Li-San Wang, Ph.D. - Publications

Affiliations: 
2003 University of Texas at Austin, Austin, Texas, U.S.A. 
 2003- Pathology and Laboratory Medicine University of Pennsylvania, Philadelphia, PA, United States 
Area:
bioinformatics
Website:
http://tesla.pcbi.upenn.edu/~lswang/

77 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any innacuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Leung YY, Valladares O, Chou YF, Lin HJ, Kuzma AB, Cantwell L, Qu L, Gangadharan P, Salerno WJ, Schellenberg GD, Wang LS. VCPA: genomic variant calling pipeline and data management tool for Alzheimer's Disease Sequencing Project. Bioinformatics (Oxford, England). PMID 31004159 DOI: 10.1093/bioinformatics/btz216  1
2018 Kuksa PP, Amlie-Wolf A, Katanic Ž, Valladares O, Wang LS, Leung YY. DASHR 2.0: integrated database of human small non-coding RNA genes and mature products. Bioinformatics (Oxford, England). PMID 30668832 DOI: 10.1093/bioinformatics/bty709  1
2018 Leung YY, Valladares O, Chou YF, Lin HJ, Kuzma AB, Cantwell L, Qu L, Gangadharan P, Salerno WJ, Schellenberg GD, Wang LS. VCPA: genomic Variant Calling pipeline and data management tool for Alzheimer's Disease Sequencing Project. Bioinformatics (Oxford, England). PMID 30351394 DOI: 10.1093/bioinformatics/bty894  1
2018 Amlie-Wolf A, Tang M, Mlynarski EE, Kuksa PP, Valladares O, Katanic Z, Tsuang D, Brown CD, Schellenberg GD, Wang LS. INFERNO: inferring the molecular mechanisms of noncoding genetic variants. Nucleic Acids Research. PMID 30113658 DOI: 10.1093/nar/gky686  1
2018 Kuksa PP, Amlie-Wolf A, Katanic Ž, Valladares O, Wang LS, Leung YY. SPAR: small RNA-seq portal for analysis of sequencing experiments. Nucleic Acids Research. PMID 29733404 DOI: 10.1093/nar/gky330  1
2018 Nativio R, Donahue G, Berson A, Lan Y, Amlie-Wolf A, Tuzer F, Toledo JB, Gosai SJ, Gregory BD, Torres C, Trojanowski JQ, Wang LS, Johnson FB, Bonini NM, Berger SL. Publisher Correction: Dysregulation of the epigenetic landscape of normal aging in Alzheimer's disease. Nature Neuroscience. PMID 29556027 DOI: 10.1038/s41593-018-0124-2  1
2018 Nativio R, Donahue G, Berson A, Lan Y, Amlie-Wolf A, Tuzer F, Toledo JB, Gosai SJ, Gregory BD, Torres C, Trojanowski JQ, Wang LS, Johnson FB, Bonini NM, Berger SL. Dysregulation of the epigenetic landscape of normal aging in Alzheimer's disease. Nature Neuroscience. PMID 29507413 DOI: 10.1038/s41593-018-0101-9  1
2017 Hafez D, Karabacak A, Krueger S, Hwang YC, Wang LS, Zinzen RP, Ohler U. McEnhancer: predicting gene expression via semi-supervised assignment of enhancers to target genes. Genome Biology. 18: 199. PMID 29070071 DOI: 10.1186/s13059-017-1316-x  1
2017 Kuksa PP, Leung YY, Vandivier LE, Anderson Z, Gregory BD, Wang LS. In Silico Identification of RNA Modifications from High-Throughput Sequencing Data Using HAMR. Methods in Molecular Biology (Clifton, N.J.). 1562: 211-229. PMID 28349463 DOI: 10.1007/978-1-4939-6807-7_14  1
2016 Crowe EP, Tuzer F, Gregory BD, Donahue G, Gosai SJ, Cohen J, Leung YY, Yetkin E, Nativio R, Wang LS, Sell C, Bonini NM, Berger SL, Johnson FB, Torres C. Changes in the Transcriptome of Human Astrocytes Accompanying Oxidative Stress-Induced Senescence. Frontiers in Aging Neuroscience. 8: 208. PMID 27630559 DOI: 10.3389/fnagi.2016.00208  1
