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Zaid Abdo, Ph.D. - Publications

Affiliations: 
2005 University of Idaho, Moscow, ID, United States 
Area:
Statistics, Biostatistics Biology, Molecular Biology, Genetics
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38 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Pepin KM, Golnar AJ, Abdo Z, Podgórski T. Ecological drivers of African swine fever virus persistence in wild boar populations: Insight for control. Ecology and Evolution. 10: 2846-2859. PMID 32211160 DOI: 10.1002/Ece3.6100  0.339
2019 Oladeinde A, Cook K, Lakin SM, Woyda R, Abdo Z, Looft T, Herrington K, Zock G, Lawrence JP, Thomas JC, Beaudry MS, Glenn T. Horizontal gene transfer and acquired antibiotic resistance in . Heidelberg following incubation in broiler ceca. Applied and Environmental Microbiology. PMID 31471306 DOI: 10.1128/Aem.01903-19  0.302
2018 Noyes N, Cho KC, Ravel J, Forney LJ, Abdo Z. Associations between sexual habits, menstrual hygiene practices, demographics and the vaginal microbiome as revealed by Bayesian network analysis. Plos One. 13: e0191625. PMID 29364944 DOI: 10.1371/Journal.Pone.0191625  0.307
2017 Noyes NR, Weinroth ME, Parker JK, Dean CJ, Lakin SM, Raymond RA, Rovira P, Doster E, Abdo Z, Martin JN, Jones KL, Ruiz J, Boucher CA, Belk KE, Morley PS. Enrichment allows identification of diverse, rare elements in metagenomic resistome-virulome sequencing. Microbiome. 5: 142. PMID 29041965 DOI: 10.1186/S40168-017-0361-8  0.317
2017 Owen JR, Noyes N, Young AE, Prince DJ, Blanchard PC, Lehenbauer TW, Aly SS, Davis JH, O'Rourke SM, Abdo Z, Belk K, Miller MR, Morley P, Van Eenennaam A. Whole-Genome Sequencing and Concordance Between Antimicrobial Susceptibility Genotypes and Phenotypes of Bacterial Isolates Associated with Bovine Respiratory Disease. G3 (Bethesda, Md.). PMID 28739600 DOI: 10.1534/G3.117.1137  0.326
2017 Joyce P, Abdo Z. Determining the distribution of fitness effects using a generalized Beta-Burr distribution. Theoretical Population Biology. PMID 28709927 DOI: 10.1016/J.Tpb.2017.07.001  0.562
2013 Hou D, Zhou X, Zhong X, Settles ML, Herring J, Wang L, Abdo Z, Forney LJ, Xu C. Microbiota of the seminal fluid from healthy and infertile men. Fertility and Sterility. 100: 1261-9. PMID 23993888 DOI: 10.1016/J.Fertnstert.2013.07.1991  0.33
2013 Hickey RJ, Abdo Z, Zhou X, Nemeth K, Hansmann M, Osborn TW, Wang F, Forney LJ. Effects of tampons and menses on the composition and diversity of vaginal microbial communities over time. Bjog : An International Journal of Obstetrics and Gynaecology. 120: 695-704; discussion . PMID 23398859 DOI: 10.1111/1471-0528.12151  0.325
2013 Abdo Z, Stein M, Wojtowicz A, Pepin KM. The ABCs of Experimental Evolution Isrn Computational Biology. 2013: 1-7. DOI: 10.1155/2013/467943  0.34
2012 Brotman RM, Bradford LL, Conrad M, Gajer P, Ault K, Peralta L, Forney LJ, Carlton JM, Abdo Z, Ravel J. Association between Trichomonas vaginalis and vaginal bacterial community composition among reproductive-age women. Sexually Transmitted Diseases. 39: 807-12. PMID 23007708 DOI: 10.1097/Olq.0B013E3182631C79  0.304
2012 Hughes JM, Lohman BK, Deckert GE, Nichols EP, Settles M, Abdo Z, Top EM. The role of clonal interference in the evolutionary dynamics of plasmid-host adaptation. Mbio. 3: e00077-12. PMID 22761390 DOI: 10.1128/Mbio.00077-12  0.349
