John V. Carlis - Publications

Affiliations: 
University of Minnesota, Twin Cities, Minneapolis, MN 
Area:
Computer Science

23 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any innacuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2016 Van Riper SK, Higgins L, Carlis JV, Griffin TJ. RIPPER: a framework for MS1 only metabolomics and proteomics label-free relative quantification. Bioinformatics (Oxford, England). PMID 27153682 DOI: 10.1093/bioinformatics/btw091  0.92
2014 Smith AJ, Wietgrefe SW, Shang L, Reilly CS, Southern PJ, Perkey KE, Duan L, Kohler H, Müller S, Robinson J, Carlis JV, Li Q, Johnson RP, Haase AT. Live simian immunodeficiency virus vaccine correlate of protection: immune complex-inhibitory Fc receptor interactions that reduce target cell availability. Journal of Immunology (Baltimore, Md. : 1950). 193: 3126-33. PMID 25143442 DOI: 10.4049/jimmunol.1400822  0.92
2014 Van Riper SK, de Jong EP, Higgins L, Carlis JV, Griffin TJ. Improved intensity-based label-free quantification via proximity-based intensity normalization (PIN). Journal of Proteome Research. 13: 1281-92. PMID 24571364 DOI: 10.1021/pr400866r  0.92
2013 Van Riper SK, de Jong EP, Carlis JV, Griffin TJ. Mass spectrometry-based proteomics: basic principles and emerging technologies and directions. Advances in Experimental Medicine and Biology. 990: 1-35. PMID 23378000 DOI: 10.1007/978-94-007-5896-4_1  0.92
2011 de Jong EP, van Riper SK, Koopmeiners JS, Carlis JV, Griffin TJ. Sample collection and handling considerations for peptidomic studies in whole saliva; implications for biomarker discovery. Clinica Chimica Acta; International Journal of Clinical Chemistry. 412: 2284-8. PMID 21889499 DOI: 10.1016/j.cca.2011.08.023  0.92
2011 Bandhakavi S, Van Riper SK, Tawfik PN, Stone MD, Haddad T, Rhodus NL, Carlis JV, Griffin TJ. Hexapeptide libraries for enhanced protein PTM identification and relative abundance profiling in whole human saliva. Journal of Proteome Research. 10: 1052-61. PMID 21142092 DOI: 10.1021/pr100857t  0.92
2010 Onsongo G, Stone MD, Van Riper SK, Chilton J, Wu B, Higgins L, Lund TC, Carlis JV, Griffin TJ. LTQ-iQuant: A freely available software pipeline for automated and accurate protein quantification of isobaric tagged peptide data from LTQ instruments. Proteomics. 10: 3533-8. PMID 20821806 DOI: 10.1002/pmic.201000189  0.92
2010 de Jong EP, Xie H, Onsongo G, Stone MD, Chen XB, Kooren JA, Refsland EW, Griffin RJ, Ondrey FG, Wu B, Le CT, Rhodus NL, Carlis JV, Griffin TJ. Quantitative proteomics reveals myosin and actin as promising saliva biomarkers for distinguishing pre-malignant and malignant oral lesions. Plos One. 5: e11148. PMID 20567502 DOI: 10.1371/journal.pone.0011148  0.92
2010 Pardo JV, Lee JT, Kuskowski MA, Munch KR, Carlis JV, Sheikh SA, Surerus C, Lewis SM, McCarten JR, Fink H, McPherson S, Shah HH, Rottunda S, Dysken MW. Fluorodeoxyglucose positron emission tomography of mild cognitive impairment with clinical follow-up at 3 years. Alzheimer's & Dementia : the Journal of the Alzheimer's Association. 6: 326-33. PMID 20447873 DOI: 10.1016/j.jalz.2009.09.005  0.92
2010 Onsongo G, Xie H, Griffin TJ, Carlis JV. Relational operators for prioritizing candidate biomarkers in high-throughput differential expression data 2010 Acm International Conference On Bioinformatics and Computational Biology, Acm-Bcb 2010. 25-34. DOI: 10.1145/1854776.1854786  0.48
