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Stephen S. Yau - Publications

Affiliations: 
University of Illinois at Chicago, Chicago, IL, United States 
Area:
Mathematics
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Year Citation  Score
2024 Guan M, Sun N, Yau SS. Geometric analysis of SARS-CoV-2 variants. Gene. 909: 148291. PMID 38417688 DOI: 10.1016/j.gene.2024.148291  0.339
2023 Fang M, Xu J, Sun N, Yau SS. Generating Minimal Models of H1N1 NS1 Gene Sequences Using Alignment-Based and Alignment-Free Algorithms. Genes. 14. PMID 36672928 DOI: 10.3390/genes14010186  0.325
2022 Guan M, Zhao L, Yau SS. Classification of Protein Sequences by a Novel Alignment-Free Method on Bacterial and Virus Families. Genes. 13. PMID 36292629 DOI: 10.3390/genes13101744  0.407
2022 Sun N, Zhao X, Yau SS. An efficient numerical representation of genome sequence: natural vector with covariance component. Peerj. 10: e13544. PMID 35729905 DOI: 10.7717/peerj.13544  0.415
2022 Dong R, Pei S, Guan M, Yau SC, Yin C, He RL, Yau SS. Full Chromosomal Relationships Between Populations and the Origin of Humans. Frontiers in Genetics. 12: 828805. PMID 35186019 DOI: 10.3389/fgene.2021.828805  0.626
2021 Yin C, Yau SS. Inverted repeats in coronavirus SARS-CoV-2 genome manifest the evolution events. Journal of Theoretical Biology. 110885. PMID 34478743 DOI: 10.1016/j.jtbi.2021.110885  0.575
2021 Sun N, Pei S, He L, Yin C, He RL, Yau SS. Geometric construction of viral genome space and its applications. Computational and Structural Biotechnology Journal. 19: 4226-4234. PMID 34429843 DOI: 10.1016/j.csbj.2021.07.028  0.603
2020 Pei S, Dong R, Bao Y, He RL, Yau SS. Classification of genomic components and prediction of genes of based on subsequence natural vector and support vector machine. Peerj. 8: e9625. PMID 32832270 DOI: 10.7717/peerj.9625  0.491
2020 Dong R, Pei S, Yin C, He RL, Yau SS. Analysis of the Hosts and Transmission Paths of SARS-CoV-2 in the COVID-19 Outbreak. Genes. 11. PMID 32526937 DOI: 10.3390/genes11060637  0.621
2020 He L, Dong R, He RL, Yau SS. Positional Correlation Natural Vector: A Novel Method for Genome Comparison. International Journal of Molecular Sciences. 21. PMID 32485813 DOI: 10.3390/ijms21113859  0.588
2020 Sun N, Dong R, Pei S, Yin C, Yau SS. A New Method Based on Coding Sequence Density to Cluster Bacteria. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. PMID 32392428 DOI: 10.1089/Cmb.2019.0509  0.705
2019 Hoang T, Yin C, Yau SS. Splice sites detection using chaos game representation and neural network. Genomics. PMID 31704313 DOI: 10.1016/J.Ygeno.2019.10.018  0.568
2019 He L, Dong R, He RL, Yau SS. A novel alignment-free method for HIV-1 subtype classification. Infection, Genetics and Evolution : Journal of Molecular Epidemiology and Evolutionary Genetics in Infectious Diseases. 104080. PMID 31683009 DOI: 10.1016/j.meegid.2019.104080  0.427
2019 Pei S, Dong W, Chen X, He RL, Yau SS. Fast and accurate genome comparison using genome images: the Extended Natural Vector Method. Molecular Phylogenetics and Evolution. 106633. PMID 31563612 DOI: 10.1016/j.ympev.2019.106633  0.38
