Francois Major - Publications

Affiliations: 
Université de Montréal, Montréal, Canada 
Area:
Computer Science

59 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Hardy MP, Audemard É, Migneault F, Feghaly A, Brochu S, Gendron P, Boilard É, Major F, Dieudé M, Hébert MJ, Perreault C. Apoptotic endothelial cells release small extracellular vesicles loaded with immunostimulatory viral-like RNAs. Scientific Reports. 9: 7203. PMID 31076589 DOI: 10.1038/s41598-019-43591-y  0.72
2015 Weill N, Lisi V, Scott N, Dallaire P, Pelloux J, Major F. MiRBooking simulates the stoichiometric mode of action of microRNAs. Nucleic Acids Research. 43: 6730-8. PMID 26089388 DOI: 10.1093/nar/gkv619  1
2015 Wheeler EC, Washburn MC, Major F, Rusch DB, Hundley HA. Noncoding regions of C. elegans mRNA undergo selective adenosine to inosine deamination and contain a small number of editing sites per transcript. Rna Biology. 12: 162-74. PMID 25826568 DOI: 10.1080/15476286.2015.1017220  1
2014 Blanchet MF, St-Onge K, Lisi V, Robitaille J, Hamel S, Major F. Computational identification of RNA functional determinants by three-dimensional quantitative structure-activity relationships. Nucleic Acids Research. 42: 11261-71. PMID 25200082 DOI: 10.1093/nar/gku816  1
2013 Gkogkas CG, Khoutorsky A, Ran I, Rampakakis E, Nevarko T, Weatherill DB, Vasuta C, Yee S, Truitt M, Dallaire P, Major F, Lasko P, Ruggero D, Nader K, Lacaille JC, et al. Autism-related deficits via dysregulated eIF4E-dependent translational control. Nature. 493: 371-7. PMID 23172145 DOI: 10.1038/nature11628  1
2012 Reinharz V, Major F, Waldispühl J. Towards 3D structure prediction of large RNA molecules: an integer programming framework to insert local 3D motifs in RNA secondary structure. Bioinformatics (Oxford, England). 28: i207-14. PMID 22689763 DOI: 10.1093/bioinformatics/bts226  1
2012 Parisien M, Major F. Determining RNA three-dimensional structures using low-resolution data. Journal of Structural Biology. 179: 252-60. PMID 22387042 DOI: 10.1016/j.jsb.2011.12.024  1
2012 Cruz JA, Blanchet MF, Boniecki M, Bujnicki JM, Chen SJ, Cao S, Das R, Ding F, Dokholyan NV, Flores SC, Huang L, Lavender CA, Lisi V, Major F, Mikolajczak K, et al. RNA-Puzzles: a CASP-like evaluation of RNA three-dimensional structure prediction. Rna (New York, N.Y.). 18: 610-25. PMID 22361291 DOI: 10.1261/rna.031054.111  1
2011 Kloc M, Dallaire P, Reunov A, Major F. Structural messenger RNA contains cytokeratin polymerization and depolymerization signals. Cell and Tissue Research. 346: 209-22. PMID 21987223 DOI: 10.1007/s00441-011-1255-x  1
2011 Lerman YV, Kennedy SD, Shankar N, Parisien M, Major F, Turner DH. NMR structure of a 4 x 4 nucleotide RNA internal loop from an R2 retrotransposon: identification of a three purine-purine sheared pair motif and comparison to MC-SYM predictions. Rna (New York, N.Y.). 17: 1664-77. PMID 21778280 DOI: 10.1261/rna.2641911  1
2010 Mullen MA, Olson KJ, Dallaire P, Major F, Assmann SM, Bevilacqua PC. RNA G-Quadruplexes in the model plant species Arabidopsis thaliana: prevalence and possible functional roles. Nucleic Acids Research. 38: 8149-63. PMID 20860998 DOI: 10.1093/nar/gkq804  1
2010 Yang S, Parisien M, Major F, Roux B. RNA structure determination using SAXS data. The Journal of Physical Chemistry. B. 114: 10039-48. PMID 20684627 DOI: 10.1021/jp1057308  1