2009 Bosinger SE, Li Q, Gordon SN, Klatt NR, Duan L, Xu L, Francella N, Sidahmed A, Smith AJ, Cramer EM, Zeng M, Masopust D, Carlis JV, Ran L, Vanderford TH, et al. Global genomic analysis reveals rapid control of a robust innate response in SIV-infected sooty mangabeys. The Journal of Clinical Investigation. 119: 3556-72. PMID 19959874 DOI: 10.1172/JCI40115  0.92
2009 Li Q, Skinner PJ, Ha SJ, Duan L, Mattila TL, Hage A, White C, Barber DL, O'Mara L, Southern PJ, Reilly CS, Carlis JV, Miller CJ, Ahmed R, Haase AT. Visualizing antigen-specific and infected cells in situ predicts outcomes in early viral infection. Science (New York, N.Y.). 323: 1726-9. PMID 19325114 DOI: 10.1126/science.1168676  0.92
2008 Lee JT, Munch KR, Carlis JV, Pardo JV. Internet image viewer (iiV). Bmc Medical Imaging. 8: 10. PMID 18510765 DOI: 10.1186/1471-2342-8-10  0.92
2008 Li Q, Estes JD, Duan L, Jessurun J, Pambuccian S, Forster C, Wietgrefe S, Zupancic M, Schacker T, Reilly C, Carlis JV, Haase AT. Simian immunodeficiency virus-induced intestinal cell apoptosis is the underlying mechanism of the regenerative enteropathy of early infection Journal of Infectious Diseases. 197: 420-429. PMID 18199035 DOI: 10.1086/525046  0.92
2008 Xie H, Onsongo G, Popko J, de Jong EP, Cao J, Carlis JV, Griffin RJ, Rhodus NL, Griffin TJ. Proteomics analysis of cells in whole saliva from oral cancer patients via value-added three-dimensional peptide fractionation and tandem mass spectrometry. Molecular & Cellular Proteomics : McP. 7: 486-98. PMID 18045803 DOI: 10.1074/mcp.M700146-MCP200  0.92
2008 Munch KR, Carlis JV, Pardo JV, Lee JT. Bringing functional brain image analysis to the clinician: initial assessment of an online interactive diagnostic aide. Computers in Biology and Medicine. 38: 155-64. PMID 18022149 DOI: 10.1016/j.compbiomed.2007.09.001  0.92
2007 Griffin TJ, Xie H, Bandhakavi S, Popko J, Mohan A, Carlis JV, Higgins L. iTRAQ reagent-based quantitative proteomic analysis on a linear ion trap mass spectrometer. Journal of Proteome Research. 6: 4200-9. PMID 17902639 DOI: 10.1021/pr070291b  0.92
2007 Pardo JV, Lee JT, Sheikh SA, Surerus-Johnson C, Shah H, Munch KR, Carlis JV, Lewis SM, Kuskowski MA, Dysken MW. Where the brain grows old: decline in anterior cingulate and medial prefrontal function with normal aging. Neuroimage. 35: 1231-7. PMID 17321756 DOI: 10.1016/j.neuroimage.2006.12.044  0.92
2005 Xie H, Rhodus NL, Griffin RJ, Carlis JV, Griffin TJ. A catalogue of human saliva proteins identified by free flow electrophoresis-based peptide separation and tandem mass spectrometry. Molecular & Cellular Proteomics : McP. 4: 1826-30. PMID 16103422 DOI: 10.1074/mcp.D500008-MCP200  0.92
2005 Chen JY, Carlis JV, Gao N. A complex biological databases querying method Proceedings of the Acm Symposium On Applied Computing. 1: 110-114.  0.36
2003 Chen JY, Carlis JV. Genomic data modeling Information Systems. 28: 287-310. DOI: 10.1016/S0306-4379(02)00071-6  0.76
2003 Chen JY, Carlis JV. Similar_Join: Extending DBMS with a bio-specific operator Proceedings of the Acm Symposium On Applied Computing. 109-114.  0.84
2003 Wagner PJ, Shoop E, Carlis JV. Using scientific data to teach a database systems course Sigcse Bulletin (Association For Computing Machinery, Special Interest Group On Computer Science Education). 224-228.  0.64
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