| Year |
Citation |
Score |
| 2023 |
Choudhery S, DeJesus MA, Srinivasan A, Rock J, Schnappinger D, Ioerger TR. A dose-response based model for statistical analysis of chemical genetic interactions in CRISPRi libraries. Biorxiv : the Preprint Server For Biology. PMID 37577548 DOI: 10.1101/2023.08.03.551759 |
0.719 |
|
| 2022 |
Ioerger TR. Analysis of Gene Essentiality from TnSeq Data Using Transit. Methods in Molecular Biology (Clifton, N.J.). 2377: 391-421. PMID 34709629 DOI: 10.1007/978-1-0716-1720-5_22 |
0.375 |
|
| 2021 |
Choudhery S, Brown AJ, Akusobi C, Rubin EJ, Sassetti CM, Ioerger TR. Modeling Site-Specific Nucleotide Biases Affecting Himar1 Transposon Insertion Frequencies in TnSeq Data Sets. Msystems. e0087621. PMID 34665010 DOI: 10.1128/mSystems.00876-21 |
0.319 |
|
| 2021 |
Dutta E, DeJesus MA, Ruecker N, Zaveri A, Koh EI, Sassetti CM, Schnappinger D, Ioerger TR. An improved statistical method to identify chemical-genetic interactions by exploiting concentration-dependence. Plos One. 16: e0257911. PMID 34597304 DOI: 10.1371/journal.pone.0257911 |
0.733 |
|
| 2019 |
Subramaniyam S, DeJesus MA, Zaveri A, Smith CM, Baker RE, Ehrt S, Schnappinger D, Sassetti CM, Ioerger TR. Statistical analysis of variability in TnSeq data across conditions using zero-inflated negative binomial regression. Bmc Bioinformatics. 20: 603. PMID 31752678 DOI: 10.1186/S12859-019-3156-Z |
0.718 |
|
| 2019 |
Farhat MR, Freschi L, Calderon R, Ioerger T, Snyder M, Meehan CJ, de Jong B, Rigouts L, Sloutsky A, Kaur D, Sunyaev S, van Soolingen D, Shendure J, Sacchettini J, Murray M. GWAS for quantitative resistance phenotypes in Mycobacterium tuberculosis reveals resistance genes and regulatory regions. Nature Communications. 10: 2128. PMID 31086182 DOI: 10.1038/S41467-019-10110-6 |
0.383 |
|
| 2018 |
Tiwari D, Park SW, Essawy MM, Dawadi S, Mason A, Nandakumar M, Zimmerman M, Mina M, Ho HP, Engelhart CA, Ioerger T, Sacchettini JC, Rhee K, Ehrt S, Aldrich CC, et al. Targeting protein biotinylation enhances tuberculosis chemotherapy. Science Translational Medicine. 10. PMID 29695454 DOI: 10.1126/Scitranslmed.Aal1803 |
0.323 |
|
| 2018 |
Negri A, Javidnia P, Mu R, Zhang X, Vendome J, Gold B, Roberts J, Barman D, Ioerger T, Sacchettini JC, Jiang X, Burns-Huang K, Warrier T, Ling Y, Warren JD, et al. Identification of a Mycothiol-Dependent Nitroreductase from Mycobacterium tuberculosis. Acs Infectious Diseases. PMID 29465985 DOI: 10.1021/Acsinfecdis.7B00111 |
0.316 |
|
| 2017 |
Xu W, DeJesus MA, Rücker N, Engelhart CA, Wright MG, Healy C, Lin K, Wang R, Park SW, Ioerger TR, Schnappinger D, Ehrt S. Chemical genomic interaction profiling reveals determinants of intrinsic antibiotic resistance in Mycobacterium tuberculosis. Antimicrobial Agents and Chemotherapy. PMID 28893793 DOI: 10.1128/Aac.01334-17 |
0.717 |
|
| 2017 |
DeJesus MA, Nambi S, Smith CM, Baker RE, Sassetti CM, Ioerger TR. Statistical analysis of genetic interactions in Tn-Seq data. Nucleic Acids Research. PMID 28334803 DOI: 10.1093/Nar/Gkx128 |
0.727 |
|
| 2017 |
DeJesus MA, Gerrick ER, Xu W, Park SW, Long JE, Boutte CC, Rubin EJ, Schnappinger D, Ehrt S, Fortune SM, Sassetti CM, Ioerger TR. Comprehensive Essentiality Analysis of the Mycobacterium tuberculosis Genome via Saturating Transposon Mutagenesis. Mbio. 8. PMID 28096490 DOI: 10.1128/Mbio.02133-16 |
0.726 |
|
| 2017 |
Maxwell S, Wallis D, Zhou N, Baker D, Mousavi-Fard S, Loesch K, Galaviz S, Sun Q, Threadgill D, Rojas C, O'Brien M, Clubb F, Ioerger T, DeJesus M, Dong W, et al. DEVELOPMENT OF NOVEL, NON-TOXIC RIFAMYCINS THAT REVERSE DRUG RESISTANCE IN DIFFUSE LARGE B-CELL LYMPHOMA (DLBCL) Hematological Oncology. 35: 253-254. DOI: 10.1002/hon.2438_118 |
0.659 |
|
| 2016 |
Korte J, Alber M, Trujillo CM, Syson K, Koliwer-Brandl H, Deenen R, Köhrer K, DeJesus MA, Hartman T, Jacobs WR, Bornemann S, Ioerger TR, Ehrt S, Kalscheuer R. Trehalose-6-Phosphate-Mediated Toxicity Determines Essentiality of OtsB2 in Mycobacterium tuberculosis In Vitro and in Mice. Plos Pathogens. 12: e1006043. PMID 27936238 DOI: 10.1371/Journal.Ppat.1006043 |
0.716 |
|
| 2016 |
Orsini CA, Setlow B, DeJesus M, Galaviz S, Loesch K, Ioerger T, Wallis D. Behavioral and transcriptomic profiling of mice null for Lphn3, a gene implicated in ADHD and addiction. Molecular Genetics & Genomic Medicine. 4: 322-43. PMID 27247960 DOI: 10.1002/Mgg3.207 |
0.684 |
|
| 2016 |
Almeida D, Ioerger T, Tyagi S, Li SY, Mdluli K, Andries K, Grosset J, Sacchettini J, Nuermberger E. Mutations in pepQ Confer Low-level Resistance to Bedaquiline and Clofazimine in Mycobacterium tuberculosis. Antimicrobial Agents and Chemotherapy. PMID 27185800 DOI: 10.1128/Aac.00753-16 |
0.335 |
|
| 2016 |
DeJesus MA, Ioerger TR. Normalization of transposon-mutant library sequencing datasets to improve identification of conditionally essential genes. Journal of Bioinformatics and Computational Biology. 1642004. PMID 26932272 DOI: 10.1142/S021972001642004X |
0.731 |
|
| 2015 |
Maksymiuk C, Ioerger T, Balakrishnan A, Bryk R, Rhee K, Sacchettini J, Nathan C. Comparison of transposon and deletion mutants in Mycobacterium tuberculosis: The case of rv1248c, encoding 2-hydroxy-3-oxoadipate synthase. Tuberculosis (Edinburgh, Scotland). 95: 689-94. PMID 26547230 DOI: 10.1016/J.Tube.2015.08.009 |
0.367 |
|
| 2015 |
DeJesus MA, Ambadipudi C, Baker R, Sassetti C, Ioerger TR. TRANSIT - A Software Tool for Himar1 TnSeq Analysis. Plos Computational Biology. 11: e1004401. PMID 26447887 DOI: 10.1371/Journal.Pcbi.1004401 |
0.711 |
|
| 2015 |
DeJesus MA, Ioerger TR. Capturing Uncertainty by Modeling Local Transposon Insertion Frequencies Improves Discrimination of Essential Genes. Ieee/Acm Transactions On Computational Biology and Bioinformatics / Ieee, Acm. 12: 92-102. PMID 26357081 DOI: 10.1109/Tcbb.2014.2326857 |
0.746 |
|
| 2015 |
Loesch K, Galaviz S, Hamoui Z, Clanton R, Akabani G, Deveau M, DeJesus M, Ioerger T, Sacchettini JC, Wallis D. Functional genomics screening utilizing mutant mouse embryonic stem cells identifies novel radiation-response genes. Plos One. 10: e0120534. PMID 25853515 DOI: 10.1371/Journal.Pone.0120534 |
0.717 |
|
| 2015 |
Wallis D, Loesch K, Galaviz S, Sun Q, DeJesus M, Ioerger T, Sacchettini JC. High-Throughput Differentiation and Screening of a Library of Mutant Stem Cell Clones Defines New Host-Based Genes Involved in Rabies Virus Infection. Stem Cells (Dayton, Ohio). 33: 2509-22. PMID 25752821 DOI: 10.1002/Stem.1983 |
0.716 |
|
| 2015 |
Long JE, DeJesus M, Ward D, Baker RE, Ioerger T, Sassetti CM. Identifying essential genes in Mycobacterium tuberculosis by global phenotypic profiling. Methods in Molecular Biology (Clifton, N.J.). 1279: 79-95. PMID 25636614 DOI: 10.1007/978-1-4939-2398-4_6 |
0.742 |
|
| 2014 |
Odingo J, O'Malley T, Kesicki EA, Alling T, Bailey MA, Early J, Ollinger J, Dalai S, Kumar N, Singh RV, Hipskind PA, Cramer JW, Ioerger T, Sacchettini J, Vickers R, et al. Synthesis and evaluation of the 2,4-diaminoquinazoline series as anti-tubercular agents. Bioorganic & Medicinal Chemistry. 22: 6965-79. PMID 25456390 DOI: 10.1016/J.Bmc.2014.10.007 |
0.325 |
|
| 2013 |
DeJesus MA, Ioerger TR. A Hidden Markov Model for identifying essential and growth-defect regions in bacterial genomes from transposon insertion sequencing data. Bmc Bioinformatics. 14: 303. PMID 24103077 DOI: 10.1186/1471-2105-14-303 |
0.742 |
|
| 2013 |
DeJesus MA, Zhang YJ, Sassetti CM, Rubin EJ, Sacchettini JC, Ioerger TR. Bayesian analysis of gene essentiality based on sequencing of transposon insertion libraries. Bioinformatics (Oxford, England). 29: 695-703. PMID 23361328 DOI: 10.1093/Bioinformatics/Btt043 |
0.734 |
|
| 2013 |
DeJesus MA, Sacchettini JC, Ioerger TR. Reannotation of translational start sites in the genome of Mycobacterium tuberculosis. Tuberculosis (Edinburgh, Scotland). 93: 18-25. PMID 23273318 DOI: 10.1016/J.Tube.2012.11.012 |
0.713 |
|
| 2013 |
