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Bahman Afsari - Publications

Affiliations: 
Electrical and Computer Engineering Johns Hopkins University, Baltimore, MD 
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16 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Davis-Marcisak EF, Sherman TD, Orugunta P, Stein-O'Brien GL, Puram SV, Roussos Torres ET, Hopkins AC, Jaffee EM, Favorov AV, Afsari B, Goff LA, Fertig EJ. Differential variation analysis enables detection of tumor heterogeneity using single-cell RNA-sequencing data. Cancer Research. PMID 31337651 DOI: 10.1158/0008-5472.Can-18-3882  0.384
2019 Davis-Marcisak EF, Orugunta P, Stein-O'Brien G, Puram SV, Torres ER, Hopkins A, Jaffee EM, Favorov AV, Afsari B, Goff LA, Fertig EJ. Abstract 4697: Expression variation analysis for tumor heterogeneity in single-cell RNA-sequencing data Cancer Research. DOI: 10.1158/1538-7445.Sabcs18-4697  0.319
2018 Springer SU, Chen CH, Rodriguez Pena MDC, Li L, Douville C, Wang Y, Cohen JD, Taheri D, Silliman N, Schaefer J, Ptak J, Dobbyn L, Papoli M, Kinde I, Afsari B, et al. Correction: Non-invasive detection of urothelial cancer through the analysis of driver gene mutations and aneuploidy. Elife. 7. PMID 30418154 DOI: 10.7554/Elife.43237  0.409
2018 Wang Y, Li L, Douville C, Cohen JD, Yen TT, Kinde I, Sundfelt K, Kjær SK, Hruban RH, Shih IM, Wang TL, Kurman RJ, Springer S, Ptak J, Popoli M, ... ... Afsari B, et al. Evaluation of liquid from the Papanicolaou test and other liquid biopsies for the detection of endometrial and ovarian cancers. Science Translational Medicine. 10. PMID 29563323 DOI: 10.1126/Scitranslmed.Aap8793  0.395
2018 Springer SU, Chen CH, Rodriguez Pena MDC, Li L, Douville C, Wang Y, Cohen JD, Taheri D, Silliman N, Schaefer J, Ptak J, Dobbyn L, Papoli M, Kinde I, Afsari B, et al. Non-invasive detection of urothelial cancer through the analysis of driver gene mutations and aneuploidy. Elife. 7. PMID 29557778 DOI: 10.7554/Elife.32143  0.43
2018 Cohen JD, Li L, Wang Y, Thoburn C, Afsari B, Danilova L, Douville C, Javed AA, Wong F, Mattox A, Hruban RH, Wolfgang CL, Goggins MG, Dal Molin M, Wang TL, et al. Detection and localization of surgically resectable cancers with a multi-analyte blood test. Science (New York, N.Y.). PMID 29348365 DOI: 10.1126/Science.Aar3247  0.393
2018 Afsari B, Guo T, Considine M, Florea L, Kagohara LT, Stein-O'Brien GL, Kelley D, Flam E, Zambo KD, Ha PK, Geman D, Ochs MF, Califano JA, Gaykalova DA, Favorov AV, et al. Splice Expression Variation Analysis (SEVA) for Inter-tumor Heterogeneity of Gene Isoform Usage in Cancer. Bioinformatics (Oxford, England). PMID 29342249 DOI: 10.1093/Bioinformatics/Bty004  0.475
2018 Wang Y, Li L, Douville C, Cohen JD, Yen TT, Kinde I, Sundfelt K, Kjær SK, Hruban RH, Shih IM, Wang T, Kurman RJ, Springer S, Ptak J, Popoli M, ... ... Afsari B, et al. Evaluation of liquid from the papanicolaou test and other liquid biopsies for the detection of endometrial and ovarian cancers Obstetrical & Gynecological Survey. 73: 463-464. DOI: 10.1097/01.Ogx.0000542325.60681.A3  0.308
2017 Kelley DZ, Flam E, Izumchenko E, Danilova L, Wulf HA, Guo T, Singman DA, Afsari B, Skaist A, Considine M, Stavrovskaya E, Bishop JA, Westra WH, Khan Z, Koch WM, et al. Integrated analysis of whole-genome ChIP-Seq and RNA-Seq data of primary head and neck tumor samples associates HPV integration sites with open chromatin marks. Cancer Research. PMID 28947419 DOI: 10.1158/0008-5472.Can-17-0833  0.404
2017 Guo T, Sakai A, Afsari B, Considine M, Danilova L, Favorov AV, Yegnasubramanian S, Kelley DZ, Flam E, Ha PK, Khan Z, Wheelan SJ, Gutkind JS, Fertig EJ, Gaykalova DA, et al. A novel functional splice variant of AKT3 defined by analysis of alternative splice expression in HPV-positive oropharyngeal cancers. Cancer Research. PMID 28733453 DOI: 10.1158/0008-5472.Can-16-3106  0.399
2017 Afsari B, Guo T, Considine M, Kelley D, Flam E, Florea L, Ha P, Geman D, Ochs MF, Califano JA, Gaykalova DA, Favorov AV, Fertig EJ. Abstract 3577: Splice expression variation analysis (SEVA) for differential gene isoform usage in cancer Cancer Research. 77: 3577-3577. DOI: 10.1158/1538-7445.Am2017-3577  0.445
2014 Afsari B, Geman D, Fertig EJ. Learning dysregulated pathways in cancers from differential variability analysis. Cancer Informatics. 13: 61-7. PMID 25392694 DOI: 10.4137/Cin.S14066  0.397
2014 Afsari B, Braga-Neto UM, Geman D. Rank discriminants for predicting phenotypes from RNA expression Annals of Applied Statistics. 8: 1469-1491. DOI: 10.1214/14-Aoas738  0.439
2014 Afsari B, Fertig EJ, Younes L, Geman D, Marchionni L. Abstract 5342: Hardwiring mechanism into predicting cancer phenotypes by computational learning Cancer Research. 74: 5342-5342. DOI: 10.1158/1538-7445.Am2014-5342  0.428
2013 Marchionni L, Afsari B, Geman D, Leek JT. A simple and reproducible breast cancer prognostic test. Bmc Genomics. 14: 336. PMID 23682826 DOI: 10.1186/1471-2164-14-336  0.406
2009 Lin X, Afsari B, Marchionni L, Cope L, Parmigiani G, Naiman D, Geman D. The ordering of expression among a few genes can provide simple cancer biomarkers and signal BRCA1 mutations. Bmc Bioinformatics. 10: 256. PMID 19695104 DOI: 10.1186/1471-2105-10-256  0.459
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