(Sici)1098-2272(1999)16:3<225::Aid-Gepi1>3.0.Co;2-#  0.487
1996 Leeflang EP, McPeek MS, Arnheim N. Analysis of meiotic segregation, using single-sperm typing: meiotic drive at the myotonic dystrophy locus. American Journal of Human Genetics. 59: 896-904. PMID 8808606  0.369
1995 Zhao H, Speed TP, McPeek MS. Statistical analysis of crossover interference using the chi-square model. Genetics. 139: 1045-56. PMID 7713407  0.326
1995 McPeek MS, Speed TP. Modeling interference in genetic recombination. Genetics. 139: 1031-44. PMID 7713406  0.318
1993 Evans SN, Mcpeek MS, Speed TP. A Characterization of Crossover Models That Possess Map Functions Theoretical Population Biology. 43: 80-90. DOI: 10.1006/Tpbi.1993.1004  0.398
1992 Guerra R, McPeek MS, Speed TP, Stewart PM. A Bayesian analysis for mapping from radiation hybrid data. Cytogenetics and Cell Genetics. 59: 104-6. PMID 1737469 DOI: 10.1159/000133214  0.331
1992 Speed TP, McPeek MS, Evans SN. Robustness of the no-interference model for ordering genetic markers. Proceedings of the National Academy of Sciences of the United States of America. 89: 3103-6. PMID 1557418 DOI: 10.1073/Pnas.89.7.3103  0.406
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