2010 Cruz-Toledo J, Dumontier M, Parisien M, Major F. RKB: a Semantic Web knowledge base for RNA. Journal of Biomedical Semantics. 1: S2. PMID 20626922 DOI: 10.1186/2041-1480-1-S1-S2  1
2010 De Guire V, Caron M, Scott N, Ménard C, Gaumont-Leclerc MF, Chartrand P, Major F, Ferbeyre G. Designing small multiple-target artificial RNAs. Nucleic Acids Research. 38: e140. PMID 20453028 DOI: 10.1093/nar/gkq354  1
2009 Ensterö M, Daniel C, Wahlstedt H, Major F, Ohman M. Recognition and coupling of A-to-I edited sites are determined by the tertiary structure of the RNA. Nucleic Acids Research. 37: 6916-26. PMID 19740768 DOI: 10.1093/nar/gkp731  1
2009 Parisien M, Cruz JA, Westhof E, Major F. New metrics for comparing and assessing discrepancies between RNA 3D structures and models. Rna (New York, N.Y.). 15: 1875-85. PMID 19710185 DOI: 10.1261/rna.1700409  1
2009 McGraw AP, Mokdad A, Major F, Bevilacqua PC, Babitzke P. Molecular basis of TRAP-5'SL RNA interaction in the Bacillus subtilis trp operon transcription attenuation mechanism. Rna (New York, N.Y.). 15: 55-66. PMID 19033375 DOI: 10.1261/rna.1314409  1
2008 Parisien M, Major F. The MC-Fold and MC-Sym pipeline infers RNA structure from sequence data. Nature. 452: 51-5. PMID 18322526 DOI: 10.1038/nature06684  1
2008 Bouchard P, Lacroix-Labonté J, Desjardins G, Lampron P, Lisi V, Lemieux S, Major F, Legault P. Role of SLV in SLI substrate recognition by the Neurospora VS ribozyme. Rna (New York, N.Y.). 14: 736-48. PMID 18314503 DOI: 10.1261/rna.824308  1
2008 Major F, Thibault P. RNA Tertiary Structure Prediction Bioinformatics-From Genomes to Therapies. 1: 491-539. DOI: 10.1002/9783527619368.ch15  1
2007 Lisi V, Major F. A comparative analysis of the triloops in all high-resolution RNA structures reveals sequence structure relationships. Rna (New York, N.Y.). 13: 1537-45. PMID 17652406 DOI: 10.1261/rna.597507  1
2007 Parisien M, Major F. Ranking the factors that contribute to protein beta-sheet folding. Proteins. 68: 824-9. PMID 17523189 DOI: 10.1002/prot.21475  1
2007 Kim YK, Furic L, Parisien M, Major F, DesGroseillers L, Maquat LE. Staufen1 regulates diverse classes of mammalian transcripts Embo Journal. 26: 2670-2681. PMID 17510634 DOI: 10.1038/sj.emboj.7601712  1
2007 St-Onge K, Thibault P, Hamel S, Major F. Modeling RNA tertiary structure motifs by graph-grammars Nucleic Acids Research. 35: 1726-1736. PMID 17317683 DOI: 10.1093/nar/gkm069  1
2007 Sylvestre Y, De Guire V, Querido E, Mukhopadhyay UK, Bourdeau V, Major F, Ferbeyre G, Chartrand P. An E2F/miR-20a autoregulatory feedback loop. The Journal of Biological Chemistry. 282: 2135-43. PMID 17135249 DOI: 10.1074/jbc.M608939200  1
2006 Lemieux S, Major F. Automated extraction and classification of RNA tertiary structure cyclic motifs. Nucleic Acids Research. 34: 2340-6. PMID 16679452 DOI: 10.1093/nar/gkl120  1
2006 Leontis NB, Altman RB, Berman HM, Brenner SE, Brown JW, Engelke DR, Harvey SC, Holbrook SR, Jossinet F, Lewis SE, Major F, Mathews DH, Richardson JS, Williamson JR, Westhof E. The RNA Ontology Consortium: an open invitation to the RNA community. Rna (New York, N.Y.). 12: 533-41. PMID 16484377 DOI: 10.1261/rna.2343206  1
2006 Caron E, Côté C, Parisien M, Major F, Perreault C. Identification of two distinct intracellular localization signals in STT3-B. Archives of Biochemistry and Biophysics. 445: 108-14. PMID 16297371 DOI: 10.1016/j.abb.2005.10.007  1