2016 Berkowitz ND, Silverman IM, Childress DM, Kazan H, Wang LS, Gregory BD. A comprehensive database of high-throughput sequencing-based RNA secondary structure probing data (Structure Surfer). Bmc Bioinformatics. 17: 215. PMID 27188311 DOI: 10.1186/s12859-016-1071-0  1
2015 Leung YY, Toledo JB, Nefedov A, Polikar R, Raghavan N, Xie SX, Farnum M, Schultz T, Baek Y, Deerlin VV, Hu WT, Holtzman DM, Fagan AM, Perrin RJ, Grossman M, ... ... Wang LS, et al. Identifying amyloid pathology-related cerebrospinal fluid biomarkers for Alzheimer's disease in a multicohort study. Alzheimer's & Dementia (Amsterdam, Netherlands). 1: 339-348. PMID 26693175 DOI: 10.1016/j.dadm.2015.06.008  1
2015 Vandivier LE, Campos R, Kuksa PP, Silverman IM, Wang LS, Gregory BD. Chemical Modifications Mark Alternatively Spliced and Uncapped Messenger RNAs in Arabidopsis. The Plant Cell. PMID 26561561 DOI: 10.1105/tpc.15.00591  1
2015 Leung YY, Kuksa PP, Amlie-Wolf A, Valladares O, Ungar LH, Kannan S, Gregory BD, Wang LS. DASHR: database of small human noncoding RNAs. Nucleic Acids Research. PMID 26553799 DOI: 10.1093/nar/gkv1188  1
2015 Amlie-Wolf A, Ryvkin P, Tong R, Dragomir I, Suh E, Xu Y, Van Deerlin VM, Gregory BD, Kwong LK, Trojanowski JQ, Lee VM, Wang LS, Lee EB. Transcriptomic Changes Due to Cytoplasmic TDP-43 Expression Reveal Dysregulation of Histone Transcripts and Nuclear Chromatin. Plos One. 10: e0141836. PMID 26510133 DOI: 10.1371/journal.pone.0141836  1
2015 Ghani M, Reitz C, Cheng R, Vardarajan BN, Jun G, Sato C, Naj A, Rajbhandary R, Wang LS, Valladares O, Lin CF, Larson EB, Graff-Radford NR, Evans D, De Jager PL, et al. Association of Long Runs of Homozygosity With Alzheimer Disease Among African American Individuals. Jama Neurology. PMID 26366463 DOI: 10.1001/jamaneurol.2015.1700  1
2015 Hohman TJ, Cooke-Bailey JN, Reitz C, Jun G, Naj A, Beecham GW, Liu Z, Carney RM, Vance JM, Cuccaro ML, Rajbhandary R, Vardarajan BN, Wang LS, Valladares O, Lin CF, et al. Global and local ancestry in African-Americans: Implications for Alzheimer's disease risk. Alzheimer's & Dementia : the Journal of the Alzheimer's Association. PMID 26092349 DOI: 10.1016/j.jalz.2015.02.012  1
2015 Kouri N, Ross OA, Dombroski B, Younkin CS, Serie DJ, Soto-Ortolaza A, Baker M, Finch NC, Yoon H, Kim J, Fujioka S, McLean CA, Ghetti B, Spina S, Cantwell LB, ... ... Wang LS, et al. Genome-wide association study of corticobasal degeneration identifies risk variants shared with progressive supranuclear palsy. Nature Communications. 6: 7247. PMID 26077951 DOI: 10.1038/ncomms8247  1
2015 Caulin AF, Graham TA, Wang LS, Maley CC. Solutions to Peto's paradox revealed by mathematical modelling and cross-species cancer gene analysis. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 370. PMID 26056366 DOI: 10.1098/rstb.2014.0222  1
2015 Lill CM, Rengmark A, Pihlstrøm L, Fogh I, Shatunov A, Sleiman PM, Wang LS, Liu T, Lassen CF, Meissner E, Alexopoulos P, Calvo A, Chio A, Dizdar N, Faltraco F, et al. The role of TREM2 R47H as a risk factor for Alzheimer's disease, frontotemporal lobar degeneration, amyotrophic lateral sclerosis, and Parkinson's disease. Alzheimer's & Dementia : the Journal of the Alzheimer's Association. PMID 25936935 DOI: 10.1016/j.jalz.2014.12.009  1
