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John V. Carlis - Publications

Affiliations: 
University of Minnesota, Twin Cities, Minneapolis, MN 
Area:
Computer Science
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27 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Carlis J, Bruso K. RSQRT: AN HEURISTIC FOR ESTIMATING THE NUMBER OF CLUSTERS TO REPORT. Electronic Commerce Research and Applications. 11: 152-158. PMID 22773923 DOI: 10.1016/J.Elerap.2011.12.006  0.715
2016 Van Riper SK, Higgins L, Carlis JV, Griffin TJ. RIPPER: a framework for MS1 only metabolomics and proteomics label-free relative quantification. Bioinformatics (Oxford, England). PMID 27153682 DOI: 10.1093/Bioinformatics/Btw091  0.757
2014 Van Riper SK, de Jong EP, Higgins L, Carlis JV, Griffin TJ. Improved intensity-based label-free quantification via proximity-based intensity normalization (PIN). Journal of Proteome Research. 13: 1281-92. PMID 24571364 DOI: 10.1021/Pr400866R  0.754
2014 Rhodus N, Bandhakavi S, Van Riper S, Tawfik P, Stone M, Carlis J, Griffin T. OI0252 Proteomics finds increased salivary CD59 and mammaglobulins in recurrent breast cancer Oral Surgery, Oral Medicine, Oral Pathology and Oral Radiology. 117: e345. DOI: 10.1016/J.Oooo.2014.01.065  0.482
2013 Van Riper SK, de Jong EP, Carlis JV, Griffin TJ. Mass spectrometry-based proteomics: basic principles and emerging technologies and directions. Advances in Experimental Medicine and Biology. 990: 1-35. PMID 23378000 DOI: 10.1007/978-94-007-5896-4_1  0.76
2012 Keefe DF, Gupta A, Feldman D, Carlis JV, Krehbiel Keefe S, Griffin TJ. Scaling up multi-touch selection and querying: Interfaces and applications for combining mobile multi-touch input with large-scale visualization displays International Journal of Human Computer Studies. 70: 703-713. DOI: 10.1016/J.Ijhcs.2012.05.004  0.506
2011 de Jong EP, van Riper SK, Koopmeiners JS, Carlis JV, Griffin TJ. Sample collection and handling considerations for peptidomic studies in whole saliva; implications for biomarker discovery. Clinica Chimica Acta; International Journal of Clinical Chemistry. 412: 2284-8. PMID 21889499 DOI: 10.1016/J.Cca.2011.08.023  0.748
2011 Bandhakavi S, Van Riper SK, Tawfik PN, Stone MD, Haddad T, Rhodus NL, Carlis JV, Griffin TJ. Hexapeptide libraries for enhanced protein PTM identification and relative abundance profiling in whole human saliva. Journal of Proteome Research. 10: 1052-61. PMID 21142092 DOI: 10.1021/Pr100857T  0.766
2011 Carlis J, Bruso K. How many clusters to report: a recursive heuristic. Conference Proceedings : ... Annual International Conference of the Ieee Engineering in Medicine and Biology Society. Ieee Engineering in Medicine and Biology Society. Annual Conference. 2010: 1069-72. PMID 21096553 DOI: 10.1109/IEMBS.2010.5627287  0.717
2010 Onsongo G, Stone MD, Van Riper SK, Chilton J, Wu B, Higgins L, Lund TC, Carlis JV, Griffin TJ. LTQ-iQuant: A freely available software pipeline for automated and accurate protein quantification of isobaric tagged peptide data from LTQ instruments. Proteomics. 10: 3533-8. PMID 20821806 DOI: 10.1002/Pmic.201000189  0.733
2010 de Jong EP, Xie H, Onsongo G, Stone MD, Chen XB, Kooren JA, Refsland EW, Griffin RJ, Ondrey FG, Wu B, Le CT, Rhodus NL, Carlis JV, Griffin TJ. Quantitative proteomics reveals myosin and actin as promising saliva biomarkers for distinguishing pre-malignant and malignant oral lesions. Plos One. 5: e11148. PMID 20567502 DOI: 10.1371/Journal.Pone.0011148  0.741
2010 Pardo JV, Lee JT, Kuskowski MA, Munch KR, Carlis JV, Sheikh SA, Surerus C, Lewis SM, McCarten JR, Fink H, McPherson S, Shah HH, Rottunda S, Dysken MW. Fluorodeoxyglucose positron emission tomography of mild cognitive impairment with clinical follow-up at 3 years. Alzheimer's & Dementia : the Journal of the Alzheimer's Association. 6: 326-33. PMID 20447873 DOI: 10.1016/J.Jalz.2009.09.005  0.746