2005 Parisien M, Major F. A new catalog of protein beta-sheets. Proteins. 61: 545-58. PMID 16184601 DOI: 10.1002/prot.20677  1
2005 Olivier C, Poirier G, Gendron P, Boisgontier A, Major F, Chartrand P. Identification of a conserved RNA motif essential for She2p recognition and mRNA localization to the yeast bud. Molecular and Cellular Biology. 25: 4752-66. PMID 15899876 DOI: 10.1128/MCB.25.11.4752-4766.2005  1
2004 Drisaldi B, Coomaraswamy J, Mastrangelo P, Strome B, Yang J, Watts JC, Chishti MA, Marvi M, Windl O, Ahrens R, Major F, Sy MS, Kretzschmar H, Fraser PE, Mount HT, et al. Genetic mapping of activity determinants within cellular prion proteins: N-terminal modules in PrPC offset pro-apoptotic activity of the Doppel helix B/B' region. The Journal of Biological Chemistry. 279: 55443-54. PMID 15459186 DOI: 10.1074/jbc.M404794200  1
2004 Pinard R, Lambert D, Pothiawala G, Major F, Burke JM. Modifications and deletions of helices within the hairpin ribozyme-substrate complex: an active ribozyme lacking helix 1. Rna (New York, N.Y.). 10: 395-402. PMID 14970385 DOI: 10.1261/rna.5650904  1
2003 Hoffmann B, Mitchell GT, Gendron P, Major F, Andersen AA, Collins RA, Legault P. NMR structure of the active conformation of the Varkud satellite ribozyme cleavage site. Proceedings of the National Academy of Sciences of the United States of America. 100: 7003-8. PMID 12782785 DOI: 10.1073/pnas.0832440100  1
2003 Major F. Building three-dimensional ribonucleic acid structures Computing in Science and Engineering. 5: 44-53. DOI: 10.1109/MCISE.2003.1225860  1
2002 David L, Amara P, Field MJ, Major F. Parametrization of a force field for metals complexed to biomacromolecules: applications to Fe(II), Cu(II) and Pb(II). Journal of Computer-Aided Molecular Design. 16: 635-51. PMID 12602955 DOI: 10.1023/A:1021962616650  1
2002 Bourassa N, Major F. Implication of the prohead RNA in phage phi29 DNA packaging. Biochimie. 84: 945-51. PMID 12458086 DOI: 10.1016/S0300-9084(02)01444-X  1
2002 Lemieux S, Major F. RNA canonical and non-canonical base pairing types: a recognition method and complete repertoire. Nucleic Acids Research. 30: 4250-63. PMID 12364604  1
2002 Waugh A, Gendron P, Altman R, Brown JW, Case D, Gautheret D, Harvey SC, Leontis N, Westbrook J, Westhof E, Zuker M, Major F. RNAML: a standard syntax for exchanging RNA information. Rna (New York, N.Y.). 8: 707-17. PMID 12088144 DOI: 10.1017/S1355838202028017  1
2001 David L, Lambert D, Gendron P, Major F. Leadzyme. Methods in Enzymology. 341: 518-40. PMID 11582802 DOI: 10.1016/S0076-6879(01)41174-8  1
2001 Major F, Griffey R. Computational methods for RNA structure determination Current Opinion in Structural Biology. 11: 282-286. PMID 11406375 DOI: 10.1016/S0959-440X(00)00203-7  1
2001 Gendron P, Lemieux S, Major F. Quantitative analysis of nucleic acid three-dimensional structures. Journal of Molecular Biology. 308: 919-36. PMID 11352582 DOI: 10.1006/jmbi.2001.4626  1
2001 Barrette I, Poisson G, Gendron P, Major F. Pseudoknots in prion protein mRNAs confirmed by comparative sequence analysis and pattern searching Nucleic Acids Research. 29: 753-758. PMID 11160898  1
1999 Pinard R, Lambert D, Walter NG, Heckman JE, Major F, Burke JM. Structural basis for the guanosine requirement of the hairpin ribozyme. Biochemistry. 38: 16035-9. PMID 10587425 DOI: 10.1021/bi992024s  1