2019 Pei S, Dong R, He RL, Yau SS. Large-Scale Genome Comparison Based on Cumulative Fourier Power and Phase Spectra: Central Moment and Covariance Vector. Computational and Structural Biotechnology Journal. 17: 982-994. PMID 31384399 DOI: 10.1016/j.csbj.2019.07.003  0.557
2019 Dong R, He L, He RL, Yau SS. A Novel Approach to Clustering Genome Sequences Using Inter-nucleotide Covariance. Frontiers in Genetics. 10: 234. PMID 31024610 DOI: 10.3389/fgene.2019.00234  0.592
2019 Wang Y, Tian K, Yau SS. Protein Sequence Classification Using Natural Vector and Convex Hull Method. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. PMID 30762422 DOI: 10.1089/cmb.2018.0216  0.336
2018 Tian K, Zhao X, Zhang Y, Yau S. Comparing protein structures and inferring functions with a novel three-dimensional Yau-Hausdorff method. Journal of Biomolecular Structure & Dynamics. 1-10. PMID 30518311 DOI: 10.1080/07391102.2018.1540359  0.341
2018 Dong R, Zhu Z, Yin C, He RL, Yau SS. A new method to cluster genomes based on cumulative Fourier power spectrum. Gene. PMID 29935353 DOI: 10.1016/J.Gene.2018.06.042  0.679
2018 Chen B, Xie D, Yau SS-, Yau S, Zuo H. 4d $\mathcal{N}=2$ SCFT and singularity theory Part III: Rigid singularity Advances in Theoretical and Mathematical Physics. 22: 1885-1905. DOI: 10.4310/Atmp.2018.V22.N8.A2  0.464
2017 Dong R, Zheng H, Tian K, Yau SC, Mao W, Yu W, Yin C, Yu C, He RL, Yang J, Yau SS. Virus Database and Online Inquiry System Based on Natural Vectors. Evolutionary Bioinformatics Online. 13: 1176934317746667. PMID 29308007 DOI: 10.1177/1176934317746667  0.672
2017 Zhao X, Tian K, He RL, Yau SS. Establishing the phylogeny of Prochlorococcus with a new alignment-free method. Ecology and Evolution. 7: 11057-11065. PMID 29299281 DOI: 10.1002/ece3.3535  0.331
2017 Li Y, He L, Lucy He R, Yau SS. A novel fast vector method for genetic sequence comparison. Scientific Reports. 7: 12226. PMID 28939913 DOI: 10.1038/s41598-017-12493-2  0.403
2017 He L, Li Y, Lucy He R, Yau SS. A novel alignment-free vector method to cluster protein sequences. Journal of Theoretical Biology. PMID 28587743 DOI: 10.1016/j.jtbi.2017.06.002  0.404
2017 Yin C, Yau SS. A coevolution analysis for identifying protein-protein interactions by Fourier transform. Plos One. 12: e0174862. PMID 28430779 DOI: 10.1371/Journal.Pone.0174862  0.59
2017 Chen B, Xie D, Yau S, Yau SS-, Zuo H. 4D $\mathcal{N} = 2$ SCFT and singularity theory. Part II: complete intersection Advances in Theoretical and Mathematical Physics. 21: 121-145. DOI: 10.4310/Atmp.2017.V21.N1.A2  0.461
2016 Hoang T, Yin C, Yau SS. Numerical encoding of DNA sequences by Chaos Game Representation with application in similarity comparison. Genomics. PMID 27538895 DOI: 10.1016/J.Ygeno.2016.08.002  0.621
2016 Li Y, Tian K, Yin C, Lucy He R, Yau SS. Virus classification in 60-dimensional protein space. Molecular Phylogenetics and Evolution. PMID 26988414 DOI: 10.1016/J.Ympev.2016.03.009  0.651
2016 Zhao X, Wan X, He RL, Yau SS. A New Method for Studying the Evolutionary Origin of the SAR11 Clade Marine Bacteria. Molecular Phylogenetics and Evolution. PMID 26926946 DOI: 10.1016/j.ympev.2016.02.015  0.32