Dejesus MA, Ioerger TR. Improving discrimination of essential genes by modeling local insertion frequencies in transposon mutagenesis data 2013 Acm Conference On Bioinformatics, Computational Biology and Biomedical Informatics, Acm-Bcb 2013. 144-151. DOI: 10.1145/2506583.2506610 |
0.741 |
|
| 2012 |
Ford C, Yusim K, Ioerger T, Feng S, Chase M, Greene M, Korber B, Fortune S. Mycobacterium tuberculosis - Heterogeneity revealed through whole genome sequencing Tuberculosis. 92: 194-201. PMID 22218163 DOI: 10.1016/J.Tube.2011.11.003 |
0.353 |
|
| 2011 |
Griffin JE, Gawronski JD, Dejesus MA, Ioerger TR, Akerley BJ, Sassetti CM. High-resolution phenotypic profiling defines genes essential for mycobacterial growth and cholesterol catabolism. Plos Pathogens. 7: e1002251. PMID 21980284 DOI: 10.1371/Journal.Ppat.1002251 |
0.742 |
|
| 2007 |
Gopal K, McKee E, Romo T, Pai R, Smith J, Sacchettini J, Ioerger T. Crystallographic protein model-building on the web. Bioinformatics (Oxford, England). 23: 375-7. PMID 17138588 DOI: 10.1093/Bioinformatics/Btl584 |
0.514 |
|
| 2007 |
Gopal K, Ioerger TR. Distance metric learning through optimization of ranking Proceedings - Ieee International Conference On Data Mining, Icdm. 201-206. DOI: 10.1109/ICDMW.2007.113 |
0.476 |
|
| 2006 |
Pai R, Sacchettini J, Ioerger T. Identifying non-crystallographic symmetry in protein electron-density maps: a feature-based approach. Acta Crystallographica. Section D, Biological Crystallography. 62: 1012-21. PMID 16929102 DOI: 10.1107/S0907444906023158 |
0.32 |
|
| 2006 |
Palmer V, Ioerger T. Coalition formation meets information theory Flairs 2006 - Proceedings of the Nineteenth International Florida Artificial Intelligence Research Society Conference. 2006: 98-103. |
0.554 |
|
| 2006 |
Gopal K, Romo TD, McKee EW, Pai R, Smith JN, Sacchettini JC, Ioerger TR. TEXTAL: Crystallographic protein model building using AI and pattern recognition Ai Magazine. 27: 15-24. |
0.464 |
|
| 2005 |
Gopal K, Romo TD, Sacchettini JC, Ioerger TR. Determining relevant features to recognize electron density patterns in x-ray protein crystallography. Journal of Bioinformatics and Computational Biology. 3: 645-76. PMID 16108088 DOI: 10.1142/S0219720005001272 |
0.492 |
|
| 2005 |
Romo T, Gopal K, McKee E, Kanbi L, Pai R, Smith J, Sacchettini J, Ioerger T. TEXTAL: Al-based structural determination for X-ray protein crystallography Ieee Intelligent Systems. 20: 59-63. DOI: 10.1109/Mis.2005.114 |
0.469 |
|
| 2004 |
Gopal K, Romo TD, Sacchettini JC, Ioerger TR. Weighting features to recognize 3D patterns of electron density in X-ray protein crystallography. Proceedings / Ieee Computational Systems Bioinformatics Conference, Csb. Ieee Computational Systems Bioinformatics Conference. 255-65. PMID 16448019 |
0.442 |
|
| 2004 |
Adams PD, Gopal K, Grosse-Kunstleve RW, Hung LW, Ioerger TR, McCoy AJ, Moriarty NW, Pai RK, Read RJ, Romo TD, Sacchettini JC, Sauter NK, Storoni LC, Terwilliger TC. Recent developments in the PHENIX software for automated crystallographic structure determination. Journal of Synchrotron Radiation. 11: 53-5. PMID 14646133 DOI: 10.1107/S0909049503024130 |
0.457 |
|
| 2004 |
Gopal K, Romo TD, Sacchettini JC, Ioerger TR. Efficient retrieval of electron density patterns for modeling proteins by X-ray crystallography Proceedings of the 2004 International Conference On Machine Learning and Applications, Icmla '04. 380-387. |
0.478 |
|
| 2003 |
Widyantoro DH, Ioerger TR, Yen J. Tracking changes in user interests with a few relevance judgments International Conference On Information and Knowledge Management, Proceedings. 548-551. |
0.607 |
|
| 2002 |
Widyantoro DH, Ioerger TR, Yen J. An incremental approach to building a cluster hierarchy Proceedings - Ieee International Conference On Data Mining, Icdm. 705-708. |
0.605 |
|
| 2001 |
Hofle M, Linthicum DS, Ioerger T. Analysis of diversity of nucleotide and amino acid distributions in the VD and DJ joining regions in Ig heavy chains Molecular Immunology. 37: 827-835. PMID 11257304 DOI: 10.1016/S0161-5890(00)00110-3 |
0.325 |
|
| 2001 |
Widyantoro DH, Ioerger TR, Yen J. Learning user interest dynamics with a three-descriptor representation Journal of the American Society For Information Science and Technology. 52: 212-225. DOI: 10.1002/1532-2890(2000)9999:9999<::Aid-Asi1615>3.0.Co;2-O |
0.602 |
|
| 2001 |
Widyantoro DH, Ioerger TR, Yen J. Learning User Interest Dynamics with a Three-Descriptor Representation Journal of the American Society For Information Science and Technology. 52: 212-225. DOI: 10.1002/1532-2890(2000)9999:9999<::AID-ASI1615>3.0.CO;2-O |
0.602 |
|
| 2001 |
Yang L, Widyantoro DH, Ioerger T, Yen J. An entropy-based adaptive genetic algorithm for learning classification rules Proceedings of the Ieee Conference On Evolutionary Computation, Icec. 2: 790-796. |
0.622 |
|
| Low-probability matches (unlikely to be authored by this person) |
| 2019 |
Dragset MS, Ioerger TR, Loevenich M, Haug M, Sivakumar N, Marstad A, Cardona PJ, Klinkenberg G, Rubin EJ, Steigedal M, Flo TH. Global Assessment of Mycobacterium avium subsp. Genetic Requirement for Growth and Virulence. Msystems. 4. PMID 31822597 DOI: 10.1128/mSystems.00402-19 |
0.297 |
|
| 2003 |
Ganesh R, Siegele DA, Ioerger TR. MOPAC: motif finding by preprocessing and agglomerative clustering from microarrays. Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 41-52. PMID 12603016 |
0.286 |
|
| 2012 |
Zhang YJ, Ioerger TR, Huttenhower C, Long JE, Sassetti CM, Sacchettini JC, Rubin EJ. Global assessment of genomic regions required for growth in Mycobacterium tuberculosis. Plos Pathogens. 8: e1002946. PMID 23028335 DOI: 10.1371/Journal.Ppat.1002946 |
0.285 |
|
| 2015 |
DeJesus MA, Ioerger TR. Reducing type i errors in Tn-Seq experiments by correcting the skew in read count distributions Proceedings of the 7th International Conference On Bioinformatics and Computational Biology, Bicob 2015. 45-50. |
0.284 |
|
| 2018 |
Blanc L, Sarathy JP, Alvarez Cabrera N, O'Brien P, Dias-Freedman I, Mina M, Sacchettini J, Savic RM, Gengenbacher M, Podell BK, Prideaux B, Ioerger T, Dick T, Dartois V. Impact of immunopathology on the antituberculous activity of pyrazinamide. The Journal of Experimental Medicine. PMID 30018074 DOI: 10.1084/Jem.20180518 |
0.282 |
|
| 2022 |
Akusobi C, Benghomari BS, Zhu J, Wolf ID, Singhvi S, Dulberger CL, Ioerger TR, Rubin EJ. Transposon mutagenesis in identifies an essential penicillin-binding protein involved in septal peptidoglycan synthesis and antibiotic sensitivity. Elife. 11. PMID 35659317 DOI: 10.7554/eLife.71947 |
0.281 |
|
| 2014 |
Shi X, Festa RA, Ioerger TR, Butler-Wu S, Sacchettini JC, Darwin KH, Samanovic MI. The copper-responsive RicR regulon contributes to Mycobacterium tuberculosis virulence. Mbio. 5. PMID 24549843 DOI: 10.7490/F1000Research.1095241.1 |
0.281 |
|
| 2013 |
Zhang YJ, Ioerger TR, Huttenhower C, Long JE, Sassetti CM, Sacchettini JC, Rubin EJ. Correction: Global Assessment of Genomic Regions Required for Growth in Mycobacterium tuberculosis Plos Pathogens. 9. DOI: 10.1371/Annotation/4669E9E7-Fd12-4A01-Be2A-617B956Ec0Bb |
0.278 |
|
| 2014 |
Lin PL, Ford CB, Coleman MT, Myers AJ, Gawande R, Ioerger T, Sacchettini J, Fortune SM, Flynn JL. Sterilization of granulomas is common in active and latent tuberculosis despite within-host variability in bacterial killing. Nature Medicine. 20: 75-9. PMID 24336248 DOI: 10.1038/Nm.3412 |
0.272 |
|
| 2023 |
Matern WM, Harris HT, Danchik C, McDonald M, Patel G, Srivastava A, Ioerger TR, Bader JS, Karakousis PC. Functional Whole Genome Screen of Nutrient-Starved Identifies Genes Involved in Rifampin Tolerance. Microorganisms. 11. PMID 37764112 DOI: 10.3390/microorganisms11092269 |
0.267 |
|
| 2023 |
Matern WM, Harris HT, Danchik C, McDonald M, Patel G, Srivastava A, Ioerger TR, Bader JS, Karakousis PC. Functional whole genome screen of nutrient-starved identifies genes involved in antibiotic tolerance. Biorxiv : the Preprint Server For Biology. PMID 37090629 DOI: 10.1101/2023.04.12.536593 |