1998 Zhang F, Lemieux S, Wu X, St-Arnaud D, McMurray CT, Major F, Anderson D. Function of hexameric RNA in packaging of bacteriophage phi 29 DNA in vitro. Molecular Cell. 2: 141-7. PMID 9702201  1
1998 Parisien M, Major F, Peitsch M. A protein conformational search space defined by secondary structure contacts Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 425-436. PMID 9697201  1
1998 Lemieux S, Chartrand P, Cedergren R, Major F. Modeling active RNA structures using the intersection of conformational space: application to the lead-activated ribozyme. Rna (New York, N.Y.). 4: 739-49. PMID 9671048 DOI: 10.1017/S1355838298971266  1
1998 Major F, Lemieux S, Ftouhi A. Computer RNA Three-Dimensional Modeling from Low-Resolution Data and Multiple-Sequence Information Acs Symposium Series. 682: 394-404.  1
1998 Zhang F, Lemieux S, Wu X, McMurray CT, Major F, Anderson D. Function of hexameric RNA in packaging of bacteriophage φ29 DNA in vitro Chemtracts. 11: 994-999.  1
1996 John Wilbur W, Major F, Spouge J, Bryant S. The statistics of unique native states for random peptides Biopolymers. 38: 447-459. PMID 8867208  1
1995 Foucrault M, Major F. Symbolic generation and clustering of RNA 3-D motifs Proceedings / . International Conference On Intelligent Systems For Molecular Biology ; Ismb. International Conference On Intelligent Systems For Molecular Biology. 3: 121-126. PMID 7584428  1
1994 Easterwood TR, Major F, Malhotra A, Harvey SC. Orientations of transfer RNA in the ribosomal A and P sites. Nucleic Acids Research. 22: 3779-86. PMID 7937092 DOI: 10.1093/nar/22.18.3779  1
1993 Major F, Gautheret D, Cedergren R. Reproducing the three-dimensional structure of a tRNA molecule from structural constraints Proceedings of the National Academy of Sciences of the United States of America. 90: 9408-9412. PMID 8415714 DOI: 10.1073/pnas.90.20.9408  1
1993 Gautheret D, Major F, Cedergren R. Modeling the Three-dimensional Structure of RNA Using Discrete Nucleotide Conformational Sets Journal of Molecular Biology. 229: 1049-1064. PMID 7680379 DOI: 10.1006/jmbi.1993.1104  1
1991 Major F, Turcotte M, Gautheret D, Lapalme G, Fillion E, Cedergren R. The combination of symbolic and numerical computation for three-dimensional modeling of RNA Science. 253: 1255-1260. PMID 1716375  1
1990 Gautheret D, Major F, Cedergren R. Pattern searching/alignment with RNA primary and secondary structures: An effective descriptor for tRNA Bioinformatics. 6: 325-331. PMID 1701686 DOI: 10.1093/bioinformatics/6.4.325  1
1990 Gautheret D, Major F, Cedergren R. Computer modeling and display of RNA secondary and tertiary structures Methods in Enzymology. 183: 318-330. PMID 1690337  1
1989 Major F, Malenfant J, Stewart NF. Distance between objects represented by octtrees defined in different coordinate systems Computers and Graphics. 13: 497-503. DOI: 10.1016/0097-8493(89)90011-3  1
1988 Cedergren R, Gautheret D, Lapalme G, Major F. A secondary and tertiary structure editor for nucleic acids Bioinformatics. 4: 143-146. PMID 3382988 DOI: 10.1093/bioinformatics/4.1.143  1
1988 Major F, Feldmann R, Lapalme G, Cedergren R. FUS: A system to simulate conformational changes in biological macromolecules Bioinformatics. 4: 445-451. PMID 3208178 DOI: 10.1093/bioinformatics/4.4.445  1
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