| Year |
Citation |
Score |
| 2024 |
Chen Y, Dougan KE, Nguyen Q, Bhattacharya D, Chan CX. Genome-wide transcriptome analysis reveals the diversity and function of long non-coding RNAs in dinoflagellates. Nar Genomics and Bioinformatics. 6: lqae016. PMID 38344275 DOI: 10.1093/nargab/lqae016 |
0.404 |
|
| 2023 |
Dougan KE, Deng ZL, Wöhlbrand L, Reuse C, Bunk B, Chen Y, Hartlich J, Hiller K, John U, Kalvelage J, Mansky J, Neumann-Schaal M, Overmann J, Petersen J, Sanchez-Garcia S, ... ... Bhattacharya D, et al. Multi-omics analysis reveals the molecular response to heat stress in a "red tide" dinoflagellate. Genome Biology. 24: 265. PMID 37996937 DOI: 10.1186/s13059-023-03107-4 |
0.426 |
|
| 2023 |
Bhattacharya D, Stephens TG, Chille EE, Benites LF, Chan CX. Facultative lifestyle drives diversity of coral algal symbionts. Trends in Ecology & Evolution. PMID 37953106 DOI: 10.1016/j.tree.2023.10.005 |
0.455 |
|
| 2023 |
Shah S, Dougan KE, Chen Y, Bhattacharya D, Chan CX. Gene duplication is the primary driver of intraspecific genomic divergence in coral algal symbionts. Open Biology. 13: 230182. PMID 37751888 DOI: 10.1098/rsob.230182 |
0.575 |
|
| 2023 |
Williams A, Stephens TG, Shumaker A, Bhattacharya D. Peeling back the layers of coral holobiont multi-omics data. Iscience. 26: 107623. PMID 37694134 DOI: 10.1016/j.isci.2023.107623 |
0.346 |
|
| 2023 |
Ishida H, John U, Murray SA, Bhattacharya D, Chan CX. Developing model systems for dinoflagellates in the post-genomic era. Journal of Phycology. PMID 37657822 DOI: 10.1111/jpy.13386 |
0.491 |
|
| 2023 |
Stephens TG, Strand EL, Putnam HM, Bhattacharya D. Ploidy Variation and Its Implications for Reproduction and Population Dynamics in Two Sympatric Hawaiian Coral Species. Genome Biology and Evolution. 15. PMID 37566739 DOI: 10.1093/gbe/evad149 |
0.392 |
|
| 2023 |
Van Etten J, Stephens TG, Bhattacharya D. A k-mer-based approach for phylogenetic classification of taxa in environmental genomic data. Systematic Biology. PMID 37314057 DOI: 10.1093/sysbio/syad037 |
0.491 |
|
| 2023 |
Lee Y, Cho CH, Noh C, Yang JH, Park SI, Lee YM, West JA, Bhattacharya D, Jo K, Yoon HS. Origin of minicircular mitochondrial genomes in red algae. Nature Communications. 14: 3363. PMID 37291154 DOI: 10.1038/s41467-023-39084-2 |
0.518 |
|
| 2023 |
Davies SW, Gamache MH, Howe-Kerr LI, Kriefall NG, Baker AC, Banaszak AT, Bay LK, Bellantuono AJ, Bhattacharya D, Chan CX, Claar DC, Coffroth MA, Cunning R, Davy SK, Del Campo J, et al. Building consensus around the assessment and interpretation of Symbiodiniaceae diversity. Peerj. 11: e15023. PMID 37151292 DOI: 10.7717/peerj.15023 |
0.393 |
|
| 2023 |
Van Etten J, Benites LF, Stephens TG, Yoon HS, Bhattacharya D. Algae obscura: The potential of rare species as model systems. Journal of Phycology. PMID 36764681 DOI: 10.1111/jpy.13321 |
0.395 |
|
| 2023 |
Cho CH, Park SI, Huang TY, Lee Y, Ciniglia C, Yadavalli HC, Yang SW, Bhattacharya D, Yoon HS. Genome-wide signatures of adaptation to extreme environments in red algae. Nature Communications. 14: 10. PMID 36599855 DOI: 10.1038/s41467-022-35566-x |
0.529 |
|
| 2022 |
Benites LF, Stephens TG, Bhattacharya D. Multiple waves of viral invasions in Symbiodiniaceae algal genomes. Virus Evolution. 8: veac101. PMID 36381231 DOI: 10.1093/ve/veac101 |
0.481 |
|
| 2022 |
Stephens TG, Lee J, Jeong Y, Yoon HS, Putnam HM, Majerová E, Bhattacharya D. High-quality genome assembles from key Hawaiian coral species. Gigascience. 11. PMID 36352542 DOI: 10.1093/gigascience/giac098 |
0.394 |
|
| 2022 |
Bhattacharya D, Etten JV, Benites LF, Stephens TG. Endosymbiotic ratchet accelerates divergence after organelle origin: The Paulinella model for plastid evolution: The Paulinella model for plastid evolution. Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology. e2200165. PMID 36328783 DOI: 10.1002/bies.202200165 |
0.4 |
|
| 2022 |
Gabr A, Stephens TG, Bhattacharya D. Loss of key endosymbiont genes may facilitate early host control of the chromatophore in . Iscience. 25: 104974. PMID 36093053 DOI: 10.1016/j.isci.2022.104974 |
0.544 |
|
| 2022 |
Chen Y, Shah S, Dougan KE, van Oppen MJH, Bhattacharya D, Chan CX. Improved Genome Assembly Reveals Features of a Facultative Coral Symbiont and the Complex Evolutionary History of Dinoflagellate Genes. Microorganisms. 10. PMID 36014080 DOI: 10.3390/microorganisms10081662 |
0.614 |
|
| 2022 |
Calatrava V, Stephens TG, Gabr A, Bhaya D, Bhattacharya D, Grossman AR. Retrotransposition facilitated the establishment of a primary plastid in the thecate amoeba . Proceedings of the National Academy of Sciences of the United States of America. 119: e2121241119. PMID 35639693 DOI: 10.1073/pnas.2121241119 |
0.535 |
|
| 2022 |
Lo R, Dougan KE, Chen Y, Shah S, Bhattacharya D, Chan CX. Alignment-Free Analysis of Whole-Genome Sequences From Symbiodiniaceae Reveals Different Phylogenetic Signals in Distinct Regions. Frontiers in Plant Science. 13: 815714. PMID 35557718 DOI: 10.3389/fpls.2022.815714 |
0.522 |
|
| 2022 |
Van Etten J, Cho CH, Yoon HS, Bhattacharya D. Extremophilic red algae as models for understanding adaptation to hostile environments and the evolution of eukaryotic life on the early earth. Seminars in Cell & Developmental Biology. PMID 35339358 DOI: 10.1016/j.semcdb.2022.03.007 |
0.515 |
|
| 2022 |
Gabr A, Stephens TG, Bhattacharya D. Hypothesis: Trans-splicing generates evolutionary novelty in the photosynthetic amoeba Paulinella. Journal of Phycology. PMID 35255163 DOI: 10.1111/jpy.13247 |
0.518 |
|
| 2022 |
Dougan KE, González-Pech RA, Stephens TG, Shah S, Chen Y, Ragan MA, Bhattacharya D, Chan CX. Genome-powered classification of microbial eukaryotes: focus on coral algal symbionts. Trends in Microbiology. PMID 35227551 DOI: 10.1016/j.tim.2022.02.001 |
0.548 |
|
| 2022 |
Gabr A, Zournas A, Stephens TG, Dismukes GC, Bhattacharya D. Evidence for a robust photosystem II in the photosynthetic amoeba Paulinella. The New Phytologist. PMID 35211975 DOI: 10.1111/nph.18052 |
0.453 |
|
| 2022 |
Kim D, Lee J, Cho CH, Kim EJ, Bhattacharya D, Yoon HS. Group II intron and repeat-rich red algal mitochondrial genomes demonstrate the dynamic recent history of autocatalytic RNAs. Bmc Biology. 20: 2. PMID 34996446 DOI: 10.1186/s12915-021-01200-3 |
0.445 |
|
| 2021 |
Williams A, Pathmanathan JS, Stephens TG, Su X, Chiles EN, Conetta D, Putnam HM, Bhattacharya D. Multi-omic characterization of the thermal stress phenome in the stony coral . Peerj. 9: e12335. PMID 34824906 DOI: 10.7717/peerj.12335 |
0.363 |
|
| 2021 |
Trigg SA, Venkataraman YR, Gavery MR, Roberts SB, Bhattacharya D, Downey-Wall A, Eirin-Lopez JM, Johnson KM, Lotterhos KE, Puritz JB, Putnam HM. Invertebrate methylomes provide insight into mechanisms of environmental tolerance and reveal methodological biases. Molecular Ecology Resources. PMID 34709728 DOI: 10.1111/1755-0998.13542 |
0.459 |
|
| 2021 |
Uthanumallian K, Iha C, Repetti SI, Chan CX, Bhattacharya D, Duchene S, Verbruggen H. Tightly constrained genome reduction and relaxation of purifying selection during secondary plastid endosymbiosis. Molecular Biology and Evolution. PMID 34613411 DOI: 10.1093/molbev/msab295 |
0.511 |
|
| 2021 |
Park H, Park JH, Lee Y, Woo DU, Jeon HH, Sung YW, Shim S, Kim SH, Lee KO, Kim JY, Kim CK, Bhattacharya D, Yoon HS, Kang YJ. Genome of the world's smallest flowering plant, Wolffia australiana, helps explain its specialized physiology and unique morphology. Communications Biology. 4: 900. PMID 34294872 DOI: 10.1038/s42003-021-02422-5 |
0.541 |
|
| 2021 |
Stephens TG, Gabr A, Calatrava V, Grossman AR, Bhattacharya D. Why is primary endosymbiosis so rare? The New Phytologist. PMID 34018613 DOI: 10.1111/nph.17478 |
0.386 |
|
| 2021 |
González-Pech RA, Stephens TG, Chen Y, Mohamed AR, Cheng Y, Shah S, Dougan KE, Fortuin MDA, Lagorce R, Burt DW, Bhattacharya D, Ragan MA, Chan CX. Comparison of 15 dinoflagellate genomes reveals extensive sequence and structural divergence in family Symbiodiniaceae and genus Symbiodinium. Bmc Biology. 19: 73. PMID 33849527 DOI: 10.1186/s12915-021-00994-6 |
0.49 |
|
| 2021 |
Lhee D, Bhattacharya D, Yoon HS. Independent evolution of the thioredoxin system in photosynthetic Paulinella species. Current Biology : Cb. 31: R328-R329. PMID 33848483 DOI: 10.1016/j.cub.2021.02.029 |
0.474 |
|
| 2021 |
Williams A, Chiles EN, Conetta D, Pathmanathan JS, Cleves PA, Putnam HM, Su X, Bhattacharya D. Metabolomic shifts associated with heat stress in coral holobionts. Science Advances. 7. PMID 33523848 DOI: 10.1126/sciadv.abd4210 |
0.319 |
|
| 2021 |
Graf L, Shin Y, Yang JH, Choi JW, Hwang IK, Nelson W, Bhattacharya D, Viard F, Yoon HS. A genome-wide investigation of the effect of farming and human-mediated introduction on the ubiquitous seaweed Undaria pinnatifida. Nature Ecology & Evolution. PMID 33495590 DOI: 10.1038/s41559-020-01378-9 |
0.483 |
|
| 2020 |
Cho CH, In Park S, Ciniglia C, Yang EC, Graf L, Bhattacharya D, Yoon HS. Correction to: Potential causes and consequences of rapid mitochondrial genome evolution in thermoacidophilic Galdieria (Rhodophyta). Bmc Evolutionary Biology. 20: 132. PMID 33028200 DOI: 10.1186/s12862-020-01686-5 |
0.416 |
|
| 2020 |
Van Etten J, Bhattacharya D. Horizontal Gene Transfer in Eukaryotes: Not if, but How Much? Trends in Genetics : Tig. PMID 33012528 DOI: 10.1016/j.tig.2020.08.006 |
0.55 |
|
| 2020 |