0.266 |
|
| 2020 |
Bellerose MM, Proulx MK, Smith CM, Baker RE, Ioerger TR, Sassetti CM. Distinct Bacterial Pathways Influence the Efficacy of Antibiotics against Mycobacterium tuberculosis. Msystems. 5. PMID 32753506 DOI: 10.1128/mSystems.00396-20 |
0.265 |
|
| 2019 |
Wu KJ, Boutte CC, Ioerger TR, Rubin EJ. Mycobacterium smegmatis HtrA Blocks the Toxic Activity of a Putative Cell Wall Amidase. Cell Reports. 27: 2468-2479.e3. PMID 31116989 DOI: 10.1016/J.Celrep.2018.12.063 |
0.263 |
|
| 2012 |
La Rosa V, Poce G, Canseco JO, Buroni S, Pasca MR, Biava M, Raju RM, Porretta GC, Alfonso S, Battilocchio C, Javid B, Sorrentino F, Ioerger TR, Sacchettini JC, Manetti F, et al. MmpL3 is the cellular target of the antitubercular pyrrole derivative BM212. Antimicrobial Agents and Chemotherapy. 56: 324-31. PMID 22024828 DOI: 10.1128/Aac.05270-11 |
0.263 |
|
| 2013 |
Ioerger TR, O'Malley T, Liao R, Guinn KM, Hickey MJ, Mohaideen N, Murphy KC, Boshoff HI, Mizrahi V, Rubin EJ, Sassetti CM, Barry CE, Sherman DR, Parish T, Sacchettini JC. Identification of new drug targets and resistance mechanisms in Mycobacterium tuberculosis. Plos One. 8: e75245. PMID 24086479 DOI: 10.1371/Journal.Pone.0075245 |
0.261 |
|
| 2020 |
Lai YP, Ioerger TR. Exploiting Homoplasy in Genome-Wide Association Studies to Enhance Identification of Antibiotic-Resistance Mutations in Bacterial Genomes. Evolutionary Bioinformatics Online. 16: 1176934320944932. PMID 32782426 DOI: 10.1177/1176934320944932 |
0.26 |
|
| 2015 |
Lanoix JP, Ioerger T, Ormond A, Kaya F, Sacchettini J, Dartois V, Nuermberger E. Selective Inactivity of Pyrazinamide against Tuberculosis in C3HeB/FeJ Mice Is Best Explained by Neutral pH of Caseum. Antimicrobial Agents and Chemotherapy. 60: 735-43. PMID 26574016 DOI: 10.1128/Aac.01370-15 |
0.257 |
|
| 2016 |
Park Y, Pacitto A, Bayliss T, Cleghorn LA, Wang Z, Hartman T, Arora K, Ioerger TR, Sacchettini J, Rizzi M, Donini S, Blundell TL, Ascher DB, Rhee KY, Breda A, et al. Essential but not vulnerable: indazole sulfonamides targeting inosine monophosphate dehydrogenase as potential leads against Mycobacterium tuberculosis. Acs Infectious Diseases. PMID 27704782 DOI: 10.1021/Acsinfecdis.6B00103 |
0.254 |
|
| 2023 |
Choudhery S, Ioerger TR. Dual ICA to extract interacting sets of genes and conditions from transcriptomic data. Acm-Bcb ... ... : the ... Acm Conference On Bioinformatics, Computational Biology and Biomedicine. Acm Conference On Bioinformatics, Computational Biology and Biomedicine. 2023. PMID 38162633 DOI: 10.1145/3584371.3612968 |
0.249 |
|
| 2020 |
Bandekar AC, Subedi S, Ioerger TR, Sassetti CM. Cell-Cycle-Associated Expression Patterns Predict Gene Function in Mycobacteria. Current Biology : Cb. PMID 32916109 DOI: 10.1016/j.cub.2020.07.070 |
0.237 |
|
| 2023 |
Yadav VD, Boshoff HI, Trifonov L, Roma JSO, Ioerger TR, Barry CE, Oh S. Synthesis and Structure-Activity Relationships of a New Class of Oxadiazoles Targeting DprE1 as Antitubercular Agents. Acs Medicinal Chemistry Letters. 14: 1275-1283. PMID 37736177 DOI: 10.1021/acsmedchemlett.3c00295 |
0.23 |
|
| 2009 |
Ioerger TR, Sacchettini JC. Structural genomics approach to drug discovery for Mycobacterium tuberculosis. Current Opinion in Microbiology. 12: 318-25. PMID 19481971 DOI: 10.1016/J.Mib.2009.04.006 |
0.226 |
|
| 2010 |
Ioerger TR, Feng Y, Ganesula K, Chen X, Dobos KM, Fortune S, Jacobs WR, Mizrahi V, Parish T, Rubin E, Sassetti C, Sacchettini JC. Variation among genome sequences of H37Rv strains of Mycobacterium tuberculosis from multiple laboratories. Journal of Bacteriology. 192: 3645-53. PMID 20472797 DOI: 10.1128/Jb.00166-10 |
0.225 |
|
| 2023 |
Schreier JE, Smith CB, Ioerger TR, Moran MA. A mutant fitness assay identifies bacterial interactions in a model ocean hot spot. Proceedings of the National Academy of Sciences of the United States of America. 120: e2217200120. PMID 36920927 DOI: 10.1073/pnas.2217200120 |
0.224 |
|
| 2019 |
Dragset MS, Ioerger TR, Zhang YJ, Mærk M, Ginbot Z, Sacchettini JC, Flo TH, Rubin EJ, Steigedal M. Genome-wide Phenotypic Profiling Identifies and Categorizes Genes Required for Mycobacterial Low Iron Fitness. Scientific Reports. 9: 11394. PMID 31388080 DOI: 10.1038/S41598-019-47905-Y |
0.223 |
|
| 2009 |
Musa TL, Ioerger TR, Sacchettini JC. The tuberculosis structural genomics consortium: a structural genomics approach to drug discovery. Advances in Protein Chemistry and Structural Biology. 77: 41-76. PMID 20663481 DOI: 10.1016/S1876-1623(09)77003-8 |
0.222 |
|
| 2007 |
Murillo AC, Li HY, Alber T, Baker EN, Berger JM, Cherney LT, Cherney MM, Cho YS, Eisenberg D, Garen CR, Goulding CW, Hung LW, Ioerger TR, Jacobs WR, James MN, et al. High throughput crystallography of TB drug targets. Infectious Disorders Drug Targets. 7: 127-39. PMID 17970224 DOI: 10.2174/187152607781001853 |
0.221 |
|
| 2012 |
James JN, Hasan ZU, Ioerger TR, Brown AC, Personne Y, Carroll P, Ikeh M, Tilston-Lunel NL, Palavecino C, Sacchettini JC, Parish T. Deletion of SenX3-RegX3, a key two-component regulatory system of Mycobacterium smegmatis, results in growth defects under phosphate-limiting conditions. Microbiology (Reading, England). 158: 2724-31. PMID 22956756 DOI: 10.1099/Mic.0.060319-0 |
0.218 |
|
| 2018 |
Carey AF, Rock JM, Krieger IV, Chase MR, Fernandez-Suarez M, Gagneux S, Sacchettini JC, Ioerger TR, Fortune SM. TnSeq of Mycobacterium tuberculosis clinical isolates reveals strain-specific antibiotic liabilities. Plos Pathogens. 14: e1006939. PMID 29505613 DOI: 10.1371/Journal.Ppat.1006939 |
0.215 |
|
| 2010 |
Wang F, Jain P, Gulten G, Liu Z, Feng Y, Ganesula K, Motiwala AS, Ioerger TR, Alland D, Vilchèze C, Jacobs WR, Sacchettini JC. Mycobacterium tuberculosis dihydrofolate reductase is not a target relevant to the antitubercular activity of isoniazid. Antimicrobial Agents and Chemotherapy. 54: 3776-82. PMID 20566771 DOI: 10.1128/Aac.00453-10 |
0.215 |
|
| 2015 |
Kieser KJ, Baranowski C, Chao MC, Long JE, Sassetti CM, Waldor MK, Sacchettini JC, Ioerger TR, Rubin EJ. Peptidoglycan synthesis in Mycobacterium tuberculosis is organized into networks with varying drug susceptibility. Proceedings of the National Academy of Sciences of the United States of America. 112: 13087-92. PMID 26438867 DOI: 10.1073/Pnas.1514135112 |
0.213 |
|
| 2020 |
Rifat D, Li SY, Ioerger T, Shah K, Lanoix JP, Lee J, Bashiri G, Sacchettini J, Nuermberger E. Mutations in () as a novel determinant of resistance to pretomanid and delamanid in . Antimicrobial Agents and Chemotherapy. PMID 33077652 DOI: 10.1128/AAC.01948-20 |
0.213 |
|
| 2020 |
Akester JN, Njaria P, Nchinda AT, Le Manach C, Myrick A, Singh V, Lawrence N, Njoroge M, Taylor D, Moosa A, Smith A, Brooks E, Lenaerts AJ, Robertson GT, Ioerger TR, et al. Synthesis, Structure Activity Relationship and Mechanistic Studies of Aminoquinazolinones Displaying Antimycobacterial Activity. Acs Infectious Diseases. PMID 32470286 DOI: 10.1021/Acsinfecdis.0C00252 |
0.212 |
|
| 2013 |
Gopinath K, Venclovas C, Ioerger TR, Sacchettini JC, McKinney JD, Mizrahi V, Warner DF. A vitamin B₁₂ transporter in Mycobacterium tuberculosis. Open Biology. 3: 120175. PMID 23407640 DOI: 10.1098/Rsob.120175 |
0.209 |
|
| 2018 |
Lai YP, Ioerger TR. A statistical method to identify recombination in bacterial genomes based on SNP incompatibility. Bmc Bioinformatics. 19: 450. PMID 30466385 DOI: 10.1186/s12859-018-2456-z |
0.208 |
|
| 2019 |
Poce G, Consalvi S, Venditti G, Alfonso S, Desideri N, Fernandez-Menendez R, Bates RH, Ballell L, Barros Aguirre D, Rullas J, De Logu A, Gardner M, Ioerger TR, Rubin EJ, Biava M. Novel Pyrazole-Containing Compounds Active against . Acs Medicinal Chemistry Letters. 10: 1423-1429. PMID 31620228 DOI: 10.1021/Acsmedchemlett.9B00204 |
0.207 |
|
| 2012 |
