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Thomas A. Binkowski, Ph.D. - Publications

Affiliations: 
2004 University of Illinois at Chicago, Chicago, IL, United States 
Area:
Biomedical Engineering, General Biophysics
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18 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2014 Binkowski TA, Jiang W, Roux B, Anderson WF, Joachimiak A. Virtual high-throughput ligand screening. Methods in Molecular Biology (Clifton, N.J.). 1140: 251-261. PMID 24590723 DOI: 10.1007/978-1-4939-0354-2_19  0.428
2011 Kim Y, Joachimiak G, Ye Z, Binkowski TA, Zhang R, Gornicki P, Callahan SM, Hess WR, Haselkorn R, Joachimiak A. Structure of transcription factor HetR required for heterocyst differentiation in cyanobacteria. Proceedings of the National Academy of Sciences of the United States of America. 108: 10109-14. PMID 21628585 DOI: 10.1073/Pnas.1106840108  0.388
2011 Kern J, Wilton R, Zhang R, Binkowski TA, Joachimiak A, Schneewind O. Structure of surface layer homology (SLH) domains from Bacillus anthracis surface array protein. The Journal of Biological Chemistry. 286: 26042-9. PMID 21572039 DOI: 10.1074/Jbc.M111.248070  0.37
2010 Binkowski TA, Cuff M, Nocek B, Chang C, Joachimiak A. Assisted assignment of ligands corresponding to unknown electron density. Journal of Structural and Functional Genomics. 11: 21-30. PMID 20091237 DOI: 10.1007/S10969-010-9078-7  0.354
2009 Kim Y, Li H, Binkowski TA, Holzle D, Joachimiak A. Crystal structure of fatty acid/phospholipid synthesis protein PlsX from Enterococcus faecalis. Journal of Structural and Functional Genomics. 10: 157-63. PMID 19058030 DOI: 10.1007/s10969-008-9052-9  0.375
2008 Liang J, Tseng YY, Dundas J, Binkowski TA, Joachimiak A, Ouyang Z, Adamian L. Chapter 4. Predicting and characterizing protein functions through matching geometric and evolutionary patterns of binding surfaces. Advances in Protein Chemistry and Structural Biology. 75: 107-41. PMID 20731991 DOI: 10.1016/S0065-3233(07)75004-0  0.578
2008 Binkowski TA, Joachimiak A. Protein functional surfaces: global shape matching and local spatial alignments of ligand binding sites. Bmc Structural Biology. 8: 45. PMID 18954462 DOI: 10.1186/1472-6807-8-45  0.542
2008 Kim Y, Quartey P, Li H, Volkart L, Hatzos C, Chang C, Nocek B, Cuff M, Osipiuk J, Tan K, Fan Y, Bigelow L, Maltseva N, Wu R, Borovilos M, ... ... Binkowski TA, et al. Large-scale evaluation of protein reductive methylation for improving protein crystallization. Nature Methods. 5: 853-4. PMID 18825126 DOI: 10.1038/Nmeth1008-853  0.329
2008 Qiu Y, Zhang R, Binkowski TA, Tereshko V, Joachimiak A, Kossiakoff A. The 1.38 A crystal structure of DmsD protein from Salmonella typhimurium, a proofreading chaperone on the Tat pathway. Proteins. 71: 525-33. PMID 18175314 DOI: 10.1002/Prot.21828  0.516
2008 Qiu Y, Zhang R, Binkowski TA, Tereshko V, Joachimiak A, Kossiakoff A. The 1.38 Å crystal structure of DmsD protein from Salmonella typhimurium, a proofreading chaperone on the Tat pathway Proteins: Structure, Function and Genetics. 71: 525-533. DOI: 10.1002/prot.21828  0.305
2007 Dundas J, Binkowski TA, DasGupta B, Liang J. Topology independent protein structural alignment. Bmc Bioinformatics. 8: 388. PMID 17937816 DOI: 10.1186/1471-2105-8-388  0.655
2005 Binkowski TA, Joachimiak A, Liang J. Protein surface analysis for function annotation in high-throughput structural genomics pipeline. Protein Science : a Publication of the Protein Society. 14: 2972-81. PMID 16322579 DOI: 10.1110/Ps.051759005  0.659
2004 Binkowski TA, DasGupta B, Liang J. Order independent structural alignment of circularly permuted proteins. Conference Proceedings : ... Annual International Conference of the Ieee Engineering in Medicine and Biology Society. Ieee Engineering in Medicine and Biology Society. Annual Conference. 4: 2781-4. PMID 17270854 DOI: 10.1109/IEMBS.2004.1403795  0.607
2004 Binkowski TA, Freeman P, Liang J. pvSOAR: detecting similar surface patterns of pocket and void surfaces of amino acid residues on proteins. Nucleic Acids Research. 32: W555-8. PMID 15215448 DOI: 10.1093/Nar/Gkh390  0.658
2004 Stitziel NO, Binkowski TA, Tseng YY, Kasif S, Liang J. topoSNP: a topographic database of non-synonymous single nucleotide polymorphisms with and without known disease association. Nucleic Acids Research. 32: D520-2. PMID 14681472 DOI: 10.1093/Nar/Gkh104  0.631
2003 Binkowski TA, Adamian L, Liang J. Inferring functional relationships of proteins from local sequence and spatial surface patterns. Journal of Molecular Biology. 332: 505-26. PMID 12948498 DOI: 10.1016/S0022-2836(03)00882-9  0.649
2003 Binkowski TA, Naghibzadeh S, Liang J. CASTp: Computed Atlas of Surface Topography of proteins. Nucleic Acids Research. 31: 3352-5. PMID 12824325 DOI: 10.1093/Nar/Gkg512  0.546
2003 Adamian L, Jackups R, Binkowski TA, Liang J. Higher-order interhelical spatial interactions in membrane proteins. Journal of Molecular Biology. 327: 251-72. PMID 12614623 DOI: 10.1016/S0022-2836(03)00041-X  0.631
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