Cho CH, Park SI, Ciniglia C, Yang EC, Graf L, Bhattacharya D, Yoon HS. Potential causes and consequences of rapid mitochondrial genome evolution in thermoacidophilic Galdieria (Rhodophyta). Bmc Evolutionary Biology. 20: 112. PMID 32892741 DOI: 10.1186/S12862-020-01677-6 |
0.523 |
|
| 2020 |
Van Etten J, Shumaker A, Mass T, Putnam HM, Bhattacharya D. Transcriptome analysis provides a blueprint of coral egg and sperm functions. Peerj. 8: e9739. PMID 32874783 DOI: 10.7717/Peerj.9739 |
0.45 |
|
| 2020 |
Lhee D, Lee J, Ettahi K, Cho CH, Ha JS, Chan YF, Zelzion U, Stephens TG, Price DC, Gabr A, Nowack ECM, Bhattacharya D, Yoon HS. Amoeba genome reveals dominant host contribution to plastid endosymbiosis. Molecular Biology and Evolution. PMID 32790833 DOI: 10.1093/Molbev/Msaa206 |
0.64 |
|
| 2020 |
Wang D, Yu X, Xu K, Bi G, Cao M, Zelzion E, Fu C, Sun P, Liu Y, Kong F, Du G, Tang X, Yang R, Wang J, Tang L, ... ... Bhattacharya D, et al. Pyropia yezoensis genome reveals diverse mechanisms of carbon acquisition in the intertidal environment. Nature Communications. 11: 4028. PMID 32788591 DOI: 10.1038/S41467-020-17689-1 |
0.538 |
|
| 2020 |
Zhang Z, Qu C, Zhang K, He Y, Zhao X, Yang L, Zheng Z, Ma X, Wang X, Wang W, Wang K, Li D, Zhang L, Zhang X, Su D, ... ... Bhattacharya D, et al. Adaptation to Extreme Antarctic Environments Revealed by the Genome of a Sea Ice Green Alga. Current Biology : Cb. PMID 32619486 DOI: 10.1016/J.Cub.2020.06.029 |
0.523 |
|
| 2020 |
Shah S, Chen Y, Bhattacharya D, Chan CX. Sex in Symbiodiniaceae dinoflagellates: genomic evidence for independent loss of the canonical synaptonemal complex. Scientific Reports. 10: 9792. PMID 32555361 DOI: 10.1038/S41598-020-66429-4 |
0.602 |
|
| 2020 |
Fan X, Qiu H, Han W, Wang Y, Xu D, Zhang X, Bhattacharya D, Ye N. Phytoplankton pangenome reveals extensive prokaryotic horizontal gene transfer of diverse functions. Science Advances. 6: eaba0111. PMID 32494685 DOI: 10.1126/Sciadv.Aba0111 |
0.615 |
|
| 2020 |
Stephens TG, González-Pech RA, Cheng Y, Mohamed AR, Burt DW, Bhattacharya D, Ragan MA, Chan CX. Genomes of the dinoflagellate Polarella glacialis encode tandemly repeated single-exon genes with adaptive functions. Bmc Biology. 18: 56. PMID 32448240 DOI: 10.1186/S12915-020-00782-8 |
0.586 |
|
| 2020 |
Gabr A, Grossman AR, Bhattacharya D. Paulinella, a model for understanding plastid primary endosymbiosis. Journal of Phycology. PMID 32289879 DOI: 10.1111/Jpy.13003 |
0.479 |
|
| 2020 |
Teulière J, Bhattacharya D, Bapteste E. Ancestral germen/soma distinction in microbes: Expanding the disposable soma theory of aging to all unicellular lineages. Ageing Research Reviews. 60: 101064. PMID 32268207 DOI: 10.1016/J.Arr.2020.101064 |
0.459 |
|
| 2020 |
Shoguchi E, Yoshioka Y, Shinzato C, Arimoto A, Bhattacharya D, Satoh N. Correlation between organelle genetic variation and RNA editing in dinoflagellates associated with the coral Acropora digitifera. Genome Biology and Evolution. PMID 32108224 DOI: 10.1093/Gbe/Evaa042 |
0.586 |
|
| 2020 |
Sui J, Foflonker F, Bhattacharya D, Javanmard M. Electrical impedance as an indicator of microalgal cell health. Scientific Reports. 10: 1251. PMID 31988339 DOI: 10.1038/S41598-020-57541-6 |
0.391 |
|
| 2019 |
Cleves PA, Shumaker A, Lee J, Putnam HM, Bhattacharya D. Unknown to Known: Advancing Knowledge of Coral Gene Function. Trends in Genetics : Tig. PMID 31882190 DOI: 10.1016/J.Tig.2019.11.001 |
0.573 |
|
| 2019 |
Chen Y, González-Pech RA, Stephens TG, Bhattacharya D, Chan CX. Evidence that inconsistent gene prediction can mislead analysis of dinoflagellate genomes. Journal of Phycology. PMID 31713873 DOI: 10.1111/Jpy.12947 |
0.611 |
|
| 2019 |
Lee J, Kim D, Bhattacharya D, Yoon HS. Expansion of phycobilisome linker gene families in mesophilic red algae. Nature Communications. 10: 4823. PMID 31645564 DOI: 10.1038/S41467-019-12779-1 |
0.624 |
|
| 2019 |
Garcia-Pichel F, Zehr JP, Bhattacharya D, Pakrasi HB. What's in a name? The case of cyanobacteria. Journal of Phycology. PMID 31618454 DOI: 10.1111/Jpy.12934 |
0.397 |
|
| 2019 |
Lord E, Pathmanathan JS, Corel E, Makarenkov V, Lopez P, Bouchard F, Bhattacharya D, Antoine PO, Guyader HL, Lapointe FJ, Bapteste E. Introducing trait networks to elucidate the fluidity of organismal evolution using palaeontological data. Genome Biology and Evolution. PMID 31504500 DOI: 10.1093/Gbe/Evz182 |
0.481 |
|
| 2019 |
Rossoni AW, Price DC, Seger M, Lyska D, Lammers P, Bhattacharya D, Weber APM. The genomes of polyextremophilic Cyanidiales contain 1% horizontally transferred genes with diverse adaptive functions. Elife. 8. PMID 31149898 DOI: 10.7554/Elife.45017 |
0.642 |
|
| 2019 |
Price DC, Goodenough UW, Roth R, Lee JH, Kariyawasam T, Mutwil M, Ferrari C, Facchinelli F, Ball SG, Cenci U, Chan CX, Wagner NE, Yoon HS, Weber APM, Bhattacharya D. Analysis of an improved Cyanophora paradoxa genome assembly. Dna Research : An International Journal For Rapid Publication of Reports On Genes and Genomes. PMID 31098614 DOI: 10.1093/Dnares/Dsz009 |
0.582 |
|
| 2019 |
González-Pech RA, Bhattacharya D, Ragan MA, Chan CX. Genome Evolution of Coral Reef Symbionts as Intracellular Residents. Trends in Ecology & Evolution. PMID 31084944 DOI: 10.1016/J.Tree.2019.04.010 |
0.593 |
|
| 2019 |
Nissimov JI, Talmy D, Haramaty L, Fredricks H, Zelzion E, Knowles B, Eren M, Vandzura R, Laber CP, Schieler BM, Johns CT, More K, Coolen MJL, Follows MJ, Bhattacharya D, et al. Biochemical diversity of glycosphingolipid biosynthesis as a driver of Coccolithovirus competitive ecology. Environmental Microbiology. PMID 31001863 DOI: 10.1111/1462-2920.14633 |
0.425 |
|
| 2019 |
Shumaker A, Putnam HM, Qiu H, Price DC, Zelzion E, Harel A, Wagner NE, Gates RD, Yoon HS, Bhattacharya D. Genome analysis of the rice coral Montipora capitata. Scientific Reports. 9: 2571. PMID 30796282 DOI: 10.1038/S41598-019-39274-3 |
0.605 |
|
| 2019 |
Lhee D, Ha JS, Kim S, Park MG, Bhattacharya D, Yoon HS. Evolutionary dynamics of the chromatophore genome in three photosynthetic Paulinella species. Scientific Reports. 9: 2560. PMID 30796245 DOI: 10.1038/S41598-019-38621-8 |
0.63 |
|
| 2019 |
Ferrari C, Proost S, Janowski M, Becker J, Nikoloski Z, Bhattacharya D, Price D, Tohge T, Bar-Even A, Fernie A, Stitt M, Mutwil M. Kingdom-wide comparison reveals the evolution of diurnal gene expression in Archaeplastida. Nature Communications. 10: 737. PMID 30760717 DOI: 10.1038/S41467-019-08703-2 |
0.531 |
|
| 2019 |
Rossoni AW, Price DC, Seger M, Lyska D, Lammers P, Bhattacharya D, Weber AP. Author response: The genomes of polyextremophilic cyanidiales contain 1% horizontally transferred genes with diverse adaptive functions Elife. DOI: 10.7554/Elife.45017.152 |
0.482 |
|
| 2019 |
Das PP, Krishnan G, Doley J, Bhattacharya D, Deb SM, Chakravarty P, DAS PJ. Establishing gene Amelogenin as sex-specific marker in yak by genomic approach Journal of Genetics. 98. DOI: 10.1007/s12041-019-1061-x |
0.362 |
|
| 2018 |
Wei G, Jia Q, Chen X, Köllner TG, Bhattacharya D, Wong GK, Gershenzon J, Chen F. Terpene Biosynthesis in Red Algae is Catalyzed by Microbial Type but not Typical Plant Terpene Synthases. Plant Physiology. PMID 30538166 DOI: 10.1104/Pp.18.01413 |
0.608 |
|
| 2018 |
Stephens TG, Ragan MA, Bhattacharya D, Chan CX. Core genes in diverse dinoflagellate lineages include a wealth of conserved dark genes with unknown functions. Scientific Reports. 8: 17175. PMID 30464192 DOI: 10.1038/S41598-018-35620-Z |
0.608 |
|
| 2018 |
Lee J, Song HJ, In Park S, Lee YM, Jeong SY, Oh Cho T, Kim JH, Choi HG, Choi CG, Nelson WA, Fredericq S, Bhattacharya D, Su Yoon H. Mitochondrial and plastid genomes from coralline red algae provide insights into the incongruent evolutionary histories of organelles. Genome Biology and Evolution. PMID 30364957 DOI: 10.1093/Gbe/Evy222 |
0.631 |
|
| 2018 |
Cenci U, Qiu H, Pillonel T, Cardol P, Remacle C, Colleoni C, Kadouche D, Chabi M, Greub G, Bhattacharya D, Ball SG. Host-pathogen biotic interactions shaped vitamin K metabolism in Archaeplastida. Scientific Reports. 8: 15243. PMID 30323231 DOI: 10.1038/S41598-018-33663-W |
0.53 |
|
| 2018 |
De Clerck O, Kao SM, Bogaert KA, Blomme J, Foflonker F, Kwantes M, Vancaester E, Vanderstraeten L, Aydogdu E, Boesger J, Califano G, Charrier B, Clewes R, Del Cortona A, D'Hondt S, ... ... Bhattacharya D, et al. Insights into the Evolution of Multicellularity from the Sea Lettuce Genome. Current Biology : Cb. PMID 30220504 DOI: 10.1016/J.Cub.2018.08.015 |
0.634 |
|
| 2018 |
Foflonker F, Mollegard D, Ong M, Yoon HS, Bhattacharya D. Genomic analysis of Picochlorum species reveals how microalgae may adapt to variable environments. Molecular Biology and Evolution. PMID 30184126 DOI: 10.1093/Molbev/Msy167 |
0.596 |
|
| 2018 |
Lee J, Yang EC, Graf L, Yang JH, Qiu H, Zel Zion U, Chan CX, Stephens TG, Weber APM, Boo GH, Boo SM, Kim KM, Shin Y, Jung M, Lee SJ, ... ... Bhattacharya D, et al. Analysis of the draft genome of the red seaweed Gracilariopsis chorda provides insights into genome size evolution in Rhodophyta. Molecular Biology and Evolution. PMID 29688518 DOI: 10.1093/molbev/msy081 |
0.515 |
|
| 2018 |
Chan CX, Vaysberg P, Price DC, Pelletreau KN, Rumpho ME, Bhattacharya D. Active host response to algal symbionts in the sea slug Elysia chlorotica. Molecular Biology and Evolution. PMID 29659974 DOI: 10.1093/Molbev/Msy061 |
0.504 |
|
| 2018 |