Chia BS, Lanzas F, Rifat D, Herrera A, Kim EY, Sailer C, Torres-Chavolla E, Narayanaswamy P, Einarsson V, Bravo J, Pascale JM, Ioerger TR, Sacchettini JC, Karakousis PC. Use of multiplex allele-specific polymerase chain reaction (MAS-PCR) to detect multidrug-resistant tuberculosis in Panama. Plos One. 7: e40456. PMID 22792333 DOI: 10.1371/Journal.Pone.0040456 |
0.207 |
|
| 2008 |
Reddy MC, Gokulan K, Jacobs WR, Ioerger TR, Sacchettini JC. Crystal structure of Mycobacterium tuberculosis LrpA, a leucine-responsive global regulator associated with starvation response. Protein Science : a Publication of the Protein Society. 17: 159-70. PMID 18042675 DOI: 10.1110/Ps.073192208 |
0.206 |
|
| 2022 |
Pepi MJ, Chacko S, Marqus GM, Singh V, Wang Z, Planck K, Cullinane RT, Meka PN, Gollapalli DR, Ioerger TR, Rhee KY, Cuny GD, Boshoff HIM, Hedstrom L. A d-Phenylalanine-Benzoxazole Derivative Reveals the Role of the Essential Enzyme Rv3603c in the Pantothenate Biosynthetic Pathway of . Acs Infectious Diseases. PMID 35015509 DOI: 10.1021/acsinfecdis.1c00461 |
0.205 |
|
| 2023 |
Koller TO, Scheid U, Kösel T, Herrmann J, Krug D, Boshoff HIM, Beckert B, Evans JC, Schlemmer J, Sloan B, Weiner DM, Via LE, Moosa A, Ioerger TR, Graf M, et al. The Myxobacterial Antibiotic Myxovalargin: Biosynthesis, Structural Revision, Total Synthesis, and Molecular Characterization of Ribosomal Inhibition. Journal of the American Chemical Society. PMID 36603206 DOI: 10.1021/jacs.2c08816 |
0.205 |
|
| 2011 |
Ford CB, Lin PL, Chase MR, Shah RR, Iartchouk O, Galagan J, Mohaideen N, Ioerger TR, Sacchettini JC, Lipsitch M, Flynn JL, Fortune SM. Use of whole genome sequencing to estimate the mutation rate of Mycobacterium tuberculosis during latent infection. Nature Genetics. 43: 482-6. PMID 21516081 DOI: 10.1038/Ng.811 |
0.204 |
|
| 2021 |
Mesman AW, Baek SH, Huang CC, Kim YM, Cho SN, Ioerger TR, Barreda NN, Calderon R, Sassetti CM, Murray MB. Characterization of Drug-Resistant Lipid-Dependent Differentially Detectable . Journal of Clinical Medicine. 10. PMID 34362035 DOI: 10.3390/jcm10153249 |
0.203 |
|
| 2022 |
Carey AF, Wang X, Cicchetti N, Spaulding CN, Liu Q, Hopkins F, Brown J, Sixsmith J, Sutiwisesak R, Behar SM, Ioerger TR, Fortune SM. Multiplexed Strain Phenotyping Defines Consequences of Genetic Diversity in Mycobacterium tuberculosis for Infection and Vaccination Outcomes. Msystems. e0011022. PMID 35430871 DOI: 10.1128/msystems.00110-22 |
0.202 |
|
| 2016 |
Lanzas F, Ioerger TR, Shah H, Acosta W, Karakousis PC. First evaluation of GenoType MTBDRPlus 2.0 performed directly on respiratory specimens in Central America. Journal of Clinical Microbiology. PMID 27440816 DOI: 10.1128/JCM.01196-16 |
0.201 |
|
| 2017 |
Rehberg N, Akone HS, Ioerger TR, Erlenkamp G, Daletos G, Gohlke H, Proksch P, Kalscheuer R. Chlorflavonin targets acetohydroxyacid synthase catalytic subunit IlvB1 for synergistic killing of Mycobacterium tuberculosis. Acs Infectious Diseases. PMID 29108416 DOI: 10.1021/Acsinfecdis.7B00055 |
0.201 |
|
| 2019 |
Johnson EO, LaVerriere E, Office E, Stanley M, Meyer E, Kawate T, Gomez JE, Audette RE, Bandyopadhyay N, Betancourt N, Delano K, Da Silva I, Davis J, Gallo C, Gardner M, ... ... Ioerger TR, et al. Large-scale chemical-genetics yields new M. tuberculosis inhibitor classes. Nature. PMID 31217586 DOI: 10.1038/S41586-019-1315-Z |
0.201 |
|
| 2015 |
Shell SS, Wang J, Lapierre P, Mir M, Chase MR, Pyle MM, Gawande R, Ahmad R, Sarracino DA, Ioerger TR, Fortune SM, Derbyshire KM, Wade JT, Gray TA. Leaderless Transcripts and Small Proteins Are Common Features of the Mycobacterial Translational Landscape. Plos Genetics. 11: e1005641. PMID 26536359 DOI: 10.1371/Journal.Pgen.1005641 |
0.2 |
|
| 2017 |
Aggarwal A, Parai MK, Shetty N, Wallis D, Woolhiser L, Hastings C, Dutta NK, Galaviz S, Dhakal RC, Shrestha R, Wakabayashi S, Walpole C, Matthews D, Floyd D, Scullion P, ... ... Ioerger TR, et al. Development of a Novel Lead that Targets M. tuberculosis Polyketide Synthase 13. Cell. PMID 28669536 DOI: 10.1016/J.Cell.2017.06.025 |
0.198 |
|
| 2017 |
Yadon AN, Maharaj K, Adamson JH, Lai YP, Sacchettini JC, Ioerger TR, Rubin EJ, Pym AS. A comprehensive characterization of PncA polymorphisms that confer resistance to pyrazinamide. Nature Communications. 8: 588. PMID 28928454 DOI: 10.1038/S41467-017-00721-2 |
0.197 |
|
| 2021 |
Omollo C, Singh V, Kigondu E, Wasuna A, Agarwal P, Moosa A, Ioerger TR, Mizrahi V, Chibale K, Warner DF. Developing synergistic drug combinations to restore antibiotic sensitivity in drug-resistant . Antimicrobial Agents and Chemotherapy. PMID 33619062 DOI: 10.1128/AAC.02554-20 |
0.197 |
|
| 2008 |
Pai R, Sacchettini JC, Ioerger TR. Analysis of protein-ligand interactions using localized stereochemical features Proceedings of the 2008 International Conference On Bioinformatics and Computational Biology, Biocomp 2008. 666-673. |
0.197 |
|
| 2022 |
Koh EI, Oluoch PO, Ruecker N, Proulx MK, Soni V, Murphy KC, Papavinasasundaram K, Reames CJ, Trujillo C, Zaveri A, Zimmerman MD, Aslebagh R, Baker RE, Shaffer SA, Guinn KM, ... ... Ioerger TR, et al. Chemical-genetic interaction mapping links carbon metabolism and cell wall structure to tuberculosis drug efficacy. Proceedings of the National Academy of Sciences of the United States of America. 119: e2201632119. PMID 35380903 DOI: 10.1073/pnas.2201632119 |
0.193 |
|
| 2008 |
Javid-Majd F, Yang D, Ioerger TR, Sacchettini JC. The 1.25 A resolution structure of phosphoribosyl-ATP pyrophosphohydrolase from Mycobacterium tuberculosis. Acta Crystallographica. Section D, Biological Crystallography. 64: 627-35. PMID 18560150 DOI: 10.1107/S0907444908007105 |
0.192 |
|
| 2013 |
Stanley SA, Kawate T, Iwase N, Shimizu M, Clatworthy AE, Kazyanskaya E, Sacchettini JC, Ioerger TR, Siddiqi NA, Minami S, Aquadro JA, Grant SS, Rubin EJ, Hung DT. Diarylcoumarins inhibit mycolic acid biosynthesis and kill Mycobacterium tuberculosis by targeting FadD32. Proceedings of the National Academy of Sciences of the United States of America. 110: 11565-70. PMID 23798446 DOI: 10.1073/Pnas.1302114110 |
0.192 |
|
| 2015 |
Shell SS, Chase MR, Ioerger TR, Fortune SM. RNA sequencing for transcript 5'-end mapping in mycobacteria. Methods in Molecular Biology (Clifton, N.J.). 1285: 31-45. PMID 25779309 DOI: 10.1007/978-1-4939-2450-9_3 |
0.191 |
|
| 2017 |
Perkowski EF, Zulauf KE, Weerakoon D, Hayden JD, Ioerger TR, Oreper D, Gomez SM, Sacchettini JC, Braunstein M. The EXIT Strategy: an Approach for Identifying Bacterial Proteins Exported during Host Infection. Mbio. 8. PMID 28442606 DOI: 10.1128/Mbio.00333-17 |
0.191 |
|
| 2022 |
Babu Sait MR, Koliwer-Brandl H, Stewart JA, Swarts BM, Jacobsen M, Ioerger TR, Kalscheuer R. PPE51 mediates uptake of trehalose across the mycomembrane of Mycobacterium tuberculosis. Scientific Reports. 12: 2097. PMID 35136132 DOI: 10.1038/s41598-022-06109-7 |
0.19 |
|
| 2002 |
Adams PD, Grosse-Kunstleve RW, Hung LW, Ioerger TR, McCoy AJ, Moriarty NW, Read RJ, Sacchettini JC, Sauter NK, Terwilliger TC. PHENIX: building new software for automated crystallographic structure determination. Acta Crystallographica. Section D, Biological Crystallography. 58: 1948-54. PMID 12393927 DOI: 10.1107/S0907444902016657 |
0.19 |
|
| 2022 |
Smith CM, Baker RE, Proulx MK, Mishra BB, Long JE, Park SW, Lee HN, Kiritsy MC, Bellerose MM, Olive AJ, Murphy KC, Papavinasasundaram K, Boehm FJ, Reames CJ, Meade RK, ... ... Ioerger TR, et al. Host-pathogen genetic interactions underlie tuberculosis susceptibility in genetically diverse mice. Elife. 11. PMID 35112666 DOI: 10.7554/eLife.74419 |
0.187 |
|
| 2018 |
Ellenbarger J, Krieger I, Huang HL, Gómez-Coca S, Ioerger TR, Sacchettini JC, Wheeler SE, Dunbar KR. Anion-π Interactions in Computer-Aided Drug Design: Modeling the Inhibition of Malate Synthase by Phenyl-Diketo Acids. Journal of Chemical Information and Modeling. PMID 30137983 DOI: 10.1021/acs.jcim.8b00417 |
0.187 |
|
| 2016 |