2012 Gajer P, Brotman RM, Bai G, Sakamoto J, Schütte UM, Zhong X, Koenig SS, Fu L, Ma ZS, Zhou X, Abdo Z, Forney LJ, Ravel J. Temporal dynamics of the human vaginal microbiota. Science Translational Medicine. 4: 132ra52. PMID 22553250 DOI: 10.1126/Scitranslmed.3003605  0.32
2012 Yuan S, Cohen DB, Ravel J, Abdo Z, Forney LJ. Evaluation of methods for the extraction and purification of DNA from the human microbiome. Plos One. 7: e33865. PMID 22457796 DOI: 10.1371/Journal.Pone.0033865  0.315
2011 Ma ZS, Abdo Z, Forney LJ. Caring about trees in the forest: incorporating frailty in risk analysis for personalized medicine. Personalized Medicine. 8: 681-688. PMID 22754581 DOI: 10.2217/Pme.11.72  0.315
2011 Hunt KM, Foster JA, Forney LJ, Schütte UM, Beck DL, Abdo Z, Fox LK, Williams JE, McGuire MK, McGuire MA. Characterization of the diversity and temporal stability of bacterial communities in human milk. Plos One. 6: e21313. PMID 21695057 DOI: 10.1371/Journal.Pone.0021313  0.322
2011 Stewart JE, Kawabe M, Abdo Z, Arie T, Peever TL. Contrasting codon usage patterns and purifying selection at the mating locus in putatively asexual alternaria fungal species. Plos One. 6: e20083. PMID 21625561 DOI: 10.1371/Journal.Pone.0020083  0.346
2011 Brotman R, Jones LL, Sakamoto J, Gajer P, Ault K, Peralta L, Forney L, Abdo Z, Ravel J. O1-S05.05 Association between Trichomonas vaginalis and vaginal bacterial community composition among asymptomatic reproductive-age women in the USA Sexually Transmitted Infections. 87: A33-A34. DOI: 10.1136/Sextrans-2011-050109.29  0.31
2011 Ravel J, Brotman R, Gajer P, Sakamoto J, Koenig S, Fu L, Zhou X, Abdo Z, Forney L, Ravel J. P4-S4.04 Temporal dynamics of vaginal bacterial communities Sexually Transmitted Infections. 87: A316-A317. DOI: 10.1136/Sextrans-2011-050108.529  0.351
2010 Zhou X, Brotman RM, Gajer P, Abdo Z, Schüette U, Ma S, Ravel J, Forney LJ. Recent advances in understanding the microbiology of the female reproductive tract and the causes of premature birth. Infectious Diseases in Obstetrics and Gynecology. 2010: 737425. PMID 21197076 DOI: 10.1155/2010/737425  0.307
2010 Shen XJ, Rawls JF, Randall T, Burcal L, Mpande CN, Jenkins N, Jovov B, Abdo Z, Sandler RS, Keku TO. Molecular characterization of mucosal adherent bacteria and associations with colorectal adenomas. Gut Microbes. 1: 138-47. PMID 20740058 DOI: 10.4161/Gmic.1.3.12360  0.303
2010 Sota M, Yano H, Hughes JM, Daughdrill GW, Abdo Z, Forney LJ, Top EM. Shifts in the host range of a promiscuous plasmid through parallel evolution of its replication initiation protein. The Isme Journal. 4: 1568-80. PMID 20520653 DOI: 10.1038/Ismej.2010.72  0.302
2010 Ripplinger J, Abdo Z, Sullivan J. Effects of parameter estimation on maximum-likelihood bootstrap analysis. Molecular Phylogenetics and Evolution. 56: 642-8. PMID 20434567 DOI: 10.1016/J.Ympev.2010.04.035  0.393
2010 Schütte UM, Abdo Z, Foster J, Ravel J, Bunge J, Solheim B, Forney LJ. Bacterial diversity in a glacier foreland of the high Arctic. Molecular Ecology. 19: 54-66. PMID 20331770 DOI: 10.1111/J.1365-294X.2009.04479.X  0.327
2009 Rokyta DR, Abdo Z, Wichman HA. The genetics of adaptation for eight microvirid bacteriophages. Journal of Molecular Evolution. 69: 229-39. PMID 19693424 DOI: 10.1007/S00239-009-9267-9  0.312
2009 Schütte UM, Abdo Z, Bent SJ, Williams CJ, Schneider GM, Solheim B, Forney LJ. Bacterial succession in a glacier foreland of the High Arctic. The Isme Journal. 3: 1258-68. PMID 19587774 DOI: 10.1038/Ismej.2009.71  0.329