Zhang N, Cai G, Price DC, Crouch JA, Gladieux P, Hillman B, Khang CH, LeBrun MH, Lee YH, Luo J, Qiu H, Veltri D, Wisecaver JH, Zhu J, Bhattacharya D. Genome wide analysis of the transition to pathogenic lifestyles in Magnaporthales fungi. Scientific Reports. 8: 5862. PMID 29651164 DOI: 10.1038/S41598-018-24301-6 |
0.79 |
|
| 2018 |
Qiu H, Rossoni AW, Weber APM, Yoon HS, Bhattacharya D. Unexpected conservation of the RNA splicing apparatus in the highly streamlined genome of Galdieria sulphuraria. Bmc Evolutionary Biology. 18: 41. PMID 29606099 DOI: 10.1186/S12862-018-1161-X |
0.587 |
|
| 2018 |
Méheust R, Bhattacharya D, Pathmanathan JS, McInerney JO, Lopez P, Bapteste E. Formation of chimeric genes with essential functions at the origin of eukaryotes. Bmc Biology. 16: 30. PMID 29534719 DOI: 10.1186/S12915-018-0500-0 |
0.58 |
|
| 2018 |
Bhattacharya D, Qiu H, Lee J, Su Yoon H, Weber APM, Price DC. When Less is More: Red Algae as Models for Studying Gene Loss and Genome Evolution in Eukaryotes Critical Reviews in Plant Sciences. 37: 81-99. DOI: 10.1080/07352689.2018.1482364 |
0.547 |
|
| 2017 |
Zhang N, Luo J, Bhattacharya D. Advances in Fungal Phylogenomics and Their Impact on Fungal Systematics. Advances in Genetics. 100: 309-328. PMID 29153403 DOI: 10.1016/Bs.Adgen.2017.09.004 |
0.571 |
|
| 2017 |
Brodie J, Ball SG, Bouget FY, Chan CX, De Clerck O, Cock JM, Gachon C, Grossman AR, Mock T, Raven JA, Saha M, Smith AG, Vardi A, Yoon HS, Bhattacharya D. Biotic interactions as drivers of algal origin and evolution. The New Phytologist. PMID 28857164 DOI: 10.1111/Nph.14760 |
0.46 |
|
| 2017 |
Kim JI, Moore CE, Archibald JM, Bhattacharya D, Yi G, Yoon HS, Shin W. Evolutionary Dynamics of Cryptophyte Plastid Genomes. Genome Biology and Evolution. 9: 1859-1872. PMID 28854597 DOI: 10.1093/Gbe/Evx123 |
0.652 |
|
| 2017 |
Brawley SH, Blouin NA, Ficko-Blean E, Wheeler GL, Lohr M, Goodson HV, Jenkins JW, Blaby-Haas CE, Helliwell KE, Chan CX, Marriage TN, Bhattacharya D, Klein AS, Badis Y, Brodie J, et al. Insights into the red algae and eukaryotic evolution from the genome of Porphyra umbilicalis (Bangiophyceae, Rhodophyta). Proceedings of the National Academy of Sciences of the United States of America. PMID 28716924 DOI: 10.1073/Pnas.1703088114 |
0.547 |
|
| 2017 |
Qiu H, Zelzion E, Putnam HM, Gates RD, Wagner NE, Adams DK, Bhattacharya D. Discovery of SCORs: Anciently derived, highly conserved gene-associated repeats in stony corals. Genomics. PMID 28634029 DOI: 10.1016/J.Ygeno.2017.06.003 |
0.62 |
|
| 2017 |
Brodie J, Chan CX, De Clerck O, Cock JM, Coelho SM, Gachon C, Grossman AR, Mock T, Raven JA, Smith AG, Yoon HS, Bhattacharya D. The Algal Revolution. Trends in Plant Science. PMID 28610890 DOI: 10.1016/J.Tplants.2017.05.005 |
0.459 |
|
| 2017 |
Tripp EA, Zhang N, Schneider H, Huang Y, Mueller GM, Hu Z, Häggblom M, Bhattacharya D. Reshaping Darwin's Tree: Impact of the Symbiome. Trends in Ecology & Evolution. PMID 28601483 DOI: 10.1016/J.Tree.2017.05.002 |
0.436 |
|
| 2017 |
Putnam HM, Adams DK, Zelzion E, Wagner NE, Qiu H, Mass T, Falkowski PG, Gates RD, Bhattacharya D. Divergent evolutionary histories of DNA markers in a Hawaiian population of the coral Montipora capitata. Peerj. 5: e3319. PMID 28533967 DOI: 10.7717/Peerj.3319 |
0.545 |
|
| 2017 |
Price DC, Bhattacharya D. Robust Dinoflagellata phylogeny inferred from public transcriptome databases. Journal of Phycology. PMID 28273342 DOI: 10.1111/Jpy.12529 |
0.575 |
|
| 2017 |
Zhang R, Nowack EC, Price DC, Bhattacharya D, Grossman AR. Impact of light intensity and quality on chromatophore and nuclear gene expression in Paulinella chromatophora, an amoeba with nascent photosynthetic organelles. The Plant Journal : For Cell and Molecular Biology. PMID 28182317 DOI: 10.1111/Tpj.13488 |
0.608 |
|
| 2017 |
Qiu H, Lee JM, Yoon HS, Bhattacharya D. Hypothesis: Gene-rich plastid genomes in red algae may be an outcome of nuclear genome reduction. Journal of Phycology. PMID 28095611 DOI: 10.1111/Jpy.12514 |
0.645 |
|
| 2017 |
Cenci U, Bhattacharya D, Weber AP, Colleoni C, Subtil A, Ball SG. Biotic Host-Pathogen Interactions As Major Drivers of Plastid Endosymbiosis. Trends in Plant Science. PMID 28089380 DOI: 10.1016/J.Tplants.2016.12.007 |
0.464 |
|
| 2017 |
Honig JA, Zelzion E, Wagner NE, Kubik C, Averello V, Vaiciunas J, Bhattacharya D, Bonos SA, Meyer WA. Microsatellite Identification in Perennial Ryegrass using Next-Generation Sequencing Crop Science. 57: S-331-S-340. DOI: 10.2135/Cropsci2016.07.0608 |
0.34 |
|
| 2016 |
Qiu H, Yoon HS, Bhattacharya D. Red Algal Phylogenomics Provides a Robust Framework for Inferring Evolution of Key Metabolic Pathways. Plos Currents. 8. PMID 28018750 DOI: 10.1371/Currents.Tol.7B037376E6D84A1Be34Af756A4D90846 |
0.61 |
|
| 2016 |
Nowack EC, Price DC, Bhattacharya D, Singer A, Melkonian M, Grossman AR. Gene transfers from diverse bacteria compensate for reductive genome evolution in the chromatophore of Paulinella chromatophora. Proceedings of the National Academy of Sciences of the United States of America. 113: 12214-12219. PMID 27791007 DOI: 10.1073/Pnas.1608016113 |
0.639 |
|
| 2016 |
Pandey RS, Saxena G, Bhattacharya D, Qiu H, Azad RK. Using complementary approaches to identify trans-domain nuclear gene transfers in the extremophile Galdieria sulphuraria (Rhodophyta). Journal of Phycology. PMID 27704560 DOI: 10.1111/Jpy.12466 |
0.606 |
|
| 2016 |
Lee J, Cho CH, Park SI, Choi JW, Song HS, West JA, Bhattacharya D, Yoon HS. Parallel evolution of highly conserved plastid genome architecture in red seaweeds and seed plants. Bmc Biology. 14: 75. PMID 27589960 DOI: 10.1186/S12915-016-0299-5 |
0.57 |
|
| 2016 |
Cheng DM, Roopchand DE, Poulev A, Kuhn P, Armas I, Johnson WD, Oren A, Ribnicky D, Zelzion E, Bhattacharya D, Raskin I. High phenolics Rutgers Scarlet Lettuce improves glucose metabolism in high fat diet-induced obese mice. Molecular Nutrition & Food Research. PMID 27529448 DOI: 10.1002/Mnfr.201600290 |
0.327 |
|
| 2016 |
Price DC, Farinholt N, Gates C, Shumaker A, Wagner NE, Bienfang P, Bhattacharya D. Analysis of Gambierdiscus transcriptome data supports ancient origins of mixotrophic pathways in dinoflagellates. Environmental Microbiology. PMID 27485969 DOI: 10.1111/1462-2920.13478 |
0.482 |
|
| 2016 |
Ball SG, Bhattacharya D, Weber AP. Infection and the first eukaryotes--Response. Science (New York, N.Y.). 352: 1065-6. PMID 27230371 DOI: 10.1126/Science.Aaf6733 |
0.393 |
|
| 2016 |
Bhattacharya D, Agrawal S, Aranda M, Baumgarten S, Belcaid M, Drake JL, Erwin D, Foret S, Gates RD, Gruber DF, Kamel B, Lesser MP, Levy O, Liew YJ, MacManes M, et al. Comparative genomics explains the evolutionary success of reef-forming corals. Elife. 5. PMID 27218454 DOI: 10.7554/Elife.13288 |
0.589 |
|
| 2016 |
Qiu H, Cai G, Luo J, Bhattacharya D, Zhang N. Extensive horizontal gene transfers between plant pathogenic fungi. Bmc Biology. 14: 41. PMID 27215567 DOI: 10.1186/S12915-016-0264-3 |
0.584 |
|
| 2016 |
Stephens TG, Bhattacharya D, Ragan MA, Chan CX. PhySortR: a fast, flexible tool for sorting phylogenetic trees in R. Peerj. 4: e2038. PMID 27190724 DOI: 10.7717/Peerj.2038 |
0.443 |
|
| 2016 |
Leliaert F, Tronholm A, Lemieux C, Turmel M, DePriest MS, Bhattacharya D, Karol KG, Fredericq S, Zechman FW, Lopez-Bautista JM. Chloroplast phylogenomic analyses reveal the deepest-branching lineage of the Chlorophyta, Palmophyllophyceae class. nov. Scientific Reports. 6: 25367. PMID 27157793 DOI: 10.1038/Srep25367 |
0.568 |
|
| 2016 |
Ball SG, Bhattacharya D, Qiu H, Weber AP. Commentary: Plastid establishment did not require a chlamydial partner. Frontiers in Cellular and Infection Microbiology. 6: 43. PMID 27148492 DOI: 10.3389/Fcimb.2016.00043 |
0.427 |
|
| 2016 |
Mass T, Putnam HM, Drake JL, Zelzion E, Gates RD, Bhattacharya D, Falkowski PG. Temporal and spatial expression patterns of biomineralization proteins during early development in the stony coral Pocillopora damicornis. Proceedings. Biological Sciences / the Royal Society. 283. PMID 27122561 DOI: 10.1098/Rspb.2016.0322 |
0.434 |
|
| 2016 |
Lee J, Kim KM, Yang EC, Miller KA, Boo SM, Bhattacharya D, Yoon HS. Reconstructing the complex evolutionary history of mobile plasmids in red algal genomes. Scientific Reports. 6: 23744. PMID 27030297 DOI: 10.1038/Srep23744 |
0.575 |
|
| 2016 |
Méheust R, Zelzion E, Bhattacharya D, Lopez P, Bapteste E. Protein networks identify novel symbiogenetic genes resulting from plastid endosymbiosis. Proceedings of the National Academy of Sciences of the United States of America. PMID 26976593 DOI: 10.1073/Pnas.1517551113 |
0.618 |
|
| 2016 |
Ball SG, Bhattacharya D, Weber AP. EVOLUTION. Pathogen to powerhouse. Science (New York, N.Y.). 351: 659-60. PMID 26912842 DOI: 10.1126/Science.Aad8864 |
0.451 |
|
| 2016 |
Yang EC, Boo SM, Bhattacharya D, Saunders GW, Knoll AH, Fredericq S, Graf L, Yoon HS. Divergence time estimates and the evolution of major lineages in the florideophyte red algae. Scientific Reports. 6: 21361. PMID 26892537 DOI: 10.1038/Srep21361 |
0.652 |
|
| 2016 |
Bhattacharya D, Agrawal S, Aranda M, Baumgarten S, Belcaid M, Drake JL, Erwin D, Foret S, Gates RD, Gruber DF, Kamel B, Lesser MP, Levy O, Liew YJ, MacManes M, et al. Author response: Comparative genomics explains the evolutionary success of reef-forming corals Elife. DOI: 10.7554/Elife.13288.066 |
0.414 |
|
| 2016 |
Song HJ, Lee JM, Graf L, Rho M, Qiu H, Bhattacharya D, Yoon HS. A novice’s guide to analyzing NGS-derived organelle and metagenome data Algae. 31: 137-154. DOI: 10.4490/Algae.2016.31.6.5 |
0.402 |
|
| 2016 |