2015 Mirarab S, Nguyen N, Guo S, Wang LS, Kim J, Warnow T. PASTA: Ultra-Large Multiple Sequence Alignment for Nucleotide and Amino-Acid Sequences. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 22: 377-86. PMID 25549288 DOI: 10.1089/cmb.2014.0156  1
2015 Wang LS, Naj AC, Graham RR, Crane PK, Kunkle BW, Cruchaga C, Murcia JD, Cannon-Albright L, Baldwin CT, Zetterberg H, Blennow K, Kukull WA, Faber KM, Schupf N, Norton MC, et al. Rarity of the Alzheimer disease-protective APP A673T variant in the United States. Jama Neurology. 72: 209-16. PMID 25531812 DOI: 10.1001/jamaneurol.2014.2157  1
2015 Hwang YC, Lin CF, Valladares O, Malamon J, Kuksa PP, Zheng Q, Gregory BD, Wang LS. HIPPIE: a high-throughput identification pipeline for promoter interacting enhancer elements. Bioinformatics (Oxford, England). 31: 1290-2. PMID 25480377 DOI: 10.1093/bioinformatics/btu801  1
2015 Nelson PT, Wang WX, Partch AB, Monsell SE, Valladares O, Ellingson SR, Wilfred BR, Naj AC, Wang LS, Kukull WA, Fardo DW. Reassessment of risk genotypes (GRN, TMEM106B, and ABCC9 variants) associated with hippocampal sclerosis of aging pathology. Journal of Neuropathology and Experimental Neurology. 74: 75-84. PMID 25470345 DOI: 10.1097/NEN.0000000000000151  1
2014 Naj AC, Jun G, Reitz C, Kunkle BW, Perry W, Park YS, Beecham GW, Rajbhandary RA, Hamilton-Nelson KL, Wang LS, Kauwe JS, Huentelman MJ, Myers AJ, Bird TD, Boeve BF, et al. Effects of multiple genetic loci on age at onset in late-onset Alzheimer disease: a genome-wide association study. Jama Neurology. 71: 1394-404. PMID 25199842 DOI: 10.1001/jamaneurol.2014.1491  1
2014 Escott-Price V, Bellenguez C, Wang LS, Choi SH, Harold D, Jones L, Holmans P, Gerrish A, Vedernikov A, Richards A, DeStefano AL, Lambert JC, Ibrahim-Verbaas CA, Naj AC, Sims R, et al. Gene-wide analysis detects two new susceptibility genes for Alzheimer's disease. Plos One. 9: e94661. PMID 24922517 DOI: 10.1371/journal.pone.0094661  1
2014 Nelson PT, Estus S, Abner EL, Parikh I, Malik M, Neltner JH, Ighodaro E, Wang WX, Wilfred BR, Wang LS, Kukull WA, Nandakumar K, Farman ML, Poon WW, Corrada MM, et al. ABCC9 gene polymorphism is associated with hippocampal sclerosis of aging pathology. Acta Neuropathologica. 127: 825-43. PMID 24770881 DOI: 10.1007/s00401-014-1282-2  1
2014 Ryvkin P, Leung YY, Ungar LH, Gregory BD, Wang LS. Using machine learning and high-throughput RNA sequencing to classify the precursors of small non-coding RNAs. Methods (San Diego, Calif.). 67: 28-35. PMID 24145223 DOI: 10.1016/j.ymeth.2013.10.002  1
2013 Lin CF, Naj AC, Wang LS. Analyzing copy number variation using SNP array data: protocols for calling CNV and association tests. Current Protocols in Human Genetics / Editorial Board, Jonathan L. Haines ... [Et Al.]. 79: Unit 1.27.. PMID 24510649 DOI: 10.1002/0471142905.hg0127s79  1
2013 Ryvkin P, Leung YY, Silverman IM, Childress M, Valladares O, Dragomir I, Gregory BD, Wang LS. HAMR: high-throughput annotation of modified ribonucleotides. Rna (New York, N.Y.). 19: 1684-92. PMID 24149843 DOI: 10.1261/rna.036806.112  1
2013 Cao K, Ryvkin P, Hwang YC, Johnson FB, Wang LS. Analysis of nonlinear gene expression progression reveals extensive pathway and age-specific transitions in aging human brains. Plos One. 8: e74578. PMID 24098339 DOI: 10.1371/journal.pone.0074578  1