Palencia A, Li X, Bu W, Choi W, Ding CZ, Easom EE, Feng L, Hernandez V, Houston P, Liu L, Meewan M, Mohan M, Rock FL, Sexton H, Zhang S, ... ... Ioerger TR, et al. Discovery of novel oral protein synthesis inhibitors of Mycobacterium tuberculosis that target leucyl-tRNA synthetase. Antimicrobial Agents and Chemotherapy. PMID 27503647 DOI: 10.1128/Aac.01339-16 |
0.185 |
|
| 2021 |
Shelton CD, McNeil MB, Early JV, Ioerger TR, Parish T. Deletion of Rv2571c confers resistance to arylamide compounds in . Antimicrobial Agents and Chemotherapy. PMID 33619059 DOI: 10.1128/AAC.02334-20 |
0.185 |
|
| 2009 |
Ioerger TR, Koo S, No EG, Chen X, Larsen MH, Jacobs WR, Pillay M, Sturm AW, Sacchettini JC. Genome analysis of multi- and extensively-drug-resistant tuberculosis from KwaZulu-Natal, South Africa. Plos One. 4: e7778. PMID 19890396 DOI: 10.1371/Journal.Pone.0007778 |
0.184 |
|
| 2020 |
Chengalroyen MD, Jordaan A, Seldon R, Ioerger T, Franzblau SG, Nasr M, Warner DF, Mizrahi V. Biological Profiling Enables Rapid Mechanistic Classification of Phenotypic Screening Hits and Identification of KatG Activation-Dependent Pyridine Carboxamide Prodrugs With Activity Against . Frontiers in Cellular and Infection Microbiology. 10: 582416. PMID 33282750 DOI: 10.3389/fcimb.2020.582416 |
0.183 |
|
| 2015 |
Swanson S, Ioerger TR, Rigel NW, Miller BK, Braunstein M, Sacchettini JC. Structural similarities and differences between two functionally distinct SecA proteins: the Mycobacterium tuberculosis SecA1 and SecA2. Journal of Bacteriology. PMID 26668263 DOI: 10.1128/Jb.00696-15 |
0.181 |
|
| 1993 |
Ioerger TR, Rendell L, Subramaniam S. Constructive induction and protein tertiary structure prediction Proceedings / . International Conference On Intelligent Systems For Molecular Biology ; Ismb. International Conference On Intelligent Systems For Molecular Biology. 1: 198-206. PMID 7584336 |
0.181 |
|
| 2013 |
Ngubane NA, Gresh L, Ioerger TR, Sacchettini JC, Zhang YJ, Rubin EJ, Pym A, Khati M. High-throughput sequencing enhanced phage display identifies peptides that bind mycobacteria. Plos One. 8: e77844. PMID 24265677 DOI: 10.1371/Journal.Pone.0077844 |
0.18 |
|
| 2021 |
Consalvi S, Venditti G, Zhu J, Boshoff HI, Arora K, De Logu A, Ioerger TR, Rubin EJ, Biava M, Poce G. 6-Fluorophenylbenzohydrazides inhibit Mycobacterium tuberculosis growth through alteration of tryptophan biosynthesis. European Journal of Medicinal Chemistry. 226: 113843. PMID 34520959 DOI: 10.1016/j.ejmech.2021.113843 |
0.18 |
|
| 2005 |
Gopal K, Romo T, Mckee E, Childs K, Kanbi L, Pai R, Smith J, Sacchettini J, Ioerger T. TEXTAL™: Automated crystallographic protein structure determination Proceedings of the National Conference On Artificial Intelligence. 3: 1483-1490. |
0.18 |
|
| 2021 |
Libardo MDJ, Duncombe CJ, Green SR, Wyatt PG, Thompson S, Ray PC, Ioerger TR, Oh S, Goodwin MB, Boshoff HIM, Barry CE. Resistance of Mycobacterium tuberculosis to indole 4-carboxamides occurs through alterations in drug metabolism and tryptophan biosynthesis. Cell Chemical Biology. PMID 33765439 DOI: 10.1016/j.chembiol.2021.02.023 |
0.175 |
|
| 2016 |
Warrier T, Kapilashrami K, Argyrou A, Ioerger TR, Little D, Murphy KC, Nandakumar M, Park S, Gold B, Mi J, Zhang T, Meiler E, Rees M, Somersan-Karakaya S, Porras-De Francisco E, et al. N-methylation of a bactericidal compound as a resistance mechanism in Mycobacterium tuberculosis. Proceedings of the National Academy of Sciences of the United States of America. PMID 27432954 DOI: 10.1073/Pnas.1606590113 |
0.175 |
|
| 1995 |
Ioerger TR, Rendell LA, Subramaniam S. Searching for Representations to Improve Protein Sequence Fold-Class Prediction Machine Learning. 21: 151-175. DOI: 10.1007/Bf00993383 |
0.172 |
|
| 2013 |
Lanzas F, Karakousis PC, Sacchettini JC, Ioerger TR. Multidrug-resistant tuberculosis in panama is driven by clonal expansion of a multidrug-resistant Mycobacterium tuberculosis strain related to the KZN extensively drug-resistant M. tuberculosis strain from South Africa. Journal of Clinical Microbiology. 51: 3277-85. PMID 23884993 DOI: 10.1128/Jcm.01122-13 |
0.172 |
|
| 2019 |
Kannan N, Lai YP, Haug M, Lilleness MK, Bakke SS, Marstad A, Hov H, Naustdal T, Afset JE, Ioerger TR, Flo TH, Steigedal M. Genetic variation/evolution and differential host responses resulting from in-patient adaptation of . Infection and Immunity. PMID 30642899 DOI: 10.1128/IAI.00323-18 |
0.171 |
|
| 2008 |
Cho Y, Ioerger TR, Sacchettini JC. Discovery of novel nitrobenzothiazole inhibitors for Mycobacterium tuberculosis ATP phosphoribosyl transferase (HisG) through virtual screening. Journal of Medicinal Chemistry. 51: 5984-92. PMID 18778048 DOI: 10.1021/Jm800328V |
0.171 |
|
| 2018 |
Xia Y, Zhou Y, Carter DS, McNeil MB, Choi W, Halladay J, Berry PW, Mao W, Hernandez V, O'Malley T, Korkegian A, Sunde B, Flint L, Woolhiser LK, Scherman MS, ... ... Ioerger TR, et al. Discovery of a cofactor-independent inhibitor of InhA. Life Science Alliance. 1: e201800025. PMID 30456352 DOI: 10.26508/lsa.201800025 |
0.17 |
|
| 2017 |
Gomez JE, Kaufmann-Malaga BB, Wivagg CN, Kim PB, Silvis MR, Renedo N, Ioerger TR, Ahmad R, Livny J, Fishbein S, Sacchettini JC, Carr SA, Hung DT. Ribosomal mutations promote the evolution of antibiotic resistance in a multidrug environment. Elife. 6. PMID 28220755 DOI: 10.7554/Elife.20420 |
0.17 |
|
| 2012 |
Krieger IV, Freundlich JS, Gawandi VB, Roberts JP, Gawandi VB, Sun Q, Owen JL, Fraile MT, Huss SI, Lavandera JL, Ioerger TR, Sacchettini JC. Structure-guided discovery of phenyl-diketo acids as potent inhibitors of M. tuberculosis malate synthase. Chemistry & Biology. 19: 1556-67. PMID 23261599 DOI: 10.1016/J.Chembiol.2012.09.018 |
0.169 |
|
| 2017 |
Chandrasekara NS, Berube BJ, Shetye G, Chettiar S, O'Malley T, Manning A, Flint L, Awasthi D, Ioerger TR, Sacchettini JC, Masquelin T, Hipskind PA, Odingo J, Parish T. Improved phenoxyalkylbenzimidazoles with activity against Mycobacterium tuberculosis appear to target QcrB. Acs Infectious Diseases. PMID 29035551 DOI: 10.1021/Acsinfecdis.7B00112 |
0.168 |
|
| 2018 |
Baranowski C, Welsh MA, Sham LT, Eskandarian HA, Lim HC, Kieser KJ, Wagner JC, McKinney J, Fantner GE, Ioerger TR, Walker S, Bernhardt TG, Rubin EJ, Rego EH. Maturing peptidoglycan requires non-canonical crosslinks to maintain shape. Elife. 7. PMID 30324906 DOI: 10.7554/Elife.37516 |
0.166 |
|
| 2006 |
Romo TD, Sacchettini JC, Ioerger TR. Improving amino-acid identification, fit and C(alpha) prediction using the Simplex method in automated model building. Acta Crystallographica. Section D, Biological Crystallography. 62: 1401-6. PMID 17057345 DOI: 10.1107/S0907444906034019 |
0.166 |
|
| 2008 |
Zwart PH, Afonine PV, Grosse-Kunstleve RW, Hung LW, Ioerger TR, McCoy AJ, McKee E, Moriarty NW, Read RJ, Sacchettini JC, Sauter NK, Storoni LC, Terwilliger TC, Adams PD. Automated structure solution with the PHENIX suite. Methods in Molecular Biology (Clifton, N.J.). 426: 419-35. PMID 18542881 DOI: 10.1007/978-1-60327-058-8_28 |
0.163 |
|
| 2018 |
Murugesan D, Ray PC, Bayliss T, Prosser GA, Harrison JR, Green K, Soares de Melo C, Feng TS, Street LJ, Chibale K, Warner DF, Mizrahi V, Epemolu O, Scullion P, Ellis L, ... ... Ioerger TR, et al. 2-Mercapto-quinazolinones as inhibitors of NDH-2 and Mycobacterium tuberculosis: Structure-activity relationships, mechanism of action and ADME characterization. Acs Infectious Diseases. PMID 29522317 DOI: 10.1021/Acsinfecdis.7B00275 |
0.163 |
|
| 2017 |
Moosa A, Lamprecht DA, Arora K, Barry CE, Boshoff HIM, Ioerger TR, Steyn AJC, Mizrahi V, Warner DF. Susceptibility of Mycobacterium tuberculosis cytochrome bd oxidase mutants to compounds targeting the terminal respiratory oxidase, cytochrome c. Antimicrobial Agents and Chemotherapy. PMID 28760899 DOI: 10.1128/AAC.01338-17 |
0.158 |
|
| 2005 |
McKee EW, Kanbi LD, Childs KL, Grosse-Kunstleve RW, Adams PD, Sacchettini JC, Ioerger TR. FINDMOL: Automated identification of macromolecules in electron-density maps Acta Crystallographica Section D: Biological Crystallography. 61: 1514-1520. PMID 16239729 DOI: 10.1107/S0907444905027332 |