Foflonker F, Ananyev G, Qiu H, Morrison A, Palenik B, Dismukes GC, Bhattacharya D. The unexpected extremophile: Tolerance to fluctuating salinity in the green alga Picochlorum Algal Research. 16: 465-472. DOI: 10.1016/J.Algal.2016.04.003 |
0.5 |
|
| 2015 |
Qiu H, Price DC, Yang EC, Yoon HS, Bhattacharya D. Evidence of ancient genome reduction in red algae (Rhodophyta). Journal of Phycology. 51: 624-636. PMID 26986787 DOI: 10.1111/Jpy.12294 |
0.662 |
|
| 2015 |
Bhattacharya D, Qiu H, Price DC, Yoon HS. Why we need more algal genomes. Journal of Phycology. 51: 1-5. PMID 26986254 DOI: 10.1111/Jpy.12267 |
0.515 |
|
| 2015 |
Yang EC, Kim KM, Kim SY, Lee J, Boo GH, Lee JH, Nelson WA, Yi G, Schmidt WE, Fredericq S, Boo SM, Bhattacharya D, Yoon HS. Highly Conserved Mitochondrial Genomes among Multicellular Red Algae of the Florideophyceae. Genome Biology and Evolution. 7: 2394-406. PMID 26245677 DOI: 10.1093/Gbe/Evv147 |
0.619 |
|
| 2015 |
Perrineau MM, Price DC, Mohr G, Bhattacharya D. Recent mobility of plastid encoded group II introns and twintrons in five strains of the unicellular red alga Porphyridium. Peerj. 3: e1017. PMID 26157604 DOI: 10.7717/Peerj.1017 |
0.466 |
|
| 2015 |
Karkar S, Facchinelli F, Price DC, Weber AP, Bhattacharya D. Metabolic connectivity as a driver of host and endosymbiont integration. Proceedings of the National Academy of Sciences of the United States of America. PMID 25825767 DOI: 10.1073/Pnas.1421375112 |
0.51 |
|
| 2015 |
Luo J, Qiu H, Cai G, Wagner NE, Bhattacharya D, Zhang N. Phylogenomic analysis uncovers the evolutionary history of nutrition and infection mode in rice blast fungus and other Magnaporthales. Scientific Reports. 5: 9448. PMID 25819715 DOI: 10.1038/Srep09448 |
0.503 |
|
| 2015 |
Harel A, Karkar S, Cheng S, Falkowski PG, Bhattacharya D. Deciphering primordial cyanobacterial genome functions from protein network analysis. Current Biology : Cb. 25: 628-34. PMID 25683807 DOI: 10.1016/J.Cub.2014.12.061 |
0.546 |
|
| 2015 |
Levitan O, Dinamarca J, Zelzion E, Lun DS, Guerra LT, Kim MK, Kim J, Van Mooy BA, Bhattacharya D, Falkowski PG. Remodeling of intermediate metabolism in the diatom Phaeodactylum tricornutum under nitrogen stress. Proceedings of the National Academy of Sciences of the United States of America. 112: 412-7. PMID 25548193 DOI: 10.1073/Pnas.1419818112 |
0.417 |
|
| 2015 |
Foflonker F, Price DC, Qiu H, Palenik B, Wang S, Bhattacharya D. Genome of the halotolerant green alga Picochlorum sp. reveals strategies for thriving under fluctuating environmental conditions. Environmental Microbiology. 17: 412-26. PMID 24965277 DOI: 10.1111/1462-2920.12541 |
0.58 |
|
| 2015 |
Qiu H, Price DC, Yang EC, Yoon HS, Bhattacharya D. Evidence of ancient genome reduction in red algae (Rhodophyta) Journal of Phycology. 51: 624-636. DOI: 10.1111/jpy.12294 |
0.321 |
|
| 2014 |
Rockwell NC, Lagarias JC, Bhattacharya D. Primary endosymbiosis and the evolution of light and oxygen sensing in photosynthetic eukaryotes. Frontiers in Ecology and Evolution. 2. PMID 25729749 DOI: 10.3389/Fevo.2014.00066 |
0.63 |
|
| 2014 |
DePriest MS, Bhattacharya D, López-Bautista JM. The mitochondrial genome of Grateloupia taiwanensis (Halymeniaceae, Rhodophyta) and comparative mitochondrial genomics of red algae. The Biological Bulletin. 227: 191-200. PMID 25411376 DOI: 10.1086/Bblv227N2P191 |
0.597 |
|
| 2014 |
Polashock J, Zelzion E, Fajardo D, Zalapa J, Georgi L, Bhattacharya D, Vorsa N. The American cranberry: first insights into the whole genome of a species adapted to bog habitat. Bmc Plant Biology. 14: 165. PMID 24927653 DOI: 10.1186/1471-2229-14-165 |
0.548 |
|
| 2014 |
Harel A, Bromberg Y, Falkowski PG, Bhattacharya D. Evolutionary history of redox metal-binding domains across the tree of life. Proceedings of the National Academy of Sciences of the United States of America. 111: 7042-7. PMID 24778258 DOI: 10.1073/Pnas.1403676111 |
0.456 |
|
| 2014 |
Roy RS, Price DC, Schliep A, Cai G, Korobeynikov A, Yoon HS, Yang EC, Bhattacharya D. Single cell genome analysis of an uncultured heterotrophic stramenopile. Scientific Reports. 4: 4780. PMID 24759094 DOI: 10.1038/Srep04780 |
0.608 |
|
| 2014 |
Perrineau MM, Gross J, Zelzion E, Price DC, Levitan O, Boyd J, Bhattacharya D. Using natural selection to explore the adaptive potential of Chlamydomonas reinhardtii. Plos One. 9: e92533. PMID 24658261 DOI: 10.1371/Journal.Pone.0092533 |
0.505 |
|
| 2014 |
Cheng S, Price DC, Karkar S, Bhattacharya D. Exploring biotic interactions within protist cell populations using network methods. The Journal of Eukaryotic Microbiology. 61: 399-403. PMID 24628693 DOI: 10.1111/Jeu.12113 |
0.476 |
|
| 2014 |
Roy RS, Bhattacharya D, Schliep A. Turtle: identifying frequent k-mers with cache-efficient algorithms. Bioinformatics (Oxford, England). 30: 1950-7. PMID 24618471 DOI: 10.1093/Bioinformatics/Btu132 |
0.382 |
|
| 2014 |
Rockwell NC, Duanmu D, Martin SS, Bachy C, Price DC, Bhattacharya D, Worden AZ, Lagarias JC. Eukaryotic algal phytochromes span the visible spectrum. Proceedings of the National Academy of Sciences of the United States of America. 111: 3871-6. PMID 24567382 DOI: 10.1073/Pnas.1401871111 |
0.639 |
|
| 2014 |
Kim KM, Park JH, Bhattacharya D, Yoon HS. Applications of next-generation sequencing to unravelling the evolutionary history of algae. International Journal of Systematic and Evolutionary Microbiology. 64: 333-45. PMID 24505071 DOI: 10.1099/Ijs.0.054221-0 |
0.6 |
|
| 2014 |
Perrineau MM, Zelzion E, Gross J, Price DC, Boyd J, Bhattacharya D. Evolution of salt tolerance in a laboratory reared population of Chlamydomonas reinhardtii. Environmental Microbiology. 16: 1755-66. PMID 24373049 DOI: 10.1111/1462-2920.12372 |
0.447 |
|
| 2014 |
Cheng S, Karkar S, Bapteste E, Yee N, Falkowski P, Bhattacharya D. Sequence similarity network reveals the imprints of major diversification events in the evolution of microbial life Frontiers in Ecology and Evolution. 2. DOI: 10.3389/Fevo.2014.00072 |
0.388 |
|
| 2013 |
Bhattacharya D, Price DC, Bicep C, Bapteste E, Sarwade M, Rajah VD, Yoon HS. Identification of a Marine Cyanophage in a Protist Single-cell Metagenome Assembly. Journal of Phycology. 49: 207-212. PMID 27008402 DOI: 10.1111/Jpy.12028 |
0.575 |
|
| 2013 |
Chan CX, Bhattacharya D. Analysis of horizontal genetic transfer in red algae in the post-genomics age. Mobile Genetic Elements. 3: e27669. PMID 24475368 DOI: 10.4161/Mge.27669 |
0.614 |
|
| 2013 |
Nyati S, Bhattacharya D, Werth S, Honegger R. Phylogenetic analysis of LSU and SSU rDNA group I introns of lichen photobionts associated with the genera Xanthoria and Xanthomendoza (Teloschistaceae, lichenized Ascomycetes). Journal of Phycology. 49. PMID 24415800 DOI: 10.1111/Jpy.12126 |
0.536 |
|
| 2013 |
Chan CX, Baglivi FL, Jenkins CE, Bhattacharya D. Foreign gene recruitment to the fatty acid biosynthesis pathway in diatoms. Mobile Genetic Elements. 3: e27313. PMID 24404416 DOI: 10.4161/Mge.27313 |
0.579 |
|
| 2013 |
Cenci U, Chabi M, Ducatez M, Tirtiaux C, Nirmal-Raj J, Utsumi Y, Kobayashi D, Sasaki S, Suzuki E, Nakamura Y, Putaux JL, Roussel X, Durand-Terrasson A, Bhattacharya D, Vercoutter-Edouart AS, et al. Convergent evolution of polysaccharide debranching defines a common mechanism for starch accumulation in cyanobacteria and plants. The Plant Cell. 25: 3961-75. PMID 24163312 DOI: 10.1105/Tpc.113.118174 |
0.43 |
|
| 2013 |
Qiu H, Price DC, Weber AP, Facchinelli F, Yoon HS, Bhattacharya D. Assessing the bacterial contribution to the plastid proteome. Trends in Plant Science. 18: 680-7. PMID 24139901 DOI: 10.1016/J.Tplants.2013.09.007 |
0.521 |
|
| 2013 |
Qiu H, Price DC, Weber AP, Reeb V, Yang EC, Lee JM, Kim SY, Yoon HS, Bhattacharya D. Adaptation through horizontal gene transfer in the cryptoendolithic red alga Galdieria phlegrea. Current Biology : Cb. 23: R865-6. PMID 24112977 DOI: 10.1016/J.Cub.2013.08.046 |
0.603 |
|
| 2013 |
Qiu H, Yoon HS, Bhattacharya D. Algal endosymbionts as vectors of horizontal gene transfer in photosynthetic eukaryotes. Frontiers in Plant Science. 4: 366. PMID 24065973 DOI: 10.3389/Fpls.2013.00366 |
0.658 |
|
| 2013 |
Drake JL, Massa T, Haramaty L, Zelzion E, Bhattacharya D, Falkowski PG. Reply to Ramos-Silva et al.: Regarding coral skeletal proteome. Proceedings of the National Academy of Sciences of the United States of America. 110: E2147-8. PMID 23905183 DOI: 10.1073/Pnas.1304591110 |
0.374 |
|
| 2013 |
DePriest MS, Bhattacharya D, López-Bautista JM. The plastid genome of the red macroalga Grateloupia taiwanensis (Halymeniaceae). Plos One. 8: e68246. PMID 23894297 DOI: 10.1371/Journal.Pone.0068246 |
0.614 |
|
| 2013 |
Skorupa DJ, Reeb V, Castenholz RW, Bhattacharya D, McDermott TR. Cyanidiales diversity in Yellowstone National Park. Letters in Applied Microbiology. 57: 459-66. PMID 23865641 DOI: 10.1111/Lam.12135 |
0.401 |
|
| 2013 |
Shoguchi E, Shinzato C, Kawashima T, Gyoja F, Mungpakdee S, Koyanagi R, Takeuchi T, Hisata K, Tanaka M, Fujiwara M, Hamada M, Seidi A, Fujie M, Usami T, Goto H, ... ... Bhattacharya D, et al. Draft assembly of the Symbiodinium minutum nuclear genome reveals dinoflagellate gene structure. Current Biology : Cb. 23: 1399-408. PMID 23850284 DOI: 10.1016/J.Cub.2013.05.062 |
0.637 |
|
| 2013 |
Gross J, Wajid S, Price DC, Zelzion E, Li J, Chan CX, Bhattacharya D. Evidence for widespread exonic small RNAs in the glaucophyte alga Cyanophora paradoxa. Plos One. 8: e67669. PMID 23844054 DOI: 10.1371/Journal.Pone.0067669 |