2013 Lin CF, Valladares O, Childress DM, Klevak E, Geller ET, Hwang YC, Tsai EA, Schellenberg GD, Wang LS. DRAW+SneakPeek: analysis workflow and quality metric management for DNA-seq experiments. Bioinformatics (Oxford, England). 29: 2498-500. PMID 23943636 DOI: 10.1093/bioinformatics/btt422  1
2013 Arnold SE, Toledo JB, Appleby DH, Xie SX, Wang LS, Baek Y, Wolk DA, Lee EB, Miller BL, Lee VM, Trojanowski JQ. Comparative survey of the topographical distribution of signature molecular lesions in major neurodegenerative diseases. The Journal of Comparative Neurology. 521: 4339-55. PMID 23881776 DOI: 10.1002/cne.23430  1
2013 Platt JM, Ryvkin P, Wanat JJ, Donahue G, Ricketts MD, Barrett SP, Waters HJ, Song S, Chavez A, Abdallah KO, Master SR, Wang LS, Johnson FB. Rap1 relocalization contributes to the chromatin-mediated gene expression profile and pace of cell senescence. Genes & Development. 27: 1406-20. PMID 23756653 DOI: 10.1101/gad.218776.113  1
2013 Leung YY, Ryvkin P, Ungar LH, Gregory BD, Wang LS. CoRAL: predicting non-coding RNAs from small RNA-sequencing data. Nucleic Acids Research. 41: e137. PMID 23700308 DOI: 10.1093/nar/gkt426  1
2013 Reitz C, Jun G, Naj A, Rajbhandary R, Vardarajan BN, Wang LS, Valladares O, Lin CF, Larson EB, Graff-Radford NR, Evans D, De Jager PL, Crane PK, Buxbaum JD, Murrell JR, et al. Variants in the ATP-binding cassette transporter (ABCA7), apolipoprotein E ϵ4,and the risk of late-onset Alzheimer disease in African Americans. Jama. 309: 1483-92. PMID 23571587 DOI: 10.1001/jama.2013.2973  1
2013 Miyashita A, Koike A, Jun G, Wang LS, Takahashi S, Matsubara E, Kawarabayashi T, Shoji M, Tomita N, Arai H, Asada T, Harigaya Y, Ikeda M, Amari M, Hanyu H, et al. SORL1 is genetically associated with late-onset Alzheimer's disease in Japanese, Koreans and Caucasians. Plos One. 8: e58618. PMID 23565137 DOI: 10.1371/journal.pone.0058618  1
2013 Hwang YC, Zheng Q, Gregory BD, Wang LS. High-throughput identification of long-range regulatory elements and their target promoters in the human genome. Nucleic Acids Research. 41: 4835-46. PMID 23525463 DOI: 10.1093/nar/gkt188  1
2013 Urtishak KA, Edwards AY, Wang LS, Hudome A, Robinson BW, Barrett JS, Cao K, Cory L, Moore JS, Bantly AD, Yu QC, Chen IM, Atlas SR, Willman CL, Kundu M, et al. Potent obatoclax cytotoxicity and activation of triple death mode killing across infant acute lymphoblastic leukemia. Blood. 121: 2689-703. PMID 23393050 DOI: 10.1182/blood-2012-04-425033  1
2013 Lim ET, Raychaudhuri S, Sanders SJ, Stevens C, Sabo A, MacArthur DG, Neale BM, Kirby A, Ruderfer DM, Fromer M, Lek M, Liu L, Flannick J, Ripke S, Nagaswamy U, ... ... Wang LS, et al. Rare complete knockouts in humans: population distribution and significant role in autism spectrum disorders. Neuron. 77: 235-42. PMID 23352160 DOI: 10.1016/j.neuron.2012.12.029  1
2013 Arnold SE, Vega IE, Karlawish JH, Wolk DA, Nunez J, Negron M, Xie SX, Wang LS, Dubroff JG, McCarty-Wood E, Trojanowski JQ, Van Deerlin V. Frequency and clinicopathological characteristics of presenilin 1 Gly206Ala mutation in Puerto Rican Hispanics with dementia. Journal of Alzheimer's Disease : Jad. 33: 1089-95. PMID 23114514 DOI: 10.3233/JAD-2012-121570  1
