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Daniel A. Colon-Ramos, Ph.D. - Publications

Affiliations: 
2003 Duke University, Durham, NC 
Area:
Molecular Biology, Cell Biology
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28 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Xuan Z, Colón-Ramos DA. The active zone protein CLA-1 (Clarinet) bridges two subsynaptic domains to regulate presynaptic sorting of ATG-9. Autophagy. 1-2. PMID 37389488 DOI: 10.1080/15548627.2023.2229227  0.322
2023 Xuan Z, Yang S, Clark B, Hill SE, Manning L, Colón-Ramos DA. The active zone protein Clarinet regulates synaptic sorting of ATG-9 and presynaptic autophagy. Plos Biology. 21: e3002030. PMID 37053235 DOI: 10.1371/journal.pbio.3002030  0.334
2021 Klionsky DJ, Abdel-Aziz AK, Abdelfatah S, Abdellatif M, Abdoli A, Abel S, Abeliovich H, Abildgaard MH, Abudu YP, Acevedo-Arozena A, Adamopoulos IE, Adeli K, Adolph TE, Adornetto A, Aflaki E, et al. Guidelines for the use and interpretation of assays for monitoring autophagy (4th edition). Autophagy. 1-382. PMID 33634751 DOI: 10.1080/15548627.2020.1797280  0.589
2020 Jang S, Xuan Z, Lagoy RC, Jawerth LM, Gonzalez IJ, Singh M, Prashad S, Kim HS, Patel A, Albrecht DR, Hyman AA, Colón-Ramos DA. Phosphofructokinase Relocalizes into Subcellular Compartments with Liquid-like Properties In Vivo. Biophysical Journal. PMID 32853565 DOI: 10.1016/J.Bpj.2020.08.002  0.365
2020 Fan J, Ji T, Wang K, Huang J, Wang M, Manning L, Dong X, Shi Y, Zhang X, Shao Z, Colón-Ramos DA. A muscle-epidermis-glia signaling axis sustains synaptic specificity during allometric growth in . Elife. 9. PMID 32255430 DOI: 10.7554/Elife.55890  0.329
2020 Hill SE, Colón-Ramos DA. The Journey of the Synaptic Autophagosome: A Cell Biological Perspective. Neuron. 105: 961-973. PMID 32191859 DOI: 10.1016/J.Neuron.2020.01.018  0.388
2019 Hill SE, Colón-Ramos DA. A specific ATG-4 isoform is required for autophagic maturation and clearance in neurons. Autophagy. 1-3. PMID 31291815 DOI: 10.1080/15548627.2019.1632123  0.397
2019 Duncan LH, Moyle MW, Shao L, Sengupta T, Ikegami R, Kumar A, Guo M, Christensen R, Santella A, Bao Z, Shroff H, Mohler W, Colón-Ramos DA. Isotropic Light-Sheet Microscopy and Automated Cell Lineage Analyses to Catalogue Caenorhabditis elegans Embryogenesis with Subcellular Resolution. Journal of Visualized Experiments : Jove. PMID 31233035 DOI: 10.3791/59533  0.327
2019 Hill SE, Kauffman KJ, Krout M, Richmond JE, Melia TJ, Colón-Ramos DA. Maturation and Clearance of Autophagosomes in Neurons Depends on a Specific Cysteine Protease Isoform, ATG-4.2. Developmental Cell. PMID 30880001 DOI: 10.1016/J.Devcel.2019.02.013  0.406
2018 Rhoades JL, Nelson JC, Nwabudike I, Yu SK, McLachlan IG, Madan GK, Abebe E, Powers JR, Colón-Ramos DA, Flavell SW. ASICs Mediate Food Responses in an Enteric Serotonergic Neuron that Controls Foraging Behaviors. Cell. PMID 30580965 DOI: 10.1016/J.Cell.2018.11.023  0.474
2018 Hawk JD, Calvo AC, Liu P, Almoril-Porras A, Aljobeh A, Torruella-Suárez ML, Ren I, Cook N, Greenwood J, Luo L, Wang ZW, Samuel ADT, Colón-Ramos DA. Integration of Plasticity Mechanisms within a Single Sensory Neuron of C. elegans Actuates a Memory. Neuron. PMID 29307713 DOI: 10.1016/J.Neuron.2017.12.027  0.309
2017 Xuan Z, Manning L, Nelson J, Richmond JE, Colón-Ramos DA, Shen K, Kurshan PT. Clarinet (CLA-1), a novel active zone protein required for synaptic vesicle clustering and release. Elife. 6. PMID 29160205 DOI: 10.7554/Elife.29276  0.52
2017 Xuan Z, Manning L, Nelson J, Richmond JE, Colón-Ramos DA, Shen K, Kurshan PT. Author response: Clarinet (CLA-1), a novel active zone protein required for synaptic vesicle clustering and release Elife. DOI: 10.7554/Elife.29276.022  0.334