2009 Buzbas EO, Joyce P, Abdo Z. Estimation of selection intensity under overdominance by Bayesian methods. Statistical Applications in Genetics and Molecular Biology. 8: Article32. PMID 19572831 DOI: 10.2202/1544-6115.1466  0.683
2008 Schütte UM, Abdo Z, Bent SJ, Shyu C, Williams CJ, Pierson JD, Forney LJ. Advances in the use of terminal restriction fragment length polymorphism (T-RFLP) analysis of 16S rRNA genes to characterize microbial communities. Applied Microbiology and Biotechnology. 80: 365-80. PMID 18648804 DOI: 10.1007/S00253-008-1565-4  0.316
2008 Heuer H, Abdo Z, Smalla K. Patchy distribution of flexible genetic elements in bacterial populations mediates robustness to environmental uncertainty. Fems Microbiology Ecology. 65: 361-71. PMID 18616581 DOI: 10.1111/J.1574-6941.2008.00539.X  0.337
2007 Zhou X, Brown CJ, Abdo Z, Davis CC, Hansmann MA, Joyce P, Foster JA, Forney LJ. Differences in the composition of vaginal microbial communities found in healthy Caucasian and black women. The Isme Journal. 1: 121-33. PMID 18043622 DOI: 10.1038/Ismej.2007.12  0.557
2007 Abdo Z, Golding GB. A step toward barcoding life: a model-based, decision-theoretic method to assign genes to preexisting species groups. Systematic Biology. 56: 44-56. PMID 17366136 DOI: 10.1080/10635150601167005  0.314
2006 Abdo Z, Schüette UM, Bent SJ, Williams CJ, Forney LJ, Joyce P. Statistical methods for characterizing diversity of microbial communities by analysis of terminal restriction fragment length polymorphisms of 16S rRNA genes. Environmental Microbiology. 8: 929-38. PMID 16623749 DOI: 10.1111/J.1462-2920.2005.00959.X  0.597
2005 Sullivan J, Abdo Z, Joyce P, Swofford DL. Evaluating the performance of a successive-approximations approach to parameter optimization in maximum-likelihood phylogeny estimation. Molecular Biology and Evolution. 22: 1386-92. PMID 15758203 DOI: 10.1093/Molbev/Msi129  0.584
2005 Joyce P, Abdo Z, Ponciano JM, De Gelder L, Forney LJ, Top EM. Modeling the impact of periodic bottlenecks, unidirectional mutation, and observational error in experimental evolution. Journal of Mathematical Biology. 50: 645-62. PMID 15614551 DOI: 10.1007/S00285-004-0300-8  0.586
2005 Abdo Z, Minin VN, Joyce P, Sullivan J. Accounting for uncertainty in the tree topology has little effect on the decision-theoretic approach to model selection in phylogeny estimation. Molecular Biology and Evolution. 22: 691-703. PMID 15548751 DOI: 10.1093/Molbev/Msi050  0.609
2004 De Gelder L, Ponciano JM, Abdo Z, Joyce P, Forney LJ, Top EM. Combining mathematical models and statistical methods to understand and predict the dynamics of antibiotic-sensitive mutants in a population of resistant bacteria during experimental evolution. Genetics. 168: 1131-44. PMID 15579675 DOI: 10.1534/Genetics.104.033431  0.612
2004 Abdo Z, Crandall KA, Joyce P. Evaluating the performance of likelihood methods for detecting population structure and migration. Molecular Ecology. 13: 837-51. PMID 15012759 DOI: 10.1111/J.1365-294X.2004.02132.X  0.598
2003 Minin V, Abdo Z, Joyce P, Sullivan J. Performance-based selection of likelihood models for phylogeny estimation. Systematic Biology. 52: 674-83. PMID 14530134 DOI: 10.1080/10635150390235494  0.612
2001 Araji AA, Abdo ZO, Joyce P. Efficient use of animal manure on cropland--economic analysis. Bioresource Technology. 79: 179-91. PMID 11480927 DOI: 10.1016/S0960-8524(01)00042-6  0.472
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