2016 Du R, Gao Y, Yau S. On higher dimensional complex Plateau problem Mathematische Zeitschrift. 282: 389-403. DOI: 10.1007/S00209-015-1544-2  0.484
2015 Tian K, Yang X, Kong Q, Yin C, He RL, Yau SS. Two Dimensional Yau-Hausdorff Distance with Applications on Comparison of DNA and Protein Sequences. Plos One. 10: e0136577. PMID 26384293 DOI: 10.1371/Journal.Pone.0136577  0.632
2015 Yin C, Yau SS. An improved model for whole genome phylogenetic analysis by Fourier transform. Journal of Theoretical Biology. 382: 99-110. PMID 26151589 DOI: 10.1016/J.Jtbi.2015.06.033  0.629
2015 Zheng H, Yin C, Hoang T, He RL, Yang J, Yau SS. Ebolavirus classification based on natural vectors. Dna and Cell Biology. 34: 418-28. PMID 25803489 DOI: 10.1089/Dna.2014.2678  0.569
2015 Hoang T, Yin C, Zheng H, Yu C, Lucy He R, Yau SS. A new method to cluster DNA sequences using Fourier power spectrum. Journal of Theoretical Biology. 372: 135-45. PMID 25747773 DOI: 10.1016/J.Jtbi.2015.02.026  0.642
2015 Yau SS, Mao WG, Benson M, He RL. Distinguishing proteins from arbitrary amino acid sequences. Scientific Reports. 5: 7972. PMID 25609314 DOI: 10.1038/srep07972  0.313
2015 Yau S, Zuo H. Complete characterization of isolated homogeneous hypersurface singularities Pacific Journal of Mathematics. 173: 213-224. DOI: 10.2140/Pjm.2015.273.213  0.502
2015 Lin K, Yau S, Zuo H. Plurigenera of compact connected strongly pseudoconvex CR manifolds Science China-Mathematics. 58: 525-530. DOI: 10.1007/S11425-014-4960-6  0.462
2014 Yu C, Deng M, Zheng L, He RL, Yang J, Yau SS. DFA7, a new method to distinguish between intron-containing and intronless genes. Plos One. 9: e101363. PMID 25036549 DOI: 10.1371/Journal.Pone.0101363  0.592
2014 Yin C, Chen Y, Yau SS. A measure of DNA sequence similarity by Fourier Transform with applications on hierarchical clustering. Journal of Theoretical Biology. 359: 18-28. PMID 24911780 DOI: 10.1016/J.Jtbi.2014.05.043  0.62
2014 Yu C, He RL, Yau SS. Viral genome phylogeny based on Lempel-Ziv complexity and Hausdorff distance. Journal of Theoretical Biology. 348: 12-20. PMID 24486229 DOI: 10.1016/J.Jtbi.2014.01.022  0.321
2013 Yu C, Deng M, Cheng SY, Yau SC, He RL, Yau SS. Protein space: a natural method for realizing the nature of protein universe. Journal of Theoretical Biology. 318: 197-204. PMID 23154188 DOI: 10.1016/J.Jtbi.2012.11.005  0.56
2013 Yau S, Zuo H. Characterization of isolated complete intersection singularities with C*-action of dimension n ≥ 2 by means of geometric genus and irregularity Communications in Analysis and Geometry. 21: 509-526. DOI: 10.4310/Cag.2013.V21.N3.A2  0.483
2011 Zhao B, Duan V, Yau SS. A novel clustering method via nucleotide-based Fourier power spectrum analysis. Journal of Theoretical Biology. 279: 83-9. PMID 21443881 DOI: 10.1016/J.Jtbi.2011.03.029  0.52
2011 Deng M, Yu C, Liang Q, He RL, Yau SS. A novel method of characterizing genetic sequences: genome space with biological distance and applications. Plos One. 6: e17293. PMID 21399690 DOI: 10.1371/Journal.Pone.0017293  0.706