2010 Onsongo G, Xie H, Griffin TJ, Carlis JV. Relational operators for prioritizing candidate biomarkers in high-throughput differential expression data 2010 Acm International Conference On Bioinformatics and Computational Biology, Acm-Bcb 2010. 25-34. DOI: 10.1145/1854776.1854786  0.73
2008 Lee JT, Munch KR, Carlis JV, Pardo JV. Internet image viewer (iiV). Bmc Medical Imaging. 8: 10. PMID 18510765 DOI: 10.1186/1471-2342-8-10  0.752
2008 Xie H, Onsongo G, Popko J, de Jong EP, Cao J, Carlis JV, Griffin RJ, Rhodus NL, Griffin TJ. Proteomics analysis of cells in whole saliva from oral cancer patients via value-added three-dimensional peptide fractionation and tandem mass spectrometry. Molecular & Cellular Proteomics : McP. 7: 486-98. PMID 18045803 DOI: 10.1074/Mcp.M700146-Mcp200  0.767
2008 Munch KR, Carlis JV, Pardo JV, Lee JT. Bringing functional brain image analysis to the clinician: initial assessment of an online interactive diagnostic aide. Computers in Biology and Medicine. 38: 155-64. PMID 18022149 DOI: 10.1016/J.Compbiomed.2007.09.001  0.75
2008 Onsongo G, Xie H, Griffin TJ, Carlis J. Generating GO slim using relational database management systems to support proteomics analysis Proceedings - Ieee Symposium On Computer-Based Medical Systems. 215-217. DOI: 10.1109/CBMS.2008.77  0.731
2007 Griffin TJ, Xie H, Bandhakavi S, Popko J, Mohan A, Carlis JV, Higgins L. iTRAQ reagent-based quantitative proteomic analysis on a linear ion trap mass spectrometer. Journal of Proteome Research. 6: 4200-9. PMID 17902639 DOI: 10.1021/Pr070291B  0.557
2007 Pardo JV, Lee JT, Sheikh SA, Surerus-Johnson C, Shah H, Munch KR, Carlis JV, Lewis SM, Kuskowski MA, Dysken MW. Where the brain grows old: decline in anterior cingulate and medial prefrontal function with normal aging. Neuroimage. 35: 1231-7. PMID 17321756 DOI: 10.1016/J.Neuroimage.2006.12.044  0.746
2006 Pardo JV, Lee JT, Sheikh SA, Surerus-Johnson C, Munch KR, Carlis JV, Lewis SM, Kuskowski MA, Dysken MW. IC-P-120: Decline in cognitive performance and metabolism in a medial brain network during aging in healthy controls Alzheimer's & Dementia. 2: S700-S701. DOI: 10.1016/J.Jalz.2006.05.2326  0.745
2006 Pardo JV, Lee JT, Sheikh SA, Surerus-Johnson C, Munch KR, Carlis JV, Lewis SM, Kuskowski MA, Dysken MW. P2-372: Decline in cognitive performance and metabolism in a medial brain network during aging in healthy controls Alzheimer's & Dementia. 2: S354-S354. DOI: 10.1016/J.Jalz.2006.05.1212  0.747
2005 Xie H, Rhodus NL, Griffin RJ, Carlis JV, Griffin TJ. A catalogue of human saliva proteins identified by free flow electrophoresis-based peptide separation and tandem mass spectrometry. Molecular & Cellular Proteomics : McP. 4: 1826-30. PMID 16103422 DOI: 10.1074/Mcp.D500008-Mcp200  0.574
2005 Munch KR, Carlis JV, Pardo JV, Lee JT. Novel DBMS extensions for functional brain image analysis Proceedings - 18th International Conference On Systems Engineering, Iicseng 2005. 2005: 301-306. DOI: 10.1109/ICSENG.2005.59  0.749
2005 Xie H, Bandhakavi S, Rhodus N, Griffin RJ, Carlis JV, Griffin TJ. A high-throughput information added proteomic strategy using free flow electrophoresis and tandem mass spectrometry Aiche Annual Meeting, Conference Proceedings. 12473-12501.  0.468
2005 Chen JY, Carlis JV, Gao N. A complex biological databases querying method Proceedings of the Acm Symposium On Applied Computing. 1: 110-114.  0.401
2003 Chen JY, Carlis JV. Genomic data modeling Information Systems. 28: 287-310. DOI: 10.1016/S0306-4379(02)00071-6  0.459
2003 Chen JY, Carlis JV. Similar_Join: Extending DBMS with a bio-specific operator Proceedings of the Acm Symposium On Applied Computing. 109-114.  0.376
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