0.158 |
|
| 1997 |
Ioerger TR. The context-dependence of amino acid properties Proceedings / ... International Conference On Intelligent Systems For Molecular Biology ; Ismb. International Conference On Intelligent Systems For Molecular Biology. 5: 157-166. PMID 9322031 |
0.158 |
|
| 1999 |
Ioerger TR, Holton T, Christopher JA, Sacchettini JC. TEXTAL: a pattern recognition system for interpreting electron density maps Proceedings / ... International Conference On Intelligent Systems For Molecular Biology ; Ismb. International Conference On Intelligent Systems For Molecular Biology. 130-137. PMID 10786295 |
0.157 |
|
| 2003 |
Ioerger TR, Sacchettini JC. TEXTAL system: artificial intelligence techniques for automated protein model building. Methods in Enzymology. 374: 244-70. PMID 14696377 DOI: 10.1016/S0076-6879(03)74012-9 |
0.157 |
|
| 2018 |
Campodónico VL, Rifat D, Chuang YM, Ioerger TR, Karakousis PC. AlteredCell Wall Metabolism and Physiology Associated With RpoB Mutation H526D. Frontiers in Microbiology. 9: 494. PMID 29616007 DOI: 10.3389/fmicb.2018.00494 |
0.156 |
|
| 2021 |
Su H, Lin K, Tiwari D, Healy C, Trujillo C, Liu Y, Ioerger TR, Schnappinger D, Ehrt S. Genetic models of latent tuberculosis in mice reveal differential influence of adaptive immunity. The Journal of Experimental Medicine. 218. PMID 34269789 DOI: 10.1084/jem.20210332 |
0.156 |
|
| 2020 |
Rehberg N, Sommer GA, Drießen D, Kruppa M, Adeniyi ET, Chen S, Wang L, Wolf K, Tasch BOA, Ioerger TR, Zhu K, Müller TJJ, Kalscheuer R. Nature-Inspired (di)Azine-Bridged Bisindole Alkaloids with Potent Antibacterial and Efficacy against Methicillin-Resistant . Journal of Medicinal Chemistry. PMID 33103423 DOI: 10.1021/acs.jmedchem.0c00826 |
0.152 |
|
| 2010 |
Ioerger TR, Feng Y, Chen X, Dobos KM, Victor TC, Streicher EM, Warren RM, Gey van Pittius NC, Van Helden PD, Sacchettini JC. The non-clonality of drug resistance in Beijing-genotype isolates of Mycobacterium tuberculosis from the Western Cape of South Africa. Bmc Genomics. 11: 670. PMID 21110864 DOI: 10.1186/1471-2164-11-670 |
0.151 |
|
| 2023 |
Zhou Y, Sun H, Rapiejko AR, Vargas-Blanco DA, Martini MC, Chase MR, Joubran SR, Davis AB, Dainis JP, Kelly JM, Ioerger TR, Roberts LA, Fortune SM, Shell SS. Mycobacterial RNase E cleaves with a distinct sequence preference and controls the degradation rates of most Mycolicibacterium smegmatis mRNAs. The Journal of Biological Chemistry. 105312. PMID 37802316 DOI: 10.1016/j.jbc.2023.105312 |
0.15 |
|
| 2013 |
Zhang YJ, Reddy MC, Ioerger TR, Rothchild AC, Dartois V, Schuster BM, Trauner A, Wallis D, Galaviz S, Huttenhower C, Sacchettini JC, Behar SM, Rubin EJ. Tryptophan biosynthesis protects mycobacteria from CD4 T-cell-mediated killing. Cell. 155: 1296-308. PMID 24315099 DOI: 10.1016/J.Cell.2013.10.045 |
0.15 |
|
| 2013 |
Gokulan K, O'Leary SE, Russell WK, Russell DH, Lalgondar M, Begley TP, Ioerger TR, Sacchettini JC. Crystal structure of Mycobacterium tuberculosis polyketide synthase 11 (PKS11) reveals intermediates in the synthesis of methyl-branched alkylpyrones. The Journal of Biological Chemistry. 288: 16484-94. PMID 23615910 DOI: 10.1074/Jbc.M113.468892 |
0.149 |
|
| 2020 |
van Geelen L, Kaschani F, Sazzadeh SS, Adeniyi ET, Meier D, Proksch P, Pfeffer K, Kaiser M, Ioerger TR, Kalscheuer R. Natural brominated phenoxyphenols kill persistent and biofilm-incorporated cells of MRSA and other pathogenic bacteria. Applied Microbiology and Biotechnology. PMID 32418125 DOI: 10.1007/S00253-020-10654-4 |
0.148 |
|
| 2019 |
Morbidoni HR, de la Iglesia AI, Figueroa V, Di Capua C, Ioerger TR, Parish T. Mutations in the anti-sigma H factor RshA confer resistance to econazole and clotrimazole in . Access Microbiology. 1: e000070. PMID 32974504 DOI: 10.1099/acmi.0.000070 |
0.147 |
|
| 2023 |
Nelson SJ, Williams JT, Buglino JA, Nambi S, Lojek LJ, Glickman MS, Ioerger TR, Sassetti CM. The Rip1 intramembrane protease contributes to iron and zinc homeostasis in . Msphere. e0038922. PMID 37318217 DOI: 10.1128/msphere.00389-22 |
0.146 |
|
| 2021 |
Oh S, Libardo MDJ, Azeeza S, Pauly GT, Roma JSO, Sajid A, Tateishi Y, Duncombe C, Goodwin M, Ioerger TR, Wyatt PG, Ray PC, Gray DW, Boshoff HIM, Barry CE. Structure-Activity Relationships of Pyrazolo[1,5-]pyrimidin-7(4)-ones as Antitubercular Agents. Acs Infectious Diseases. PMID 33405882 DOI: 10.1021/acsinfecdis.0c00851 |
0.146 |
|
| 2013 |
Liu Z, Ioerger TR, Wang F, Sacchettini JC. Structures of Mycobacterium tuberculosis FadD10 protein reveal a new type of adenylate-forming enzyme. The Journal of Biological Chemistry. 288: 18473-83. PMID 23625916 DOI: 10.1074/Jbc.M113.466912 |
0.146 |
|
| 2013 |
Small JL, Park SW, Kana BD, Ioerger TR, Sacchettini JC, Ehrt S. Perturbation of cytochrome c maturation reveals adaptability of the respiratory chain in Mycobacterium tuberculosis. Mbio. 4: e00475-13. PMID 24045640 DOI: 10.1128/Mbio.00475-13 |
0.144 |
|
| 1991 |
Ioerger TR, Gohlke JR, Xu B, Kao TH. Primary structural features of the self-incompatibility protein in solanaceae Sexual Plant Reproduction. 4: 81-87. DOI: 10.1007/BF00196492 |
0.143 |
|
| 2000 |
Holton T, Ioerger TR, Christopher JA, Sacchettini JC. Determining protein structure from electron-density maps using pattern matching Acta Crystallographica Section D: Biological Crystallography. 56: 722-734. PMID 10818349 DOI: 10.1107/S0907444900003450 |
0.143 |
|
| 2022 |
Singh V, Grzegorzewicz AE, Fienberg S, Müller R, Khonde LP, Sanz O, Alfonso S, Urones B, Drewes G, Bantscheff M, Ghidelli-Disse S, Ioerger TR, Angala B, Liu J, Lee RE, et al. 1,3-Diarylpyrazolyl-acylsulfonamides Target HadAB/BC Complex in . Acs Infectious Diseases. 8: 2315-2326. PMID 36325756 DOI: 10.1021/acsinfecdis.2c00392 |
0.142 |
|
| 2005 |
Ioerger TR. Automated detection of disulfide bridges in electron density maps using linear discriminant analysis Journal of Applied Crystallography. 38: 121-125. DOI: 10.1107/S0021889804030250 |
0.142 |
|
| 2020 |
Zhang L, Hendrickson RC, Meikle V, Lefkowitz EJ, Ioerger TR, Niederweis M. Comprehensive analysis of iron utilization by Mycobacterium tuberculosis. Plos Pathogens. 16: e1008337. PMID 32069330 DOI: 10.1371/Journal.Ppat.1008337 |
0.141 |
|
| 1995 |
Ioerger TR, Rendell LA, Subramaniam S. Searching for representations to improve protein sequence fold-class prediction Machine Learning. 21: 151-175. DOI: 10.1007/BF00993383 |
0.14 |
|
| 2018 |
Steindor M, Nkwouano V, Stefanski A, Stuehler K, Ioerger TR, Bogumil D, Jacobsen M, Mackenzie CR, Kalscheuer R. A proteomics approach for the identification of species-specific immunogenic proteins in the Mycobacterium abscessus complex. Microbes and Infection. PMID 30445130 DOI: 10.1016/j.micinf.2018.10.006 |
0.14 |
|
| 2023 |
Vargas R, Luna MJ, Freschi L, Marin M, Froom R, Murphy KC, Campbell EA, Ioerger TR, Sassetti CM, Farhat MR. Phase variation as a major mechanism of adaptation in complex. Proceedings of the National Academy of Sciences of the United States of America. 120: e2301394120. PMID 37399390 DOI: 10.1073/pnas.2301394120 |
0.139 |
|
| 1990 |
Ioerger TR, Clark AG, Kao TH. Polymorphism at the self-incompatibility locus in Solanaceae predates speciation Proceedings of the National Academy of Sciences of the United States of America. 87: 9732-9735. PMID 2263623 DOI: 10.1073/Pnas.87.24.9732 |
0.139 |
|
| 2020 |
Fishbein SRS, Tomasi FG, Wolf ID, Dulberger CL, Wang A, Keshishian H, Wallace L, Carr SA, Ioerger TR, Rego EH, Rubin EJ. The conserved translation factor LepA is required for optimal synthesis of a porin family in . Journal of Bacteriology. PMID 33361193 DOI: 10.1128/JB.00604-20 |
0.138 |
|
| 2019 |
Ballinger E, Mosior J, Hartman T, Burns-Huang K, Gold B, Morris R, Goullieux L, Blanc I, Vaubourgeix J, Lagrange S, Fraisse L, Sans S, Couturier C, Bacqué E, Rhee K, ... ... Ioerger TR, et al. Opposing reactions in coenzyme A metabolism sensitize to enzyme inhibition. Science (New York, N.Y.). 363. PMID 30705156 DOI: 10.1126/Science.Aau8959 |