2013 Arnold SE, Louneva N, Cao K, Wang LS, Han LY, Wolk DA, Negash S, Leurgans SE, Schneider JA, Buchman AS, Wilson RS, Bennett DA. Cellular, synaptic, and biochemical features of resilient cognition in Alzheimer's disease. Neurobiology of Aging. 34: 157-68. PMID 22554416 DOI: 10.1016/j.neurobiolaging.2012.03.004  1
2012 Turner PE, McBride RC, Duffy S, Montville R, Wang LS, Yang YW, Lee SJ, Kim J. Evolutionary genomics of host-use in bifurcating demes of RNA virus phi-6. Bmc Evolutionary Biology. 12: 153. PMID 22913547 DOI: 10.1186/1471-2148-12-153  1
2012 Li F, Zheng Q, Ryvkin P, Dragomir I, Desai Y, Aiyer S, Valladares O, Yang J, Bambina S, Sabin LR, Murray JI, Lamitina T, Raj A, Cherry S, Wang LS, et al. Global analysis of RNA secondary structure in two metazoans. Cell Reports. 1: 69-82. PMID 22832108 DOI: 10.1016/j.celrep.2011.10.002  1
2012 Nelesen S, Liu K, Wang LS, Linder CR, Warnow T. DACTAL: divide-and-conquer trees (almost) without alignments. Bioinformatics (Oxford, England). 28: i274-82. PMID 22689772 DOI: 10.1093/bioinformatics/bts218  1
2012 Wang LS, Leung YY, Chang SK, Leight S, Knapik-Czajka M, Baek Y, Shaw LM, Lee VM, Trojanowski JQ, Clark CM. Comparison of xMAP and ELISA assays for detecting cerebrospinal fluid biomarkers of Alzheimer's disease. Journal of Alzheimer's Disease : Jad. 31: 439-45. PMID 22571982 DOI: 10.3233/JAD-2012-120082  1
2012 Coppola G, Chinnathambi S, Lee JJ, Dombroski BA, Baker MC, Soto-Ortolaza AI, Lee SE, Klein E, Huang AY, Sears R, Lane JR, Karydas AM, Kenet RO, Biernat J, Wang LS, et al. Evidence for a role of the rare p.A152T variant in MAPT in increasing the risk for FTD-spectrum and Alzheimer's diseases. Human Molecular Genetics. 21: 3500-12. PMID 22556362 DOI: 10.1093/hmg/dds161  1
2012 Neale BM, Kou Y, Liu L, Ma'ayan A, Samocha KE, Sabo A, Lin CF, Stevens C, Wang LS, Makarov V, Polak P, Yoon S, Maguire J, Crawford EL, Campbell NG, et al. Patterns and rates of exonic de novo mutations in autism spectrum disorders. Nature. 485: 242-5. PMID 22495311 DOI: 10.1038/nature11011  1
2012 Li F, Ryvkin P, Childress DM, Valladares O, Gregory BD, Wang LS. SAVoR: a server for sequencing annotation and visualization of RNA structures. Nucleic Acids Research. 40: W59-64. PMID 22492627 DOI: 10.1093/nar/gks310  1
2012 Irwin DJ, McMillan CT, Toledo JB, Arnold SE, Shaw LM, Wang LS, Van Deerlin V, Lee VM, Trojanowski JQ, Grossman M. Comparison of cerebrospinal fluid levels of tau and Aβ 1-42 in Alzheimer disease and frontotemporal degeneration using 2 analytical platforms. Archives of Neurology. 69: 1018-25. PMID 22490326 DOI: 10.1001/archneurol.2012.26  1
2012 Liu N, Landreh M, Cao K, Abe M, Hendriks GJ, Kennerdell JR, Zhu Y, Wang LS, Bonini NM. The microRNA miR-34 modulates ageing and neurodegeneration in Drosophila. Nature. 482: 519-23. PMID 22343898 DOI: 10.1038/nature10810  1
2011 Meng W, Yunk L, Wang LS, Maganty A, Xue E, Cohen PL, Eisenberg RA, Weigert MG, Mancini SJ, Prak ET. Selection of individual VH genes occurs at the pro-B to pre-B cell transition. Journal of Immunology (Baltimore, Md. : 1950). 187: 1835-44. PMID 21746964 DOI: 10.4049/jimmunol.1100207  1
2011 Höglinger GU, Melhem NM, Dickson DW, Sleiman PM, Wang LS, Klei L, Rademakers R, de Silva R, Litvan I, Riley DE, van Swieten JC, Heutink P, Wszolek ZK, Uitti RJ, Vandrovcova J, et al. Identification of common variants influencing risk of the tauopathy progressive supranuclear palsy. Nature Genetics. 43: 699-705. PMID 21685912 DOI: 10.1038/ng.859  1