0.474 |
|
| 2013 |
Bhattacharya D, Price DC, Chan CX, Qiu H, Rose N, Ball S, Weber AP, Arias MC, Henrissat B, Coutinho PM, Krishnan A, Zäuner S, Morath S, Hilliou F, Egizi A, et al. Genome of the red alga Porphyridium purpureum. Nature Communications. 4: 1941. PMID 23770768 DOI: 10.1038/Ncomms2931 |
0.631 |
|
| 2013 |
Mass T, Drake JL, Haramaty L, Kim JD, Zelzion E, Bhattacharya D, Falkowski PG. Cloning and characterization of four novel coral acid-rich proteins that precipitate carbonates in vitro. Current Biology : Cb. 23: 1126-31. PMID 23746634 DOI: 10.1016/J.Cub.2013.05.007 |
0.456 |
|
| 2013 |
Bhattacharya D, Pelletreau KN, Price DC, Sarver KE, Rumpho ME. Genome analysis of Elysia chlorotica Egg DNA provides no evidence for horizontal gene transfer into the germ line of this Kleptoplastic Mollusc. Molecular Biology and Evolution. 30: 1843-52. PMID 23645554 DOI: 10.1093/Molbev/Mst084 |
0.602 |
|
| 2013 |
Drake JL, Mass T, Haramaty L, Zelzion E, Bhattacharya D, Falkowski PG. Proteomic analysis of skeletal organic matrix from the stony coral Stylophora pistillata. Proceedings of the National Academy of Sciences of the United States of America. 110: 3788-93. PMID 23431140 DOI: 10.1073/Pnas.1301419110 |
0.474 |
|
| 2013 |
Ball SG, Subtil A, Bhattacharya D, Moustafa A, Weber AP, Gehre L, Colleoni C, Arias MC, Cenci U, Dauvillée D. Metabolic effectors secreted by bacterial pathogens: essential facilitators of plastid endosymbiosis? The Plant Cell. 25: 7-21. PMID 23371946 DOI: 10.1105/Tpc.112.101329 |
0.477 |
|
| 2013 |
Georgi L, Johnson-Cicalese J, Honig J, Das SP, Rajah VD, Bhattacharya D, Bassil N, Rowland LJ, Polashock J, Vorsa N. The first genetic map of the American cranberry: exploration of synteny conservation and quantitative trait loci. Tag. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. 126: 673-92. PMID 23224333 DOI: 10.1007/S00122-012-2010-8 |
0.476 |
|
| 2013 |
Facchinelli F, Pribil M, Oster U, Ebert NJ, Bhattacharya D, Leister D, Weber AP. Proteomic analysis of the Cyanophora paradoxa muroplast provides clues on early events in plastid endosymbiosis. Planta. 237: 637-51. PMID 23212214 DOI: 10.1007/S00425-012-1819-3 |
0.476 |
|
| 2013 |
Hackett JD, Wisecaver JH, Brosnahan ML, Kulis DM, Anderson DM, Bhattacharya D, Plumley FG, Erdner DL. Evolution of saxitoxin synthesis in cyanobacteria and dinoflagellates. Molecular Biology and Evolution. 30: 70-8. PMID 22628533 DOI: 10.1093/Molbev/Mss142 |
0.831 |
|
| 2012 |
Chan CX, Blouin NA, Zhuang Y, Zäuner S, Prochnik SE, Lindquist E, Lin S, Benning C, Lohr M, Yarish C, Gantt E, Grossman AR, Lu S, Müller K, W Stiller J, ... ... Bhattacharya D, et al. Porphyra (Bangiophyceae) Transcriptomes Provide Insights Into Red Algal Development And Metabolism. Journal of Phycology. 48: 1328-1342. PMID 27009986 DOI: 10.1111/J.1529-8817.2012.01229.X |
0.553 |
|
| 2012 |
Chan CX, Soares MB, Bonaldo MF, Wisecaver JH, Hackett JD, Anderson DM, Erdner DL, Bhattacharya D. ANALYSIS OF ALEXANDRIUM TAMARENSE (DINOPHYCEAE) GENES REVEALS THE COMPLEX EVOLUTIONARY HISTORY OF A MICROBIAL EUKARYOTE(). Journal of Phycology. 48: 1130-1142. PMID 23066170 DOI: 10.1111/J.1529-8817.2012.01194.X |
0.837 |
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| 2012 |
Chan CX, Bhattacharya D, Reyes-Prieto A. Endosymbiotic and horizontal gene transfer in microbial eukaryotes: Impacts on cell evolution and the tree of life. Mobile Genetic Elements. 2: 101-105. PMID 22934244 DOI: 10.4161/Mge.20110 |
0.592 |
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| 2012 |
Qiu H, Yang EC, Bhattacharya D, Yoon HS. Ancient gene paralogy may mislead inference of plastid phylogeny. Molecular Biology and Evolution. 29: 3333-43. PMID 22617952 DOI: 10.1093/Molbev/Mss137 |
0.647 |
|
| 2012 |
Bhattacharya D, Price DC, Yoon HS, Yang EC, Poulton NJ, Andersen RA, Das SP. Single cell genome analysis supports a link between phagotrophy and primary plastid endosymbiosis. Scientific Reports. 2: 356. PMID 22493757 DOI: 10.1038/Srep00356 |
0.546 |
|
| 2012 |
Price DC, Chan CX, Yoon HS, Yang EC, Qiu H, Weber AP, Schwacke R, Gross J, Blouin NA, Lane C, Reyes-Prieto A, Durnford DG, Neilson JA, Lang BF, Burger G, ... ... Bhattacharya D, et al. Cyanophora paradoxa genome elucidates origin of photosynthesis in algae and plants. Science (New York, N.Y.). 335: 843-7. PMID 22344442 DOI: 10.1126/Science.1213561 |
0.59 |
|
| 2012 |
Chan CX, Zäuner S, Wheeler G, Grossman AR, Prochnik SE, Blouin NA, Zhuang Y, Benning C, Berg GM, Yarish C, Eriksen RL, Klein AS, Lin S, Levine I, Brawley SH, ... Bhattacharya D, et al. Analysis of Porphyra membrane transporters demonstrates gene transfer among photosynthetic eukaryotes and numerous sodium-coupled transport systems. Plant Physiology. 158: 2001-12. PMID 22337920 DOI: 10.1104/Pp.112.193896 |
0.501 |
|
| 2012 |
Salcedo T, Upadhyay RJ, Nagasaki K, Bhattacharya D. Dozens of toxin-related genes are expressed in a nontoxic strain of the dinoflagellate Heterocapsa circularisquama. Molecular Biology and Evolution. 29: 1503-6. PMID 22319156 DOI: 10.1093/Molbev/Mss007 |
0.504 |
|
| 2012 |
Steiner JM, Bhattacharya D, Löffelhardt W. Conservative sorting in the muroplasts of Cyanophora paradoxa: A reevaluation based on the completed genome sequence Symbiosis. 58: 127-133. DOI: 10.1007/S13199-012-0203-1 |
0.468 |
|
| 2011 |
Chan CX, Reyes-Prieto A, Bhattacharya D. Red and green algal origin of diatom membrane transporters: insights into environmental adaptation and cell evolution. Plos One. 6: e29138. PMID 22195008 DOI: 10.1371/Journal.Pone.0029138 |
0.625 |
|
| 2011 |
Bhattacharya D. As an evolutionary biologist. Debashish Bhattacharya. Current Biology : Cb. 21: R676-7. PMID 22053333 DOI: 10.1016/J.Cub.2011.06.013 |
0.502 |
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| 2011 |
Chan CX, Bhattacharya D. Non-random sharing of Plantae genes. Communicative & Integrative Biology. 4: 361-3. PMID 21980581 DOI: 10.4161/Cib.4.3.15700 |
0.63 |
|
| 2011 |
Yoon HS, Price DC, Stepanauskas R, Rajah VD, Sieracki ME, Wilson WH, Yang EC, Duffy S, Bhattacharya D. Single-cell genomics reveals organismal interactions in uncultivated marine protists. Science (New York, N.Y.). 332: 714-7. PMID 21551060 DOI: 10.1126/Science.1203163 |
0.51 |
|
| 2011 |
Pelletreau KN, Bhattacharya D, Price DC, Worful JM, Moustafa A, Rumpho ME. Sea slug kleptoplasty and plastid maintenance in a metazoan. Plant Physiology. 155: 1561-5. PMID 21346171 DOI: 10.1104/Pp.111.174078 |
0.393 |
|
| 2011 |
Chan CX, Gross J, Yoon HS, Bhattacharya D. Plastid origin and evolution: new models provide insights into old problems. Plant Physiology. 155: 1552-60. PMID 21343425 DOI: 10.1104/Pp.111.173500 |
0.585 |
|
| 2011 |
Gross J, Bhattacharya D. Endosymbiont or host: who drove mitochondrial and plastid evolution? Biology Direct. 6: 12. PMID 21333023 DOI: 10.1186/1745-6150-6-12 |
0.465 |
|
| 2011 |
Chan CX, Yang EC, Banerjee T, Yoon HS, Martone PT, Estevez JM, Bhattacharya D. Red and green algal monophyly and extensive gene sharing found in a rich repertoire of red algal genes. Current Biology : Cb. 21: 328-33. PMID 21315598 DOI: 10.1016/J.Cub.2011.01.037 |
0.636 |
|
| 2011 |
Rumpho ME, Pelletreau KN, Moustafa A, Bhattacharya D. The making of a photosynthetic animal. The Journal of Experimental Biology. 214: 303-11. PMID 21177950 DOI: 10.1242/Jeb.046540 |
0.484 |
|
| 2011 |
Reeb V, Kolel A, McDermott TR, Bhattacharya D. Good to the bone: microbial community thrives within bone cavities of a bison carcass at Yellowstone National Park. Environmental Microbiology. 13: 2403-15. PMID 21044237 DOI: 10.1111/J.1462-2920.2010.02359.X |
0.392 |
|
| 2010 |
Boo SM, Kim HS, Shin W, Boo GH, Cho SM, Jo BY, Kim JH, Kim JH, Yang EC, Siver PA, Wolfe AP, Bhattacharya D, Andersen RA, Yoon HS. Complex phylogeographic patterns in the freshwater alga Synura provide new insights into ubiquity vs. endemism in microbial eukaryotes. Molecular Ecology. 19: 4328-38. PMID 25241409 DOI: 10.1111/J.1365-294X.2010.04813.X |
0.53 |
|
| 2010 |
Gross J, Bhattacharya D. Uniting sex and eukaryote origins in an emerging oxygenic world. Biology Direct. 5: 53. PMID 20731852 DOI: 10.1186/1745-6150-5-53 |
0.446 |
|
| 2010 |
Moustafa A, Evans AN, Kulis DM, Hackett JD, Erdner DL, Anderson DM, Bhattacharya D. Transcriptome profiling of a toxic dinoflagellate reveals a gene-rich protist and a potential impact on gene expression due to bacterial presence. Plos One. 5: e9688. PMID 20300646 DOI: 10.1371/Journal.Pone.0009688 |
0.769 |
|
| 2010 |
Reyes-Prieto A, Yoon HS, Moustafa A, Yang EC, Andersen RA, Boo SM, Nakayama T, Ishida K, Bhattacharya D. Differential gene retention in plastids of common recent origin. Molecular Biology and Evolution. 27: 1530-7. PMID 20123796 DOI: 10.1093/Molbev/Msq032 |
0.66 |
|
| 2010 |
Reyes-Prieto A, Yoon HS, Bhattacharya D. Marine Algal Genomics and Evolution Encyclopedia of Ocean Sciences. 552-559. DOI: 10.1016/B978-012374473-9.00779-7 |
0.425 |
|
| 2009 |
Bhattacharya D. The origin and evolution of protist group I introns. Protist. 149: 113-22. PMID 23196160 DOI: 10.1016/S1434-4610(98)70015-X |
0.441 |
|
| 2009 |
Rumpho ME, Pochareddy S, Worful JM, Summer EJ, Bhattacharya D, Pelletreau KN, Tyler MS, Lee J, Manhart JR, Soule KM. Molecular characterization of the Calvin cycle enzyme phosphoribulokinase in the stramenopile alga Vaucheria litorea and the plastid hosting mollusc Elysia chlorotica. Molecular Plant. 2: 1384-96. PMID 19995736 DOI: 10.1093/Mp/Ssp085 |