0.138 |
|
| 1990 |
Kheyr-Pour A, Bintrim SB, Ioerger TR, Remy R, Hammond SA, Kao T. Sequence diversity of pistil S-proteins associated with gametophytic self-incompatibility in Nicotiana alata Sexual Plant Reproduction. 3: 88-97. DOI: 10.1007/Bf00198851 |
0.138 |
|
| 2019 |
Taechalertpaisarn J, Lyu RL, Arancillo M, Lin CM, Perez LM, Ioerger TR, Burgess K. Correlations between secondary structure- and protein-protein interface-mimicry: the interface mimicry hypothesis. Organic & Biomolecular Chemistry. PMID 30847453 DOI: 10.1039/C9Ob00204A |
0.136 |
|
| 2004 |
Gopal K, Romo TD, Sacchettini JC, Ioerger TR. Evaluation of geometric & probabilistic distance measures to retrieve electron density patterns for protein structure determination Proceedings of the International Conference On Artificial Intelligence, Ic-Ai'04. 1: 427-432. |
0.133 |
|
| 2016 |
Boutte CC, Baer CE, Papavinasasundaram K, Liu W, Chase MR, Meniche X, Fortune SM, Sassetti CM, Ioerger TR, Rubin EJ. A cytoplasmic peptidoglycan amidase homologue controls mycobacterial cell wall synthesis. Elife. 5. PMID 27304077 DOI: 10.7554/Elife.14590 |
0.133 |
|
| 2019 |
Taechalertpaisarn J, Lyu RL, Arancillo M, Lin CM, Jiang Z, Perez LM, Ioerger TR, Burgess K. Design criteria for minimalist mimics of protein-protein interface segments. Organic & Biomolecular Chemistry. PMID 30629068 DOI: 10.1039/C8Ob02901F |
0.129 |
|
| 2018 |
Korkegian A, O'Malley T, Xia Y, Zhou Y, Carter DS, Sunde B, Flint L, Thompson D, Ioerger TR, Sacchettini J, Alley MRK, Parish T. The 7-phenyl benzoxaborole series is active against Mycobacterium tuberculosis. Tuberculosis (Edinburgh, Scotland). 108: 96-98. PMID 29523334 DOI: 10.1016/J.Tube.2017.11.003 |
0.128 |
|
| 1990 |
Ai Y, Singh A, Coleman CE, Ioerger TR, Kheyr-Pour A, Kao Th. Self-incompatibility in Petunia inflata: isolation and characterization of cDNAs encoding three S-allele-associated proteins Sexual Plant Reproduction. 3: 130-138. DOI: 10.1007/Bf00198857 |
0.127 |
|
| 2015 |
Dragset MS, Poce G, Alfonso S, Padilla-Benavides T, Ioerger TR, Kaneko T, Sacchettini JC, Biava M, Parish T, Argüello JM, Steigedal M, Rubin EJ. A novel antimycobacterial compound acts as an intracellular iron chelator. Antimicrobial Agents and Chemotherapy. 59: 2256-64. PMID 25645825 DOI: 10.1128/Aac.05114-14 |
0.125 |
|
| 2008 |
Pai R, Sacchettini JC, Ioerger TR. Specificity normalization for identifying selective inhibitors in virtual screening Proceedings of the 2008 International Conference On Bioinformatics and Computational Biology, Biocomp 2008. 787-793. |
0.123 |
|
| 2017 |
Patel N, O'Malley T, Zhang YK, Xia Y, Sunde B, Flint L, Korkegian A, Ioerger TR, Sacchettini J, Alley MRK, Parish T. A novel 6-benzyl ether benzoxaborole is active against Mycobacterium tuberculosis in vitro. Antimicrobial Agents and Chemotherapy. PMID 28674058 DOI: 10.1128/Aac.01205-17 |
0.123 |
|
| 2001 |
Linthicum DS, Tetin SY, Anchin JM, Ioerger TR. Antibody-ligand interactions: Computational modeling and correlation with biophysical measurements Combinatorial Chemistry and High Throughput Screening. 4: 439-449. PMID 11472232 |
0.122 |
|
| 2017 |
Puckett S, Trujillo C, Wang Z, Eoh H, Ioerger TR, Krieger I, Sacchettini J, Schnappinger D, Rhee KY, Ehrt S. Glyoxylate detoxification is an essential function of malate synthase required for carbon assimilation in Mycobacterium tuberculosis. Proceedings of the National Academy of Sciences of the United States of America. PMID 28265055 DOI: 10.1073/Pnas.1617655114 |
0.121 |
|
| 2002 |
Ioerger TR, Sacchettini JC. Automatic modeling of protein backbones in electron-density maps via prediction of Calpha coordinates. Acta Crystallographica. Section D, Biological Crystallography. 58: 2043-54. PMID 12454463 DOI: 10.1107/S0907444902016724 |
0.12 |
|
| 2019 |
Carey AF, Rock JM, Krieger IV, Chase MR, Fernandez-Suarez M, Gagneux S, Sacchettini JC, Ioerger TR, Fortune SM. Correction: TnSeq of Mycobacterium tuberculosis clinical isolates reveals strain-specific antibiotic liabilities. Plos Pathogens. 15: e1007846. PMID 31163081 DOI: 10.1371/journal.ppat.1007846 |
0.119 |
|
| 2013 |
Ko E, Raghuraman A, Perez LM, Ioerger TR, Burgess K. Exploring key orientations at protein-protein interfaces with small molecule probes. Journal of the American Chemical Society. 135: 167-73. PMID 23270593 DOI: 10.1021/Ja3067258 |
0.118 |
|
| 2002 |
Yu T, Ioerger TR, Sacchettini JC. Extracting fractal features for analyzing protein structure Proceedings - International Conference On Pattern Recognition. 16: 482-485. |
0.118 |
|
| 2013 |
Xin D, Ko E, Perez LM, Ioerger TR, Burgess K. Evaluating minimalist mimics by exploring key orientations on secondary structures (EKOS). Organic & Biomolecular Chemistry. 11: 7789-801. PMID 24121516 DOI: 10.1039/C3Ob41848K |
0.117 |
|
| 2018 |
Ganley J, Carr G, Ioerger T, Sacchettini J, Clardy J, Derbyshire E. Discovery of antimicrobial lipodepsipeptides produced by a Serratia sp. within mosquito microbiomes. Chembiochem : a European Journal of Chemical Biology. PMID 29700993 DOI: 10.1002/Cbic.201800124 |
0.115 |
|
| 2014 |
Xin D, Perez LM, Ioerger TR, Burgess K. A multifaceted secondary structure mimic based on piperidine-piperidinones. Angewandte Chemie (International Ed. in English). 53: 3594-8. PMID 24591004 DOI: 10.1002/Anie.201400927 |
0.11 |
|
| 1999 |
Ioerger TR, Du C, Linthicum DS. Conservation of cys-cys trp structural triads and their geometry in the protein domains of immunoglobulin superfamily members Molecular Immunology. 36: 373-386. PMID 10444001 DOI: 10.1016/S0161-5890(99)00032-2 |
0.11 |
|
| 1994 |
Ioerger TR. The manipulation of images to handle indeterminacy in spatial reasoning Cognitive Science. 18: 551-593. DOI: 10.1016/0364-0213(94)90008-6 |
0.109 |
|
| 2002 |
Rong J, Geng S, Valasek J, Ioerger TR. Air traffic conflict negotiation and resolution using an onboard multi-agent system Aiaa/Ieee Digital Avionics Systems Conference - Proceedings. 2. |
0.108 |
|
| 2004 |
He L, Ioerger TR. Combining bundle search with buyer coalition formation in electronic markets: A distributed approach through explicit negotiation Acm International Conference Proceeding Series. 60: 95-104. DOI: 10.1145/1052220.1052233 |
0.107 |
|
| 2008 |
Reddy MC, Kuppan G, Shetty ND, Owen JL, Ioerger TR, Sacchettini JC. Crystal structures of Mycobacterium tuberculosis S-adenosyl-L-homocysteine hydrolase in ternary complex with substrate and inhibitors. Protein Science : a Publication of the Protein Society. 17: 2134-44. PMID 18815415 DOI: 10.1110/Ps.038125.108 |
0.106 |
|
| 2005 |
Pai R, Sacchettini J, Ioerger T. Identifying NCS in electron density maps: a pattern recognition approach Acta Crystallographica Section a Foundations of Crystallography. 61: c169-c169. DOI: 10.1107/S0108767305092780 |
0.103 |
|
| 2019 |
Rehberg N, Omeje E, Ebada SS, van Geelen L, Liu Z, Sureechatchayan P, Kassack MU, Ioerger TR, Proksch P, Kalscheuer R. 3--Methyl-alkylgallates inhibit fatty acid desaturation in . Antimicrobial Agents and Chemotherapy. PMID 31209015 DOI: 10.1128/Aac.00136-19 |
0.101 |
|
| 2018 |
Singh SB, Odingo J, Bailey MA, Sunde B, Korkegian A, O'Malley T, Ovechkina Y, Ioerger TR, Sacchettini JC, Young K, Olsen DB, Parish T. Identification of cyclic hexapeptides natural products with inhibitory potency against Mycobacterium tuberculosis. Bmc Research Notes. 11: 416. PMID 29954459 DOI: 10.1186/S13104-018-3526-Z |
0.101 |
|
| 2022 |
Shelton CD, McNeil MB, Early JV, Ioerger TR, Parish T. Correction for Shelton et al., "Deletion of Rv2571c Confers Resistance to Arylamide Compounds in Mycobacterium tuberculosis". Antimicrobial Agents and Chemotherapy. e0096222. PMID 35876578 DOI: 10.1128/aac.00962-22 |
0.099 |
|
| 2005 |
Cao S, Volz RA, Ioerger TR, Miller MS. On proactive helping behaviors in teamwork Proceedings of the 2005 International Conference On Artificial Intelligence, Icai'05. 2: 974-980. |
0.099 |
|
| 2021 |