2011 Zhao B, He RL, Yau SS. A new distribution vector and its application in genome clustering. Molecular Phylogenetics and Evolution. 59: 438-43. PMID 21385621 DOI: 10.1016/J.Ympev.2011.02.020  0.502
2011 Du R, Luk HS, Yau S. New invariants for complex manifolds and isolated singularities Communications in Analysis and Geometry. 19: 991-1021. DOI: 10.4310/Cag.2011.V19.N5.A7  0.483
2011 Chen I, Lin K, Yau S, Zuo H. Coordinate-free characterization of homogeneous polynomials with isolated singularities Communications in Analysis and Geometry. 19: 661-704. DOI: 10.4310/Cag.2011.V19.N4.A2  0.496
2010 Yu C, Liang Q, Yin C, He RL, Yau SS. A novel construction of genome space with biological geometry. Dna Research : An International Journal For Rapid Publication of Reports On Genes and Genomes. 17: 155-68. PMID 20360268 DOI: 10.1093/Dnares/Dsq008  0.688
2010 Carr K, Murray E, Armah E, He RL, Yau SS. A rapid method for characterization of protein relatedness using feature vectors. Plos One. 5: e9550. PMID 20221427 DOI: 10.1371/Journal.Pone.0009550  0.698
2010 Du R, Gao Y, Yau S. Explicit construction of moduli space of bounded complete Reinhardt domains in $\mathbb{C}^n$ Communications in Analysis and Geometry. 18: 601-626. DOI: 10.4310/Cag.2010.V18.N3.A7  0.497
2010 Du R, Yau S. Local holomorphic De Rham cohomology Communications in Analysis and Geometry. 18: 365-374. DOI: 10.4310/Cag.2010.V18.N2.A4  0.489
2009 Jiang X, Lavenier D, Yau SS. Coding region prediction based on a universal DNA sequence representation method. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 15: 1237-56. PMID 19040362 DOI: 10.1089/cmb.2008.0041  0.321
2009 Du R, Yau S. Higher order Bergman functions and explicit construction of moduli space for complete Reinhardt domains Journal of Differential Geometry. 82: 567-610. DOI: 10.4310/Jdg/1251122546  0.5
2008 Yau SS, Yu C, He R. A protein map and its application. Dna and Cell Biology. 27: 241-50. PMID 18348704 DOI: 10.1089/Dna.2007.0676  0.312
2007 Liu L, Ho YK, Yau S. Prediction of primate splice site using inhomogeneous Markov chain and neural network. Dna and Cell Biology. 26: 477-83. PMID 17630851 DOI: 10.1089/Dna.2007.0583  0.514
2007 Yin C, Yau SS. Prediction of protein coding regions by the 3-base periodicity analysis of a DNA sequence. Journal of Theoretical Biology. 247: 687-94. PMID 17509616 DOI: 10.1016/J.Jtbi.2007.03.038  0.613
2007 Zhou L, Yau S. Efficient association rule mining among both frequent and infrequent items Computers and Mathematics With Applications. 54: 737-749. DOI: 10.1016/J.Camwa.2007.02.010  0.366
2006 Liu L, Ho YK, Yau S. Clustering DNA sequences by feature vectors. Molecular Phylogenetics and Evolution. 41: 64-9. PMID 16843686 DOI: 10.1016/J.Ympev.2006.05.019  0.628
2005 Yin C, Yau SS. A Fourier characteristic of coding sequences: origins and a non-Fourier approximation. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 12: 1153-65. PMID 16305326 DOI: 10.1089/Cmb.2005.12.1153  0.566
2003 Yau SS, Wang J, Niknejad A, Lu C, Jin N, Ho YK. DNA sequence representation without degeneracy. Nucleic Acids Research. 31: 3078-80. PMID 12799435 DOI: 10.1093/Nar/Gkg432  0.581
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