0.522 |
|
| 2009 |
Borchert GM, Gilmore BL, Spengler RM, Xing Y, Lanier W, Bhattacharya D, Davidson BL. Adenosine deamination in human transcripts generates novel microRNA binding sites. Human Molecular Genetics. 18: 4801-7. PMID 19776031 DOI: 10.1093/Hmg/Ddp443 |
0.402 |
|
| 2009 |
Moustafa A, Beszteri B, Maier UG, Bowler C, Valentin K, Bhattacharya D. Genomic footprints of a cryptic plastid endosymbiosis in diatoms. Science (New York, N.Y.). 324: 1724-6. PMID 19556510 DOI: 10.1126/Science.1172983 |
0.641 |
|
| 2009 |
Gross J, Bhattacharya D. Mitochondrial and plastid evolution in eukaryotes: an outsiders' perspective. Nature Reviews. Genetics. 10: 495-505. PMID 19506574 DOI: 10.1038/Nrg2610 |
0.454 |
|
| 2009 |
Moustafa A, Loram JE, Hackett JD, Anderson DM, Plumley FG, Bhattacharya D. Origin of saxitoxin biosynthetic genes in cyanobacteria. Plos One. 4: e5758. PMID 19484122 DOI: 10.1371/Journal.Pone.0005758 |
0.759 |
|
| 2009 |
Yoon HS, Nakayama T, Reyes-Prieto A, Andersen RA, Boo SM, Ishida K, Bhattacharya D. A single origin of the photosynthetic organelle in different Paulinella lineages. Bmc Evolutionary Biology. 9: 98. PMID 19439085 DOI: 10.1186/1471-2148-9-98 |
0.488 |
|
| 2009 |
Reeb VC, Peglar MT, Yoon HS, Bai JR, Wu M, Shiu P, Grafenberg JL, Reyes-Prieto A, Rümmele SE, Gross J, Bhattacharya D. Interrelationships of chromalveolates within a broadly sampled tree of photosynthetic protists. Molecular Phylogenetics and Evolution. 53: 202-11. PMID 19398025 DOI: 10.1016/J.Ympev.2009.04.012 |
0.538 |
|
| 2009 |
Worden AZ, Lee JH, Mock T, Rouzé P, Simmons MP, Aerts AL, Allen AE, Cuvelier ML, Derelle E, Everett MV, Foulon E, Grimwood J, Gundlach H, Henrissat B, Napoli C, ... ... Bhattacharya D, et al. Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas. Science (New York, N.Y.). 324: 268-72. PMID 19359590 DOI: 10.1126/Science.1167222 |
0.633 |
|
| 2009 |
Soares MB, de Fatima Bonaldo M, Hackett JD, Bhattacharya D. Expressed sequence tags: normalization and subtraction of cDNA libraries expressed sequence tags\ normalization and subtraction of cDNA libraries. Methods in Molecular Biology (Clifton, N.J.). 533: 109-22. PMID 19277560 DOI: 10.1007/978-1-60327-136-3_6 |
0.757 |
|
| 2009 |
Gross J, Bhattacharya D. Revaluating the evolution of the Toc and Tic protein translocons. Trends in Plant Science. 14: 13-20. PMID 19042148 DOI: 10.1016/J.Tplants.2008.10.003 |
0.454 |
|
| 2009 |
Wu M, Comeron JM, Yoon HS, Bhattacharya D. Unexpected dynamic gene family evolution in algal actins. Molecular Biology and Evolution. 26: 249-53. PMID 19008527 DOI: 10.1093/Molbev/Msn263 |
0.553 |
|
| 2009 |
Van Dolah FM, Lidie KB, Monroe EA, Bhattacharya D, Campbell L, Doucette GJ, Kamykowski D. The Florida red tide dinoflagellate Karenia brevis: New insights into cellular and molecular processes underlying bloom dynamics Harmful Algae. 8: 562-572. DOI: 10.1016/J.Hal.2008.11.004 |
0.434 |
|
| 2008 |
Phillips N, Calhoun S, Moustafa A, Bhattacharya D, Braun EL. GENOMIC INSIGHTS INTO EVOLUTIONARY RELATIONSHIPS AMONG HETEROKONT LINEAGES EMPHASIZING THE PHAEOPHYCEAE(1). Journal of Phycology. 44: 15-8. PMID 27041034 DOI: 10.1111/J.1529-8817.2007.00435.X |
0.602 |
|
| 2008 |
Bhattacharya D, Nosenko T. ENDOSYMBIOTIC AND HORIZONTAL GENE TRANSFER IN CHROMALVEOLATES(1). Journal of Phycology. 44: 7-10. PMID 27041032 DOI: 10.1111/J.1529-8817.2007.00433.X |
0.836 |
|
| 2008 |
Moustafa A, Chan CX, Danforth M, Zear D, Ahmed H, Jadhav N, Savage T, Bhattacharya D. A phylogenomic approach for studying plastid endosymbiosis. Genome Informatics. International Conference On Genome Informatics. 21: 165-76. PMID 19425156 |
0.57 |
|
| 2008 |
Rumpho ME, Worful JM, Lee J, Kannan K, Tyler MS, Bhattacharya D, Moustafa A, Manhart JR. Horizontal gene transfer of the algal nuclear gene psbO to the photosynthetic sea slug Elysia chlorotica. Proceedings of the National Academy of Sciences of the United States of America. 105: 17867-71. PMID 19004808 DOI: 10.1073/Pnas.0804968105 |
0.645 |
|
| 2008 |
Frommolt R, Werner S, Paulsen H, Goss R, Wilhelm C, Zauner S, Maier UG, Grossman AR, Bhattacharya D, Lohr M. Ancient recruitment by chromists of green algal genes encoding enzymes for carotenoid biosynthesis. Molecular Biology and Evolution. 25: 2653-67. PMID 18799712 DOI: 10.1093/Molbev/Msn206 |
0.628 |
|
| 2008 |
Grosskurth SE, Bhattacharya D, Wang Q, Lin JJ. Emergence of Xin demarcates a key innovation in heart evolution. Plos One. 3: e2857. PMID 18682726 DOI: 10.1371/Journal.Pone.0002857 |
0.492 |
|
| 2008 |
Reyes-Prieto A, Moustafa A, Bhattacharya D. Multiple genes of apparent algal origin suggest ciliates may once have been photosynthetic. Current Biology : Cb. 18: 956-62. PMID 18595706 DOI: 10.1016/J.Cub.2008.05.042 |
0.64 |
|
| 2008 |
Moustafa A, Reyes-Prieto A, Bhattacharya D. Chlamydiae has contributed at least 55 genes to Plantae with predominantly plastid functions. Plos One. 3: e2205. PMID 18493612 DOI: 10.1371/Journal.Pone.0002205 |
0.659 |
|
| 2008 |
Lanier W, Moustafa A, Bhattacharya D, Comeron JM. EST analysis of Ostreococcus lucimarinus, the most compact eukaryotic genome, shows an excess of introns in highly expressed genes. Plos One. 3: e2171. PMID 18478122 DOI: 10.1371/Journal.Pone.0002171 |
0.583 |
|
| 2008 |
Gross J, Meurer J, Bhattacharya D. Evidence of a chimeric genome in the cyanobacterial ancestor of plastids. Bmc Evolutionary Biology. 8: 117. PMID 18433492 DOI: 10.1186/1471-2148-8-117 |
0.592 |
|
| 2008 |
Yoon HS, Grant J, Tekle YI, Wu M, Chaon BC, Cole JC, Logsdon JM, Patterson DJ, Bhattacharya D, Katz LA. Broadly sampled multigene trees of eukaryotes. Bmc Evolutionary Biology. 8: 14. PMID 18205932 DOI: 10.1186/1471-2148-8-14 |
0.54 |
|
| 2008 |
Moustafa A, Bhattacharya D. PhyloSort: a user-friendly phylogenetic sorting tool and its application to estimating the cyanobacterial contribution to the nuclear genome of Chlamydomonas. Bmc Evolutionary Biology. 8: 6. PMID 18194581 DOI: 10.1186/1471-2148-8-6 |
0.61 |
|
| 2008 |
Zhang H, Bhattacharya D, Maranda L, Lin S. Mitochondrial cob and cox1 genes and editing of the corresponding mRNAs in Dinophysis acuminata from Narragansett Bay, with special reference to the phylogenetic position of the genus Dinophysis. Applied and Environmental Microbiology. 74: 1546-54. PMID 18165361 DOI: 10.1128/Aem.02103-07 |
0.534 |
|
| 2008 |
Moustafa A, Chan CX, Danforth M, Zear D, Ahmed H, Jadhav N, Savage T, Bhattacharya D. A phylogenomic approach for studying plastid endosymbiosis. Genome Informatics. 21: 165-176. DOI: 10.11234/Gi1990.21.165 |
0.548 |
|
| 2007 |
Bhattacharya D, Archibald JM, Weber AP, Reyes-Prieto A. How do endosymbionts become organelles? Understanding early events in plastid evolution. Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology. 29: 1239-46. PMID 18027391 DOI: 10.1002/Bies.20671 |
0.533 |
|
| 2007 |
Tyra HM, Linka M, Weber AP, Bhattacharya D. Host origin of plastid solute transporters in the first photosynthetic eukaryotes. Genome Biology. 8: R212. PMID 17919328 DOI: 10.1186/Gb-2007-8-10-R212 |
0.512 |
|
| 2007 |
Zhang H, Bhattacharya D, Lin S. A three-gene dinoflagellate phylogeny suggests monophyly of prorocentrales and a basal position for amphidinium and heterocapsa. Journal of Molecular Evolution. 65: 463-74. PMID 17896067 DOI: 10.1007/S00239-007-9038-4 |
0.557 |
|
| 2007 |
Nosenko T, Bhattacharya D. Horizontal gene transfer in chromalveolates. Bmc Evolutionary Biology. 7: 173. PMID 17894863 DOI: 10.1186/1471-2148-7-173 |
0.834 |
|
| 2007 |
Reyes-Prieto A, Bhattacharya D. Phylogeny of nuclear-encoded plastid-targeted proteins supports an early divergence of glaucophytes within Plantae. Molecular Biology and Evolution. 24: 2358-61. PMID 17827169 DOI: 10.1093/Molbev/Msm186 |
0.567 |
|
| 2007 |
Haugen P, Bhattacharya D, Palmer JD, Turner S, Lewis LA, Pryer KM. Cyanobacterial ribosomal RNA genes with multiple, endonuclease-encoding group I introns. Bmc Evolutionary Biology. 7: 159. PMID 17825109 DOI: 10.1186/1471-2148-7-159 |
0.541 |
|
| 2007 |
Reyes-Prieto A, Weber AP, Bhattacharya D. The origin and establishment of the plastid in algae and plants. Annual Review of Genetics. 41: 147-68. PMID 17600460 DOI: 10.1146/Annurev.Genet.41.110306.130134 |
0.624 |
|
| 2007 |
Hackett JD, Yoon HS, Li S, Reyes-Prieto A, Rümmele SE, Bhattacharya D. Phylogenomic analysis supports the monophyly of cryptophytes and haptophytes and the association of rhizaria with chromalveolates. Molecular Biology and Evolution. 24: 1702-13. PMID 17488740 DOI: 10.1093/Molbev/Msm089 |
0.797 |
|
| 2007 |
Reyes-Prieto A, Bhattacharya D. Phylogeny of Calvin cycle enzymes supports Plantae monophyly. Molecular Phylogenetics and Evolution. 45: 384-91. PMID 17482838 DOI: 10.1016/J.Ympev.2007.02.026 |
0.495 |
|
| 2007 |
Reeb V, Haugen P, Bhattacharya D, Lutzoni F. Evolution of Pleopsidium (lichenized Ascomycota) S943 group I introns and the phylogeography of an intron-encoded putative homing endonuclease. Journal of Molecular Evolution. 64: 285-98. PMID 17294323 DOI: 10.1007/S00239-005-0179-Z |
0.538 |
|
| 2007 |
Nosenko T, Boese B, Bhattacharya D. PULSED-FIELD GEL ELECTROPHORESIS ANALYSIS OF GENOME SIZE AND STRUCTURE INPAVLOVA GYRANSANDDIACRONEMASP. (HAPTOPHYTA)1 Journal of Phycology. 43: 763-767. DOI: 10.1111/J.1529-8817.2007.00365.X |
0.798 |
|
| 2007 |
Hackett JD, Su Yoon H, Butterfield NJ, Sanderson MJ, Bhattacharya D. Plastid Endosymbiosis. Sources and Timing of the Major Events. Evolution of Primary Producers in the Sea. 109-132. DOI: 10.1016/B978-012370518-1/50008-4 |