van Geelen L, Kaschani F, Sazzadeh SS, Adeniyi ET, Meier D, Proksch P, Pfeffer K, Kaiser M, Ioerger TR, Kalscheuer R. Correction to: Natural brominated phenoxyphenols kill persistent and biofilm-incorporated cells of MRSA and other pathogenic bacteria. Applied Microbiology and Biotechnology. PMID 34278512 DOI: 10.1007/s00253-021-11409-5 |
0.098 |
|
| 2004 |
He L, Ioerger TR. An efficient heuristic bundle search algorithm for buyers in electronic markets Proceedings of the International Conference On Artificial Intelligence, Ic-Ai'04. 2: 729-735. |
0.098 |
|
| 2020 |
Dutta E, Bothra A, Chaspari T, Ioerger T, Mortazavi BJ. Reinforcement Learning using EEG signals for Therapeutic Use of Music in Emotion Management. Annual International Conference of the Ieee Engineering in Medicine and Biology Society. Ieee Engineering in Medicine and Biology Society. Annual International Conference. 2020: 5553-5556. PMID 33019236 DOI: 10.1109/EMBC44109.2020.9175586 |
0.096 |
|
| 2004 |
Ye S, Vakonakis I, Ioerger TR, LiWang AC, Sacchettini JC. Crystal structure of circadian clock protein KaiA from Synechococcus elongatus. The Journal of Biological Chemistry. 279: 20511-8. PMID 15007067 DOI: 10.1074/Jbc.M400077200 |
0.096 |
|
| 2001 |
Tao Y, Ioerger TR, Tang YY. Extraction of rotation invariant signature based on fractal geometry Ieee International Conference On Image Processing. 1: 1090-1093. |
0.095 |
|
| 2001 |
Yen J, Yin J, Ioerger TR, Miller MS, Xu D, Volz RA. CAST: Collaborative Agents for Simulating Teamwork Ijcai International Joint Conference On Artificial Intelligence. 1135-1142. |
0.095 |
|
| 2000 |
El-Nasr MS, Yen J, Ioerger TR. Autonomous Agents and Multi-Agent Systems. 3: 219-257. DOI: 10.1023/A:1010030809960 |
0.094 |
|
| 2017 |
Perkowski EF, Zulauf KE, Weerakoon D, Hayden JD, Ioerger TR, Oreper D, Gomez SM, Sacchettini JC, Braunstein M. Erratum for Perkowski et al., "The EXIT Strategy: an Approach for Identifying Bacterial Proteins Exported during Host Infection". Mbio. 8. PMID 28634243 DOI: 10.1128/Mbio.00872-17 |
0.094 |
|
| 2003 |
Xu D, Volz RA, Ioerger TR, Yen J. Modeling and analyzing multi-agent behaviors using predicate/transition nets International Journal of Software Engineering and Knowledge Engineering. 13: 103-124. DOI: 10.1142/S0218194003001184 |
0.093 |
|
| 2004 |
Ioerger TR. Reasoning about beliefs, observability, and information exchange in teamwork Proceedings of the Seventeenth International Florida Artificial Intelligence Research Society Conference, Flairs 2004. 1: 430-435. |
0.092 |
|
| 2002 |
Xu D, Volz R, Ioerger T, Yen J. Modeling and verifying multi-agent behaviors using predicate/transition nets Acm International Conference Proceeding Series. 27: 193-200. DOI: 10.1145/568760.568794 |
0.091 |
|
| 2000 |
Seif El-Nasr M, Yen J, Ioerger TR. FLAME - Fuzzy Logic Adaptive Model of Emotions Autonomous Agents and Multi-Agent Systems. 3: 219-257. |
0.09 |
|
| 2004 |
Wollkind S, Valasek J, Ioerger TR. Automated conflict resolution for air traffic management using cooperative multiagent negotiation Collection of Technical Papers - Aiaa Guidance, Navigation, and Control Conference. 2: 1078-1088. |
0.09 |
|
| 2019 |
Morbidoni HR, de la Iglesia AI, Figueroa V, Di Capua C, Ioerger TR, Parish T. Mutations in the anti-sigma H factor RshA confer resistance to econazole and clotrimazole in Mycobacterium smegmatis Access Microbiology. 1. DOI: 10.1099/acmi.0.000070 |
0.089 |
|
| 2016 |
Koliwer-Brandl H, Syson K, van de Weerd R, Chandra G, Appelmelk B, Alber M, Ioerger TR, Jacobs WR, Geurtsen J, Bornemann S, Kalscheuer R. Metabolic Network for the Biosynthesis of Intra- and Extracellular α-Glucans Required for Virulence of Mycobacterium tuberculosis. Plos Pathogens. 12: e1005768. PMID 27513637 DOI: 10.1371/Journal.Ppat.1005768 |
0.085 |
|
| 2001 |
Johnson JC, Ioerger TR. A formal model of responsibilities in agent-based teams Proceedings of the International Conference On Autonomous Agents. 157-158. |
0.081 |
|
| 2004 |
He L, Ioerger TR. Combining bundle search with buyer coalition formation in electronic markets: A distributed approach through negotiation Proceedings of the Third International Joint Conference On Autonomous Agents and Multiagent Systems, Aamas 2004. 3: 1440-1441. |
0.081 |
|
| 2001 |
Biggers KE, Ioerger TR. Automatic generation of communication and teamwork within multi-agent teams Applied Artificial Intelligence. 15: 875-916. DOI: 10.1080/088395101753242679 |
0.08 |
|
| 2007 |
Creel J, Menzel C, Ioerger T. Intention is commitment with expectation Proceedings of the Twentieth International Florida Artificial Intelligence Research Society Conference, Flairs 2007. 50-55. |
0.079 |
|
| 2002 |
Rozich R, Ioerger T, Yager R. FURL - A theory revision approach to learning fuzzy rules Ieee International Conference On Fuzzy Systems. 1: 791-796. |
0.077 |
|
| 2006 |
Fan X, Yen J, Miller M, Ioerger TR, Volz R. MALLET - A Multi-Agent Logic Language for Encoding Teamwork Ieee Transactions On Knowledge and Data Engineering. 18: 123-138. DOI: 10.1109/Tkde.2006.13 |
0.076 |
|
| 2003 |
Xu D, Miller MS, Volz RA, Ioerger TR. Collaborative agents for C2 teamwork simulation Proceedings of the International Conference On Artificial Intelligence Ic-Ai 2003. 2: 723-729. |
0.076 |
|
| 2004 |
He L, Ioerger TR. Task-oriented computational economic-based distributed resource allocation mechanisms for computational grids Proceedings of the International Conference On Artificial Intelligence, Ic-Ai'04. 1: 462-468. |
0.07 |
|
| 2017 |
Haspel N, Ioerger T, Al-Mubaid H. Introduction to selected papers from the 8th International Conference on Bioinformatics and Computational Biology (BICOB 2016). Journal of Bioinformatics and Computational Biology. 1702002. PMID 28571482 DOI: 10.1142/S0219720017020024 |
0.067 |
|
| 2005 |
He L, Ioerger TR. Incentive compatible mechanism design for synthetic task allocation in virtual organizations 2005 International Conference On Integration of Knowledge Intensive Multi-Agent Systems, Kimas'05: Modeling, Exploration, and Engineering. 2005: 205-210. |
0.065 |
|
| 2005 |
Zhang Y, Volz RA, Ioerger TR. Observation-based proactive communication in team cooperation Proceedings of the International Conference On Autonomous Agents. 1397-1398. |
0.064 |
|
| 2004 |
Zhang Y, Volz RA, Ioerger TR, Yen J. A decision-theoretic approach for designing proactive communication in multi-agent teamwork Proceedings of the Acm Symposium On Applied Computing. 1: 64-71. |
0.064 |
|
| 2000 |
Miller MS, Yin J, Volz RA, Ioerger TR, Yen J. Training teams with collaborative agents Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 1839: 63-72. |
0.063 |
|
| 2011 |
Raghuraman A, Ko E, Perez LM, Ioerger TR, Burgess K. Pyrrolinone-pyrrolidine oligomers as universal peptidomimetics. Journal of the American Chemical Society. 133: 12350-3. PMID 21780756 DOI: 10.1021/Ja2033734 |
0.061 |
|
| 2003 |
He L, Ioerger TR. A quantitative model of capabilities in multi-agent systems Proceedings of the International Conference On Artificial Intelligence Ic-Ai 2003. 2: 730-736. |
0.061 |
|
| 2018 |
Ganley JG, Carr G, Ioerger TR, Sacchettini JC, Clardy J, Derbyshire ER. Front Cover: Discovery of Antimicrobial Lipodepsipeptides Produced by a Serratia
sp. within Mosquito Microbiomes (ChemBioChem 15/2018) Chembiochem. 19: 1570-1570. DOI: 10.1002/Cbic.201800362 |
0.05 |
|
| 2001 |
Ioerger TR, Meeks JH, Nelson P. Investigation of density and flow relationships in congested traffic with videogrammetric data Transportation Research Record. 167-177. |
0.048 |
|
| 2005 |
Zhang Y, Ioerger TR, Volz RA. Decision-theoretic proactive communication in multi-agent teamwork Conference Proceedings - Ieee International Conference On Systems, Man and Cybernetics. 4: 3903-3908. |
0.044 |
|
| 2016 |
Haspel N, Ioerger T, Al-Mubaid H. Message from chairs Proceedings of the 8th International Conference On Bioinformatics and Computational Biology, Bicob 2016. iv. |
0.01 |
|
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