2011 Wang LS, Leebens-Mack J, Wall PK, Beckmann K, Depamphilis CW, Warnow T. The impact of multiple protein sequence alignment on phylogenetic estimation Ieee/Acm Transactions On Computational Biology and Bioinformatics. 8: 1108-1119. PMID 21566256 DOI: 10.1109/TCBB.2009.68  1
2011 Naj AC, Jun G, Beecham GW, Wang LS, Vardarajan BN, Buros J, Gallins PJ, Buxbaum JD, Jarvik GP, Crane PK, Larson EB, Bird TD, Boeve BF, Graff-Radford NR, De Jager PL, et al. Common variants at MS4A4/MS4A6E, CD2AP, CD33 and EPHA1 are associated with late-onset Alzheimer's disease. Nature Genetics. 43: 436-41. PMID 21460841 DOI: 10.1038/ng.801  1
2010 Zheng Q, Ryvkin P, Li F, Dragomir I, Valladares O, Yang J, Cao K, Wang LS, Gregory BD. Genome-wide double-stranded RNA sequencing reveals the functional significance of base-paired RNAs in Arabidopsis. Plos Genetics. 6: e1001141. PMID 20941385 DOI: 10.1371/journal.pgen.1001141  1
2010 Han MR, Schellenberg GD, Wang LS. Genome-wide association reveals genetic effects on human Aβ42 and Ï„ protein levels in cerebrospinal fluids: a case control study. Bmc Neurology. 10: 90. PMID 20932310 DOI: 10.1186/1471-2377-10-90  1
2010 Cao K, Chen-Plotkin AS, Plotkin JB, Wang LS. Age-correlated gene expression in normal and neurodegenerative human brain tissues. Plos One. 5. PMID 20927326 DOI: 10.1371/journal.pone.0013098  1
2010 Jun G, Naj AC, Beecham GW, Wang LS, Buros J, Gallins PJ, Buxbaum JD, Ertekin-Taner N, Fallin MD, Friedland R, Inzelberg R, Kramer P, Rogaeva E, St George-Hyslop P, et al. Meta-analysis confirms CR1, CLU, and PICALM as alzheimer disease risk loci and reveals interactions with APOE genotypes. Archives of Neurology. 67: 1473-84. PMID 20697030 DOI: 10.1001/archneurol.2010.201  1
2010 Merlo LM, Wang LS, Pepper JW, Rabinovitch PS, Maley CC. Polyploidy, aneuploidy and the evolution of cancer. Advances in Experimental Medicine and Biology. 676: 1-13. PMID 20687466 DOI: 10.1007/978-1-4419-6199-0_1  1
2010 Trojanowski JQ, Arnold SE, Karlawish JH, Brunden K, Cary M, Davatzikos C, Detre J, Gaulton G, Grossman M, Hurtig H, Jedrziewski K, McCluskey L, Naylor M, Polsky D, Schellenberg GD, ... ... Wang LS, et al. Design of comprehensive Alzheimer's disease centers to address unmet national needs. Alzheimer's & Dementia : the Journal of the Alzheimer's Association. 6: 150-5. PMID 20298979 DOI: 10.1016/j.jalz.2009.11.004  1
2010 Van Deerlin VM, Sleiman PM, Martinez-Lage M, Chen-Plotkin A, Wang LS, Graff-Radford NR, Dickson DW, Rademakers R, Boeve BF, Grossman M, Arnold SE, Mann DM, Pickering-Brown SM, Seelaar H, Heutink P, et al. Common variants at 7p21 are associated with frontotemporal lobar degeneration with TDP-43 inclusions. Nature Genetics. 42: 234-9. PMID 20154673 DOI: 10.1038/ng.536  1
2010 Ryvkin P, Hershman SG, Wang LS, Johnson FB. Computational approaches to the detection and analysis of sequences with intramolecular G-quadruplex forming potential. Methods in Molecular Biology (Clifton, N.J.). 608: 39-50. PMID 20012414 DOI: 10.1007/978-1-59745-363-9_3  1
