Mingzhou Song, Ph.D. - Publications

2002 University of Washington, Seattle, Seattle, WA 
Electronics and Electrical Engineering, Computer Science, Biomedical Engineering

22 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2016 Wang H, Leung M, Wandinger-Ness A, Hudson LG, Song M. Constrained inference of protein interaction networks for invadopodium formation in cancer. Iet Systems Biology. 10: 76-85. PMID 26997662 DOI: 10.1049/Iet-Syb.2015.0009  0.92
2016 Hill SM, Heiser LM, Cokelaer T, Unger M, Nesser NK, Carlin DE, Zhang Y, Sokolov A, Paull EO, Wong CK, Graim K, Bivol A, Wang H, Zhu F, Afsari B, ... ... Song M, et al. Inferring causal molecular networks: empirical assessment through a community-based effort. Nature Methods. PMID 26901648 DOI: 10.1038/Nmeth.3773  0.92
2015 Zhang J, Yu J, Pei W, Li X, Said J, Song M, Sanogo S. Genetic analysis of Verticillium wilt resistance in a backcross inbred line population and a meta-analysis of quantitative trait loci for disease resistance in cotton. Bmc Genomics. 16: 577. PMID 26239843 DOI: 10.1186/S12864-015-1682-2  0.92
2015 Cotton TB, Nguyen HH, Said JI, Ouyang Z, Zhang J, Song M. Discerning mechanistically rewired biological pathways by cumulative interaction heterogeneity statistics. Scientific Reports. 5: 9634. PMID 25921728 DOI: 10.1038/Srep09634  1
2015 Ha T, Swanson D, Larouche M, Glenn R, Weeden D, Zhang P, Hamre K, Langston M, Phillips C, Song M, Ouyang Z, Chesler E, Duvvurru S, Yordanova R, Cui Y, et al. CbGRiTS: cerebellar gene regulation in time and space. Developmental Biology. 397: 18-30. PMID 25446528 DOI: 10.1016/J.Ydbio.2014.09.032  1
2014 Song M, Zhang Y, Katzaroff AJ, Edgar BA, Buttitta L. Hunting complex differential gene interaction patterns across molecular contexts. Nucleic Acids Research. 42: e57. PMID 24482443 DOI: 10.1093/Nar/Gku086  1
2012 Cruz-Martínez K, Rosling A, Zhang Y, Song M, Andersen GL, Banfield JF. Effect of rainfall-induced soil geochemistry dynamics on grassland soil microbial communities. Applied and Environmental Microbiology. 78: 7587-95. PMID 22904056 DOI: 10.1128/Aem.00203-12  1
2011 Ouyang Z, Song M, Güth R, Ha TJ, Larouche M, Goldowitz D. Conserved and differential gene interactions in dynamical biological systems. Bioinformatics (Oxford, England). 27: 2851-8. PMID 21840874 DOI: 10.1093/Bioinformatics/Btr472  1
2010 Song M, Haralick RM, Boissinot S. Efficient and exact maximum likelihood quantisation of genomic features using dynamic programming. International Journal of Data Mining and Bioinformatics. 4: 123-41. PMID 20423016 DOI: 10.1504/IJDMB.2010.032167  1
2009 Angeles JG, Ouyang Z, Aguirre AM, Lammers PJ, Song M. Identification of gene interactions in fungal-plant symbiosis through discrete dynamical system modelling. Iet Systems Biology. 3: 414-28. PMID 21028931 DOI: 10.1049/Iet-Syb.2008.0164  1
2009 Song M, Ouyang Z, Liu ZL. Discrete dynamical system modelling for gene regulatory networks of 5-hydroxymethylfurfural tolerance for ethanologenic yeast Iet Systems Biology. 3: 203-218. PMID 19449980 DOI: 10.1049/Iet-Syb.2008.0089  1
2009 Song MJ, Lewis CK, Lance ER, Chesler EJ, Yordanova RK, Langston MA, Lodowski KH, Bergeson SE. Reconstructing generalized logical networks of transcriptional regulation in mouse brain from temporal gene expression data. Eurasip Journal On Bioinformatics & Systems Biology. 545176. PMID 19300527 DOI: 10.1155/2009/545176  1
2009 Ouyang Z, Song M. Statistical analysis of discrete dynamical system models for biological networks Proceedings - 2009 International Joint Conference On Bioinformatics, Systems Biology and Intelligent Computing, Ijcbs 2009. 472-478. DOI: 10.1109/IJCBS.2009.10  1
2007 Song M, Boissinot S. Selection against LINE-1 retrotransposons results principally from their ability to mediate ectopic recombination. Gene. 390: 206-13. PMID 17134851 DOI: 10.1016/J.Gene.2006.09.033  1
2007 Song M, Haralick RM, Boissinot S. Maximum likelihood quantization of genomic features using dynamic programming Proceedings - 6th International Conference On Machine Learning and Applications, Icmla 2007. 547-553. DOI: 10.1109/ICMLA.2007.72  1
2005 Song M, Haralick RM. Non-parametric pixel appearance probability model using grid quantization for local image information representation Medical Imaging Systems Technology: Volume 2: Modalities. 297-330. DOI: 10.1142/9789812701077_0010  0.92
2003 Song M, Boissinot S, Haralick RM, Phillips IT. Estimating recombination rate distribution by optimal quantization Proceedings of the 2003 Ieee Bioinformatics Conference, Csb 2003. 403-406. DOI: 10.1109/CSB.2003.1227346  1
2002 Song M, Haralick RM, Sheehan FH, Johnson RK. Integrated surface model optimization for freehand three-dimensional echocardiography. Ieee Transactions On Medical Imaging. 21: 1077-90. PMID 12564876 DOI: 10.1109/Tmi.2002.804433  1
2002 Song M, Haralick RM. Optimal multidimensional quantization for pattern recognition Proceedings of Spie - the International Society For Optical Engineering. 4875: 15-30. DOI: 10.1117/12.477142  1
2002 Song M, Haralick RM, Sheehan FH, Johnson RK. An integrated approach to surface modeling in freehand three-dimensional echocardiography Annual International Conference of the Ieee Engineering in Medicine and Biology - Proceedings. 2: 1082-1083.  1
2002 Mingzhou S, Haralick RM. Optimal grid quantization Proceedings - International Conference On Pattern Recognition. 16: 444-447.  0.76
2000 Song M, Haralick RM, Sheehan FH. Ultrasound imaging simulation and echocardiographic image synthesis Ieee International Conference On Image Processing. 3.  1
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