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Usman W. Roshan, Ph.D. - Publications

Affiliations: 
2004 University of Texas at Austin, Austin, Texas, U.S.A. 
Area:
Computer Science
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15 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Aljouie A, Zhong L, Roshan U. High scoring segment selection for pairwise whole genome sequence alignment with the maximum scoring subsequence and GPUs International Journal of Computational Biology and Drug Design. 13: 71-81. DOI: 10.1504/Ijcbdd.2020.105097  0.447
2014 Turki T, Roshan U. MaxSSmap: a GPU program for mapping divergent short reads to genomes with the maximum scoring subsequence Bmc Genomics. 15: 969-969. PMID 25398475 DOI: 10.1186/1471-2164-15-969  0.335
2014 Roshan U. Multiple sequence alignment using probcons and probalign Methods of Molecular Biology. 1079: 147-153. PMID 24170400 DOI: 10.1007/978-1-62703-646-7_9  0.399
2010 Chikkagoudar S, Livesay DR, Roshan U. PLAST-ncRNA: Partition function Local Alignment Search Tool for non-coding RNA sequences Nucleic Acids Research. 38: 59-63. PMID 20522510 DOI: 10.1093/Nar/Gkq487  0.444
2008 Roshan U, Chikkagoudar S, Livesay DR. Searching for evolutionary distant RNA homologs within genomic sequences using partition function posterior probabilities. Bmc Bioinformatics. 9: 61-61. PMID 18226231 DOI: 10.1186/1471-2105-9-61  0.457
2007 Livesay DR, Kidd PD, Eskandari S, Roshan U. Assessing the ability of sequence-based methods to provide functional insight within membrane integral proteins: a case study analyzing the neurotransmitter/Na+ symporter family. Bmc Bioinformatics. 8: 397. PMID 17941992 DOI: 10.1186/1471-2105-8-397  0.436
2007 Chikkagoudar S, Roshan U, Livesay DR. eProbalign: generation and manipulation of multiple sequence alignments using partition function posterior probabilities Nucleic Acids Research. 35: 675-677. PMID 17485479 DOI: 10.1093/Nar/Gkm267  0.417
2006 Dotsenko Y, Coarfa C, Nakhleh L, Mellor-Crummey J, Roshan U. PRec-I-DCM3: a parallel framework for fast and accurate large-scale phylogeny reconstruction. International Journal of Bioinformatics Research and Applications. 2: 407-19. PMID 18048181 DOI: 10.1504/Ijbra.2006.011039  0.602
2006 Roshan U, Livesay DR. Probalign: multiple sequence alignment using partition function posterior probabilities Bioinformatics. 22: 2715-2721. PMID 16954142 DOI: 10.1093/Bioinformatics/Btl472  0.505
2006 Bader DA, Roshan U, Stamatakis A. Computational Grand Challenges in Assembling the Tree of Life: Problems and Solutions Advances in Computers. 68: 127-176. DOI: 10.1016/S0065-2458(06)68004-2  0.359
2005 Du Z, Lin F, Roshan UW. Reconstruction of large phylogenetic trees: a parallel approach. Computational Biology and Chemistry. 29: 273-80. PMID 16040277 DOI: 10.1016/J.Compbiolchem.2005.06.003  0.396
2004 Roshan UW, Moret BM, Warnow T, Williams TL. Rec-I-DCM3: a fast algorithmic technique for reconstructing large phylogenetic trees. Proceedings / Ieee Computational Systems Bioinformatics Conference, Csb. Ieee Computational Systems Bioinformatics Conference. 98-109. PMID 16448004  0.65
2004 Roshan UW, Warnow T, Moret BME, Williams TL. Rec-I-DCM3: A fast algorithmic technique for reconstructing large phylogenetic trees Proceedings - 2004 Ieee Computational Systems Bioinformatics Conference, Csb 2004. 98-109.  0.65
2002 Nakhleh L, Moret BM, Roshan U, St John K, Sun J, Warnow T. The accuracy of fast phylogenetic methods for large datasets. Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 211-22. PMID 11928477  0.665
2001 Nakhleh L, Roshan U, St John K, Sun J, Warnow T. Designing fast converging phylogenetic methods. Bioinformatics (Oxford, England). 17: S190-8. PMID 11473009 DOI: 10.1093/Bioinformatics/17.Suppl_1.S190  0.629
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