2010 Johnson JE, Cao K, Ryvkin P, Wang LS, Johnson FB. Altered gene expression in the Werner and Bloom syndromes is associated with sequences having G-quadruplex forming potential. Nucleic Acids Research. 38: 1114-22. PMID 19966276 DOI: 10.1093/nar/gkp1103  1
2009 Pearce EL, Walsh MC, Cejas PJ, Harms GM, Shen H, Wang LS, Jones RG, Choi Y. Enhancing CD8 T-cell memory by modulating fatty acid metabolism. Nature. 460: 103-7. PMID 19494812 DOI: 10.1038/nature08097  1
2008 Hershman SG, Chen Q, Lee JY, Kozak ML, Yue P, Wang LS, Johnson FB. Genomic distribution and functional analyses of potential G-quadruplex-forming sequences in Saccharomyces cerevisiae. Nucleic Acids Research. 36: 144-56. PMID 17999996 DOI: 10.1093/nar/gkm986  1
2007 Singh LN, Wang LS, Hannenhalli S. TREMOR--a tool for retrieving transcriptional modules by incorporating motif covariance. Nucleic Acids Research. 35: 7360-71. PMID 17962303 DOI: 10.1093/nar/gkm885  1
2006 Wang LS, Wagner D, Kwon CS, Su Y, Kim J. Transcriptional target prediction using qualitative reasoning. Conference Proceedings : ... Annual International Conference of the Ieee Engineering in Medicine and Biology Society. Ieee Engineering in Medicine and Biology Society. Annual Conference. 1: 3138-41. PMID 17947008 DOI: 10.1109/IEMBS.2006.259290  1
2006 Wang LS, Warnow T, Moret BM, Jansen RK, Raubeson LA. Distance-based genome rearrangement phylogeny. Journal of Molecular Evolution. 63: 473-83. PMID 17021931 DOI: 10.1007/s00239-005-0216-y  1
2006 Everett L, Wang LS, Hannenhalli S. Dense subgraph computation via stochastic search: application to detect transcriptional modules. Bioinformatics (Oxford, England). 22: e117-23. PMID 16873461 DOI: 10.1093/bioinformatics/btl260  1
2006 Cui L, Leebens-Mack J, Wang LS, Tang J, Rymarquis L, Stern DB, dePamphilis CW. Adaptive evolution of chloroplast genome structure inferred using a parametric bootstrap approach. Bmc Evolutionary Biology. 6: 13. PMID 16469102 DOI: 10.1186/1471-2148-6-13  1
2005 Ge F, Wang LS, Kim J. The cobweb of life revealed by genome-scale estimates of horizontal gene transfer. Plos Biology. 3: e316. PMID 16122348 DOI: 10.1371/journal.pbio.0030316  1
2005 Hannenhalli S, Wang LS. Enhanced position weight matrices using mixture models. Bioinformatics (Oxford, England). 21: i204-12. PMID 15961459 DOI: 10.1093/bioinformatics/bti1001  1
2002 Stockham C, Wang LS, Warnow T. Statistically based postprocessing of phylogenetic analysis by clustering. Bioinformatics (Oxford, England). 18: S285-93. PMID 12169558  1
2002 Wang LS, Jansen RK, Moret BM, Raubeson LA, Warnow T. Fast phylogenetic methods for the analysis of genome rearrangement data: an empirical study. Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 524-35. PMID 11928504  1
2001 Moret BM, Wang LS, Warnow T, Wyman SK. New approaches for reconstructing phylogenies from gene order data. Bioinformatics (Oxford, England). 17: S165-73. PMID 11473006  1
2000 Cosner ME, Jansen RK, Moret BM, Raubeson LA, Wang LS, Warnow T, Wyman S. A new fast heuristic for computing the breakpoint phylogeny and experimental phylogenetic analyses of real and synthetic data. Proceedings / ... International Conference On Intelligent Systems For Molecular Biology ; Ismb. International Conference On Intelligent Systems For Molecular Biology. 8: 104-15. PMID 10977071  1
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