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Jinfeng Zhang, Ph.D. - Publications

Affiliations: 
2004 University of Illinois at Chicago, Chicago, IL, United States 
Area:
General Biophysics, Biostatistics Biology, Molecular Biology
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18 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2018 Yu K, Lung PY, Zhao T, Zhao P, Tseng YY, Zhang J. Automatic extraction of protein-protein interactions using grammatical relationship graph. Bmc Medical Informatics and Decision Making. 18: 42. PMID 30066644 DOI: 10.1186/S12911-018-0628-4  0.558
2016 Tang K, Zhang J, Liang J. Distance-Guided Forward and Backward Chain-Growth Monte Carlo Method for Conformational Sampling and Structural Prediction of Antibody CDR-H3 Loops. Journal of Chemical Theory and Computation. PMID 27996262 DOI: 10.1021/Acs.Jctc.6B00845  0.413
2016 Ni C, Yan M, Zhang J, Cheng R, Liang J, Deng D, Wang Z, Li M, Yao Z. A novel mutation in TRPV3 gene causes atypical familial Olmsted syndrome. Scientific Reports. 6: 21815. PMID 26902751 DOI: 10.1038/srep21815  0.302
2015 Zhang J, Liu Z, Liang J, Wu J, Cheng F, Wang X. Three genes encoding AOP2, a protein involved in aliphatic glucosinolate biosynthesis, are differentially expressed in Brassica rapa. Journal of Experimental Botany. PMID 26188204 DOI: 10.1093/Jxb/Erv331  0.322
2015 Tang K, Wong SW, Liu JS, Zhang J, Liang J. Conformational sampling and structure prediction of multiple interacting loops in soluble and β-barrel membrane proteins using multi-loop distance-guided chain-growth Monte Carlo method. Bioinformatics (Oxford, England). PMID 25861965 DOI: 10.1093/Bioinformatics/Btv198  0.438
2014 Tang K, Zhang J, Liang J. Fast protein loop sampling and structure prediction using distance-guided sequential chain-growth Monte Carlo method. Plos Computational Biology. 10: e1003539. PMID 24763317 DOI: 10.1371/Journal.Pcbi.1003539  0.451
2014 Tang K, Zhang J, Liang J. Conformational Sampling and Structure Prediction of Multi-Loops in Proteins using Distance-Guided Sequential Chain-Growth Monte Carlo Method Biophysical Journal. 106: 53a. DOI: 10.1016/J.Bpj.2013.11.374  0.451
2012 Tang K, Zhang J, Liang J. Efficient Protein Loop Generation using Distance-Guided Sequential Monte Carlo Method Biophysical Journal. 102: 185a. DOI: 10.1016/J.Bpj.2011.11.1007  0.426
2011 Liu W, Srivastava A, Zhang J. A mathematical framework for protein structure comparison. Plos Computational Biology. 7: e1001075. PMID 21304929 DOI: 10.1371/Journal.Pcbi.1001075  0.303
2011 Tang K, Zhang J, Liang J. Protein Loop Modeling using Distance-Guided Sequential Monte Carlo Method Biophysical Journal. 100: 215a. DOI: 10.1016/J.Bpj.2010.12.1386  0.443
2010 Tang K, Zhang J, Zhang J, Liang J. Accurate Loop Generation of Protein Structures using Distance-Guided Sequential Monte Carlo Sampling Method Biophysical Journal. 98. DOI: 10.1016/J.Bpj.2009.12.2509  0.446
2007 Zhang J, Lin M, Chen R, Liang J, Liu JS. Monte Carlo sampling of near-native structures of proteins with applications. Proteins. 66: 61-8. PMID 17039507 DOI: 10.1002/Prot.21203  0.441
2006 Zhang J, Liu JS. On side-chain conformational entropy of proteins. Plos Computational Biology. 2: e168. PMID 17154716 DOI: 10.1371/Journal.Pcbi.0020168  0.31
2006 Zhang J, Chen R, Liang J. Empirical potential function for simplified protein models: combining contact and local sequence-structure descriptors. Proteins. 63: 949-60. PMID 16477624 DOI: 10.1002/Prot.20809  0.441
2004 Zhang J, Chen R, Liang J. Potential function of simplified protein models for discriminating native proteins from decoys: combining contact interaction and local sequence-dependent geometry. Conference Proceedings : ... Annual International Conference of the Ieee Engineering in Medicine and Biology Society. Ieee Engineering in Medicine and Biology Society. Annual Conference. 4: 2976-9. PMID 17270903 DOI: 10.1109/IEMBS.2004.1403844  0.369
2004 Zhang J, Chen Y, Chen R, Liang J. Importance of chirality and reduced flexibility of protein side chains: a study with square and tetrahedral lattice models. The Journal of Chemical Physics. 121: 592-603. PMID 15260581 DOI: 10.1063/1.1756573  0.414
2003 Zhang J, Chen R, Tang C, Liang J. Origin of scaling behavior of protein packing density: A sequential Monte Carlo study of compact long chain polymers Journal of Chemical Physics. 118: 6102-6109. DOI: 10.1063/1.1554395  0.385
2002 Liang J, Zhang J, Chen R. Statistical geometry of packing defects of lattice chain polymer from enumeration and sequential Monte Carlo method The Journal of Chemical Physics. 117: 3511-3521. DOI: 10.1063/1.1493772  0.408
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