0.591 |
|
| 2006 |
Parfrey LW, Barbero E, Lasser E, Dunthorn M, Bhattacharya D, Patterson DJ, Katz LA. Evaluating support for the current classification of eukaryotic diversity. Plos Genetics. 2: e220. PMID 17194223 DOI: 10.1371/Journal.Pgen.0020220 |
0.472 |
|
| 2006 |
Reyes-Prieto A, Hackett JD, Soares MB, Bonaldo MF, Bhattacharya D. Cyanobacterial contribution to algal nuclear genomes is primarily limited to plastid functions. Current Biology : Cb. 16: 2320-5. PMID 17141613 DOI: 10.1016/J.Cub.2006.09.063 |
0.791 |
|
| 2006 |
Yoon HS, Ciniglia C, Wu M, Comeron JM, Pinto G, Pollio A, Bhattacharya D. Establishment of endolithic populations of extremophilic Cyanidiales (Rhodophyta). Bmc Evolutionary Biology. 6: 78. PMID 17022817 DOI: 10.1186/1471-2148-6-78 |
0.496 |
|
| 2006 |
Yoon HS, Reyes-Prieto A, Melkonian M, Bhattacharya D. Minimal plastid genome evolution in the Paulinella endosymbiont. Current Biology : Cb. 16: R670-2. PMID 16950085 DOI: 10.1016/J.Cub.2006.08.018 |
0.448 |
|
| 2006 |
Lin S, Zhang H, Hou Y, Miranda L, Bhattacharya D. Development of a dinoflagellate-oriented PCR primer set leads to detection of picoplanktonic dinoflagellates from Long Island Sound. Applied and Environmental Microbiology. 72: 5626-30. PMID 16885319 DOI: 10.1128/Aem.00586-06 |
0.469 |
|
| 2006 |
Nosenko T, Lidie KL, Van Dolah FM, Lindquist E, Cheng JF, Bhattacharya D. Chimeric plastid proteome in the Florida "red tide" dinoflagellate Karenia brevis. Molecular Biology and Evolution. 23: 2026-38. PMID 16877498 DOI: 10.1093/Molbev/Msl074 |
0.834 |
|
| 2006 |
Weber AP, Linka M, Bhattacharya D. Single, ancient origin of a plastid metabolite translocator family in Plantae from an endomembrane-derived ancestor. Eukaryotic Cell. 5: 609-12. PMID 16524915 DOI: 10.1128/Ec.5.3.609-612.2006 |
0.538 |
|
| 2006 |
Li S, Nosenko T, Hackett JD, Bhattacharya D. Phylogenomic analysis identifies red algal genes of endosymbiotic origin in the chromalveolates. Molecular Biology and Evolution. 23: 663-74. PMID 16357039 DOI: 10.1093/Molbev/Msj075 |
0.847 |
|
| 2006 |
Adrian R, Yoon H, Bhattacharya D. Phylogenomics and its Growing Impact on Algal Phylogeny and Evolution Algae. 21: 1-10. DOI: 10.4490/Algae.2006.21.1.001 |
0.546 |
|
| 2006 |
Yoon HS, Muller KM, Sheath RG, Ott FD, Bhattacharya D. DEFINING THE MAJOR LINEAGES OF RED ALGAE (RHODOPHYTA)1 Journal of Phycology. 42: 482-492. DOI: 10.1111/J.1529-8817.2006.00210.X |
0.415 |
|
| 2006 |
Bhattacharya D, Archibald JM. Response to Theissen and Martin Current Biology. 16: R1017-R1018. DOI: 10.1016/J.Cub.2006.11.021 |
0.422 |
|
| 2006 |
Yoon HS, Hackett JD, Bhattacharya D. A genomic and phylogenetic perspective on endosymbiosis and algal origin Journal of Applied Phycology. 18: 475-481. DOI: 10.1007/S10811-006-9054-6 |
0.776 |
|
| 2005 |
Bhattacharya D, Reeb V, Simon DM, Lutzoni F. Phylogenetic analyses suggest reverse splicing spread of group I introns in fungal ribosomal DNA. Bmc Evolutionary Biology. 5: 68. PMID 16300679 DOI: 10.1186/1471-2148-5-68 |
0.467 |
|
| 2005 |
Hackett JD, Scheetz TE, Yoon HS, Soares MB, Bonaldo MF, Casavant TL, Bhattacharya D. Insights into a dinoflagellate genome through expressed sequence tag analysis. Bmc Genomics. 6: 80. PMID 15921535 DOI: 10.1186/1471-2164-6-80 |
0.796 |
|
| 2005 |
Simon D, Moline J, Helms G, Friedl T, Bhattacharya D. Divergent histories of rDNA group I introns in the lichen family Physciaceae. Journal of Molecular Evolution. 60: 434-46. PMID 15883879 DOI: 10.1007/S00239-004-0152-2 |
0.539 |
|
| 2005 |
Simon DM, Hummel CL, Sheeley SL, Bhattacharya D. Heterogeneity of intron presence or absence in rDNA genes of the lichen species Physcia aipolia and P. stellaris. Current Genetics. 47: 389-99. PMID 15868149 DOI: 10.1007/S00294-005-0581-5 |
0.51 |
|
| 2005 |
Bhattacharya D, Katz LA. Frontiers in genomics: insights into protist evolutionary biology, University of Iowa, May 19-21, 2004. The Journal of Eukaryotic Microbiology. 52: 170-2. PMID 15817122 DOI: 10.1111/J.1550-7408.2005.05-3355.X |
0.551 |
|
| 2005 |
Yoon HS, Hackett JD, Van Dolah FM, Nosenko T, Lidie KL, Bhattacharya D. Tertiary endosymbiosis driven genome evolution in dinoflagellate algae. Molecular Biology and Evolution. 22: 1299-308. PMID 15746017 DOI: 10.1093/Molbev/Msi118 |
0.851 |
|
| 2005 |
Haugen P, Simon DM, Bhattacharya D. The natural history of group I introns. Trends in Genetics : Tig. 21: 111-9. PMID 15661357 DOI: 10.1016/J.Tig.2004.12.007 |
0.471 |
|
| 2005 |
Zhang H, Bhattacharya D, Lin S. PHYLOGENY OF DINOFLAGELLATES BASED ON MITOCHONDRIAL CYTOCHROME B AND NUCLEAR SMALL SUBUNIT RDNA SEQUENCE COMPARISONS1 Journal of Phycology. 41: 411-420. DOI: 10.1111/J.1529-8817.2005.04168.X |
0.383 |
|
| 2004 |
Hackett JD, Anderson DM, Erdner DL, Bhattacharya D. Dinoflagellates: a remarkable evolutionary experiment. American Journal of Botany. 91: 1523-34. PMID 21652307 DOI: 10.3732/Ajb.91.10.1523 |
0.794 |
|
| 2004 |
Hagopian JC, Reis M, Kitajima JP, Bhattacharya D, de Oliveira MC. Comparative analysis of the complete plastid genome sequence of the red alga Gracilaria tenuistipitata var. liui provides insights into the evolution of rhodoplasts and their relationship to other plastids. Journal of Molecular Evolution. 59: 464-77. PMID 15638458 DOI: 10.1007/S00239-004-2638-3 |
0.629 |
|
| 2004 |
Haugen P, Runge HJ, Bhattacharya D. Long-term evolution of the S788 fungal nuclear small subunit rRNA group I introns. Rna (New York, N.Y.). 10: 1084-96. PMID 15208444 DOI: 10.1261/Rna.5202704 |
0.464 |
|
| 2004 |
Ciniglia C, Yoon HS, Pollio A, Pinto G, Bhattacharya D. Hidden biodiversity of the extremophilic Cyanidiales red algae. Molecular Ecology. 13: 1827-1838. PMID 15189206 DOI: 10.1111/J.1365-294X.2004.02180.X |
0.562 |
|
| 2004 |
Bhattacharya D, Medlin LK. Dating algal origin using molecular clock methods. Protist. 155: 9-10. PMID 15144051 DOI: 10.1078/1434461000157 |
0.379 |
|
| 2004 |
Haugen P, Bhattacharya D. The spread of LAGLIDADG homing endonuclease genes in rDNA. Nucleic Acids Research. 32: 2049-57. PMID 15069127 DOI: 10.1093/Nar/Gkh520 |
0.547 |
|
| 2004 |
Williford A, Stay B, Bhattacharya D. Evolution of a novel function: nutritive milk in the viviparous cockroach, Diploptera punctata. Evolution & Development. 6: 67-77. PMID 15009119 DOI: 10.1111/J.1525-142X.2004.04012.X |
0.527 |
|
| 2004 |
Yoon HS, Hackett JD, Ciniglia C, Pinto G, Bhattacharya D. A molecular timeline for the origin of photosynthetic eukaryotes. Molecular Biology and Evolution. 21: 809-18. PMID 14963099 DOI: 10.1093/Molbev/Msh075 |
0.752 |
|
| 2004 |
Hackett JD, Yoon HS, Soares MB, Bonaldo MF, Casavant TL, Scheetz TE, Nosenko T, Bhattacharya D. Migration of the plastid genome to the nucleus in a peridinin dinoflagellate. Current Biology : Cb. 14: 213-8. PMID 14761653 DOI: 10.1016/J.Cub.2004.01.032 |
0.853 |
|
| 2004 |
Bhattacharya D, Yoon HS, Hackett JD. Photosynthetic eukaryotes unite: endosymbiosis connects the dots. Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology. 26: 50-60. PMID 14696040 DOI: 10.1002/Bies.10376 |
0.755 |
|
| 2004 |
Haugen P, Reeb V, Lutzoni F, Bhattacharya D. The evolution of homing endonuclease genes and group I introns in nuclear rDNA. Molecular Biology and Evolution. 21: 129-40. PMID 14595099 DOI: 10.1093/Molbev/Msh005 |
0.521 |
|
| 2003 |
Simon D, Fewer D, Friedl T, Bhattacharya D. Phylogeny and self-splicing ability of the plastid tRNA-Leu group I Intron. Journal of Molecular Evolution. 57: 710-20. PMID 14745540 DOI: 10.1007/S00239-003-2533-3 |
0.507 |
|
| 2003 |
Bhattacharya D, Simon D, Huang J, Cannone JJ, Gutell RR. The exon context and distribution of Euascomycetes rRNA spliceosomal introns. Bmc Evolutionary Biology. 3: 7. PMID 12716459 DOI: 10.1186/1471-2148-3-7 |
0.477 |
|
| 2003 |
Hackett JD, Maranda L, Yoon HS, Bhattacharya D. Phylogenetic evidence for the cryptophyte origin of the plastid of Dinophysis (Dinophysiales, Dinophyceae) Journal of Phycology. 39: 440-448. DOI: 10.1046/J.1529-8817.2003.02100.X |
0.705 |
|
| 2002 |
Hartmann S, Nason JD, Bhattacharya D. Phylogenetic origins of Lophocereus (Cactaceae) and the senita cactus-senita moth pollination mutualism. American Journal of Botany. 89: 1085-92. PMID 21665708 DOI: 10.3732/Ajb.89.7.1085 |
0.749 |
|
| 2002 |
Yoon HS, Hackett JD, Pinto G, Bhattacharya D. The single, ancient origin of chromist plastids. Proceedings of the National Academy of Sciences of the United States of America. 99: 15507-12. PMID 12438651 DOI: 10.1073/Pnas.242379899 |
0.77 |
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| 2002 |
Yoon HS, Hackett JD, Bhattacharya D. A single origin of the peridinin- and fucoxanthin-containing plastids in dinoflagellates through tertiary endosymbiosis. Proceedings of the National Academy of Sciences of the United States of America. 99: 11724-9. PMID 12172008 DOI: 10.1073/Pnas.172234799 |
0.745 |
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| 2002 |
Bhattacharya D, Friedl T, Helms G. Vertical evolution and intragenic spread of lichen-fungal group I introns. Journal of Molecular Evolution. 55: 74-84. PMID 12165844 DOI: 10.1007/S00239-001-2305-X |
0.521 |
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| 2002 |
Yoon HS, Hackett JD, Bhattacharya D. The Monophyletic Origin of the Peridinin-, and Fucoxanthin-Containing Dinoflagellate Plastid Through Tertiary Replacement Journal of Phycology. 38: 40-40. DOI: 10.1046/J.1529-8817.38.S1.7.X |