2016 Colón-Ramos DA. The need to connect: on the cell biology of synapses, behaviors, and networks in science. Molecular Biology of the Cell. 27: 3197-3201. PMID 27799494 DOI: 10.1091/Mbc.E16-07-0507  0.344
2016 Stavoe AK, Hill SE, Hall DH, Colón-Ramos DA. KIF1A/UNC-104 Transports ATG-9 to Regulate Neurodevelopment and Autophagy at Synapses. Developmental Cell. PMID 27396362 DOI: 10.1016/J.Devcel.2016.06.012  0.416
2016 Jang S, Nelson JC, Bend EG, Rodríguez-Laureano L, Tueros FG, Cartagenova L, Underwood K, Jorgensen EM, Colón-Ramos DA. Glycolytic Enzymes Localize to Synapses under Energy Stress to Support Synaptic Function. Neuron. PMID 27068791 DOI: 10.1016/J.Neuron.2016.03.011  0.515
2015 Christensen RP, Bokinsky A, Santella A, Wu Y, Marquina-Solis J, Guo M, Kovacevic I, Kumar A, Winter PW, Tashakkori N, McCreedy E, Liu H, McAuliffe M, Mohler W, Colon-Ramos DA, et al. Untwisting the Caenorhabditis elegans embryo. Elife. 4. PMID 26633880 DOI: 10.7554/Elife.10070  0.323
2015 Christensen R, Bokinsky A, Santella A, Wu Y, Marquina J, Kovacevic I, Kumar A, Winter P, McCreedy E, Mohler W, Bao Z, Colón-Ramos D, Shroff H. An imaging and analysis toolset for the study of Caenorhabditis elegans neurodevelopment Progress in Biomedical Optics and Imaging - Proceedings of Spie. 9334. DOI: 10.1117/12.2082394  0.329
2014 Zhang F, Bhattacharya A, Nelson JC, Abe N, Gordon P, Lloret-Fernandez C, Maicas M, Flames N, Mann RS, Colón-Ramos DA, Hobert O. The LIM and POU homeobox genes ttx-3 and unc-86 act as terminal selectors in distinct cholinergic and serotonergic neuron types. Development (Cambridge, England). 141: 422-35. PMID 24353061 DOI: 10.1242/Dev.099721  0.497
2013 Christensen R, Shao Z, Colón-Ramos DA. The cell biology of synaptic specificity during development. Current Opinion in Neurobiology. 23: 1018-26. PMID 23932598 DOI: 10.1016/J.Conb.2013.07.004  0.357
2012 Stavoe AK, Colón-Ramos DA. Netrin instructs synaptic vesicle clustering through Rac GTPase, MIG-10, and the actin cytoskeleton. The Journal of Cell Biology. 197: 75-88. PMID 22451697 DOI: 10.1083/Jcb.201110127  0.347
2011 Wu Y, Ghitani A, Christensen R, Santella A, Du Z, Rondeau G, Bao Z, Colón-Ramos D, Shroff H. Inverted selective plane illumination microscopy (iSPIM) enables coupled cell identity lineaging and neurodevelopmental imaging in Caenorhabditis elegans. Proceedings of the National Academy of Sciences of the United States of America. 108: 17708-13. PMID 22006307 DOI: 10.1073/Pnas.1108494108  0.316
2009 Colón-Ramos DA. Synapse formation in developing neural circuits. Current Topics in Developmental Biology. 87: 53-79. PMID 19427516 DOI: 10.1016/S0070-2153(09)01202-2  0.374
2008 Colón-Ramos DA, Shen K. Cellular conductors: glial cells as guideposts during neural circuit development. Plos Biology. 6: e112. PMID 18447586 DOI: 10.1371/Journal.Pbio.0060112  0.331
2007 Colón-Ramos DA, Margeta MA, Shen K. Glia promote local synaptogenesis through UNC-6 (netrin) signaling in C. elegans Science. 318: 103-106. PMID 17916735 DOI: 10.1126/Science.1143762  0.363
2006 Colón-Ramos DA, Shenvi CL, Weitzel DH, Gan EC, Matts R, Cate J, Kornbluth S. Direct ribosomal binding by a cellular inhibitor of translation. Nature Structural & Molecular Biology. 13: 103-11. PMID 16429152 DOI: 10.1038/Nsmb1052  0.592
2003 Olson MR, Holley CL, Gan EC, Colón-Ramos DA, Kaplan B, Kornbluth S. A GH3-like domain in reaper is required for mitochondrial localization and induction of IAP degradation. The Journal of Biological Chemistry. 278: 44758-68. PMID 12917412 DOI: 10.1074/Jbc.M308055200  0.672
2002 Holley CL, Olson MR, Colón-Ramos DA, Kornbluth S. Reaper eliminates IAP proteins through stimulated IAP degradation and generalized translational inhibition. Nature Cell Biology. 4: 439-44. PMID 12021770 DOI: 10.1038/Ncb798  0.664
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