0.765 |
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| 2002 |
Hackett JD, Maranda L, Bhattacharya D. The Plastid of Dinophysis (Dinophyceae): Phylogenetic Evidence for a Permanent Replacement Journal of Phycology. 38: 14-14. DOI: 10.1046/J.1529-8817.38.S1.41.X |
0.705 |
|
| 2001 |
Yoon HS, Lee JY, Boo SM, Bhattacharya D. Phylogeny of Alariaceae, Laminariaceae, and Lessoniaceae (Phaeophyceae) based on plastid-encoded RuBisCo spacer and nuclear-encoded ITS sequence comparisons Molecular Phylogenetics and Evolution. 21: 231-243. PMID 11697918 DOI: 10.1006/Mpev.2001.1009 |
0.556 |
|
| 2001 |
Hartmann S, Nason JD, Bhattacharya D. Extensive ribosomal DNA genic variation in the columnar cactus Lophocereus. Journal of Molecular Evolution. 53: 124-34. PMID 11479683 DOI: 10.1007/S002390010200 |
0.749 |
|
| 2001 |
Stibitz TB, Keeling PJ, Bhattacharya D. Symbiotic origin of a novel actin gene in the cryptophyte Pyrenomonas helgolandii. Molecular Biology and Evolution. 17: 1731-8. PMID 11070060 DOI: 10.1093/Oxfordjournals.Molbev.A026271 |
0.621 |
|
| 2001 |
Müller KM, Oliveira MC, Sheath RG, Bhattacharya D. Ribosomal DNA phylogeny of the Bangiophycidae (Rhodophyta) and the origin of secondary plastids. American Journal of Botany. 88: 1390-1400. DOI: 10.2307/3558445 |
0.462 |
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| 2000 |
Bhattacharya D, Oliveira MC. The ssu rDNA coding region of a filose amoeba contains a group I intron lacking the universally conserved g at the 3'-terminus Journal of Eukaryotic Microbiology. 47: 585-589. PMID 11128712 DOI: 10.1111/J.1550-7408.2000.Tb00094.X |
0.493 |
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| 2000 |
Bhattacharya D, Lutzoni F, Reeb V, Simon D, Nason J, Fernandez F. Widespread occurrence of spliceosomal introns in the rDNA genes of ascomycetes. Molecular Biology and Evolution. 17: 1971-84. PMID 11110913 DOI: 10.1093/Oxfordjournals.Molbev.A026298 |
0.52 |
|
| 2000 |
Karabinos A, Bhattacharya D. Molecular evolution of calmodulin and calmodulin-like genes in the cephalochordate Branchiostoma Journal of Molecular Evolution. 51: 141-148. PMID 10948270 DOI: 10.1007/S002390010074 |
0.584 |
|
| 2000 |
Friedl T, Besendahl A, Pfeiffer P, Bhattacharya D. The distribution of group I introns in lichen algae suggests that lichenization facilitates intron lateral transfer. Molecular Phylogenetics and Evolution. 14: 342-52. PMID 10712840 DOI: 10.1006/Mpev.1999.0711 |
0.548 |
|
| 2000 |
Besendahl A, Qiu YL, Lee J, Palmer JD, Bhattacharya D. The cyanobacterial origin and vertical transmission of the plastid tRNA(Leu) group-I intron Current Genetics. 37: 12-23. PMID 10672439 DOI: 10.1007/S002940050002 |
0.559 |
|
| 2000 |
Bhattacharya D, Aubry J, Twait EC, Jurk S. ACTIN GENE DUPLICATION AND THE EVOLUTION OF MORPHOLOGICAL COMPLEXITY IN LAND PLANTS Journal of Phycology. 36: 813-820. DOI: 10.1046/J.1529-8817.2000.03655.X |
0.444 |
|
| 2000 |
Bhattacharya D, Lutzoni F, Reeb V, Simon D, Fernandez F, Friedl T. USING RDNA GENES TO UNDERSTAND THE ORIGIN AND EVOLUTION OF SPLICEOSOMAL AND GROUP I INTRONS Journal of Phycology. 36: 6-7. DOI: 10.1046/J.1529-8817.1999.00001-18.X |
0.455 |
|
| 2000 |
Oliveira MC, Bhattacharya D. Phylogeny of the Bangiophycidae (Rhodophyta) and the secondary endosymbiotic origin of algal plastids American Journal of Botany. 87: 482-492. DOI: 10.1046/J.1529-8817.1999.00001-155.X |
0.45 |
|
| 1999 |
Albert S, Bhattacharya D, Klaudiny J, Schmitzová J, Simúth J. The family of major royal jelly proteins and its evolution. Journal of Molecular Evolution. 49: 290-7. PMID 10441680 DOI: 10.1007/Pl00006551 |
0.501 |
|
| 1999 |
An SS, Möpps B, Weber K, Bhattacharya D. The origin and evolution of green algal and plant actins Molecular Biology and Evolution. 16: 275-285. PMID 10028293 DOI: 10.1093/Oxfordjournals.Molbev.A026109 |
0.579 |
|
| 1999 |
Besendahl A, Bhattacharya D. EVOLUTIONARY ANALYSES OF SMALL-SUBUNIT rDNA CODING REGIONS AND THE 1506 GROUP I INTRONS OF THE ZYGNEMATALES (CHAROPHYCEAE, STREPTOPHYTA) Journal of Phycology. 35: 560-569. DOI: 10.1046/J.1529-8817.1999.3530560.X |
0.388 |
|
| 1998 |
Bhattacharya D, Weber K, An SS, Berning-Koch W. Actin phylogeny identifies Mesostigma viride as a flagellate ancestor of the land plants Journal of Molecular Evolution. 47: 544-550. PMID 9797404 DOI: 10.1007/Pl00006410 |
0.576 |
|
| 1998 |
Karabinos A, Bhattacharya D, Kratzin HD, Hilschmann N. Origin of the NEFA and Nuc signal sequences. Journal of Molecular Evolution. 46: 327-33. PMID 9493357 DOI: 10.1007/Pl00006309 |
0.473 |
|
| 1998 |
Bhattacharya D, Medlin aL. Algal Phylogeny and the Origin of Land Plants Plant Physiology. 116: 9-15. DOI: 10.1104/Pp.116.1.9 |
0.358 |
|
| 1997 |
Bhattacharya D, Weber K. The actin gene of the glaucocystophyte Cyanophora paradoxa: Analysis of the coding region and introns, and an actin phylogeny of eukaryotes Current Genetics. 31: 439-446. PMID 9162116 DOI: 10.1007/S002940050227 |
0.518 |
|
| 1996 |
Bhattacharya D. Analysis of the distribution of bootstrap tree lengths using the maximum parsimony method Molecular Phylogenetics and Evolution. 6: 339-350. PMID 8975690 DOI: 10.1006/Mpev.1996.0084 |
0.464 |
|
| 1996 |
Karabinos A, Bhattacharya D, Morys-Wortmann C, Kroll K, Hirschfeld G, Kratzin HD, Barnikol-Watanabe S, Hilschmann N. The divergent domains of the NEFA and nucleobindin proteins are derived from an EF-hand ancestor Molecular Biology and Evolution. 13: 990-998. PMID 8752007 DOI: 10.1093/Oxfordjournals.Molbev.A025667 |
0.459 |
|
| 1996 |
Bhattacharya D, Friedl T, Damberger S. Nuclear-encoded rDNA group I introns: origin and phylogenetic relationships of insertion site lineages in the green algae. Molecular Biology and Evolution. 13: 978-989. PMID 8752006 DOI: 10.1093/Oxfordjournals.Molbev.A025666 |
0.553 |
|
| 1996 |
Bhattacharya D, Damberger S, Surek B, Melkonian M. Primary and secondary structure analyses of the rDNA group-I introns of the Zygnematales (Charophyta). Current Genetics. 29: 282-6. PMID 8595675 DOI: 10.1007/Bf02221559 |
0.501 |
|
| 1995 |
Bhattacharya D, Helmchen T, Bibeau C, Melkonian M. Comparisons of nuclear-encoded small-subunit ribosomal RNAs reveal the evolutionary position of the Glaucocystophyta. Molecular Biology and Evolution. 12: 415-420. PMID 7739383 DOI: 10.1093/Oxfordjournals.Molbev.A040216 |
0.509 |
|
| 1995 |
Bhattacharya D, Helmchen T, Melkonian M. Molecular Evolutionary Analyses of Nuclear‐Encoded Small Subunit Ribosomal RNA Identify an Independent Rhizopod Lineage Containing the Euglyphina and the Chlorarachniophyta Journal of Eukaryotic Microbiology. 42: 65-69. PMID 7728141 DOI: 10.1111/J.1550-7408.1995.Tb01541.X |
0.503 |
|
| 1995 |
Helmchen TA, Bhattacharya D, Melkonian M. Analyses of ribosomal RNA sequences from glaucocystophyte cyanelles provide new insights into the evolutionary relationships of plastids. Journal of Molecular Evolution. 41: 203-10. PMID 7666450 DOI: 10.1007/Bf00170674 |
0.515 |
|
| 1995 |
Bhattacharya D, Ehlting J. Actin Coding Regions: Gene Family Evolution and Use as a Phylogenetic Marker Archiv FüR Protistenkunde. 145: 155-164. DOI: 10.1016/S0003-9365(11)80312-X |
0.404 |
|
| 1994 |
Bhattacharya D, Steinkötter J, Melkonian M. Molecular cloning and evolutionary analysis of the calcium-modulated contractile protein, centrin, in green algae and land plants. Plant Molecular Biology. 23: 1243-54. PMID 8292788 DOI: 10.1007/Bf00042357 |
0.486 |
|
| 1994 |
Bhattacharya D, Stickel SK. Sequence analysis of duplicated actin genes in Lagenidium giganteum and Pythium irregulare (Oomycota) Journal of Molecular Evolution. 39: 56-61. PMID 8064873 DOI: 10.1007/BF00178249 |
0.469 |
|
| 1994 |
Bhattacharya D, Surek B, Rusing M, Damberger S, Melkonian M. Group I introns are inherited through common ancestry in the nuclear-encoded rRNA of Zygnematales (Charophyceae). Proceedings of the National Academy of Sciences of the United States of America. 91: 9916-9920. PMID 7937917 DOI: 10.1073/Pnas.91.21.9916 |
0.56 |
|
| 1994 |
Steinkotter J, Bhattacharya D, Semmelroth I, Bibeau C, Melkonian M. PRASINOPHYTES FORM INDEPENDENT LINEAGES WITHIN THE CHLOROPHYTA: EVIDENCE FROM RIBOSOMAL RNA SEQUENCE COMPARISONS1 Journal of Phycology. 30: 340-345. DOI: 10.1111/J.0022-3646.1994.00340.X |
0.365 |
|
| 1992 |
Bhattacharya D, Medlin L, Wainright PO, Ariztia EV, Bibeau C, Stickel SK, Sogin ML. ALGAE CONTAINING CHLOROPHYLLS a + c ARE PARAPHYLETIC: MOLECULAR EVOLUTIONARY ANALYSIS OF THE CHROMOPHYTA. Evolution; International Journal of Organic Evolution. 46: 1801-1817. PMID 28567775 DOI: 10.1111/J.1558-5646.1992.Tb01170.X |
0.455 |
|
| 1991 |
Bhattacharya D, Stickel SK, Sogin ML. Molecular phylogenetic analysis of actin genic regions from Achlya bisexualis (Oomycota) and Costaria costata (Chromophyta) Journal of Molecular Evolution. 33: 525-536. PMID 1779434 DOI: 10.1007/Bf02102805 |
0.429 |
|
| 1990 |
Bhattacharya D, Elwood HJ, Goff LJ, Sogin ML. PHYLOGENY OF GRACILARIA LEMANEIFORMIS (RHODOPHYTA) BASED ON SEQUENCE ANALYSIS OF ITS SMALL SUBUNIT RIBOSOMAL RNA CODING REGION1 Journal of Phycology. 26: 181-186. DOI: 10.1111/J.0022-3646.1990.00181.X |
0.302 |
|
| 1988 |
Bhattacharya D, Druehl LD. PHYCOGENETIC COMPARISON OF THE SMALL-SUBUNIT RIBOSOMAL DNA SEQUENCE OF COSTARIA COSTATA (PHAEOPHYTA) WITH THOSE OF OTHER ALGAE, VASCULAR PLANTS AND OOMYCETES Journal of Phycology. 24: 539-543. DOI: 10.1111/J.1529-8817.1988.Tb04259.X |
0.401 |
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