Year |
Citation |
Score |
2020 |
Ayati M, Chance MR, Koyuturk M. Co-Phosphorylation Networks Reveal Subtype-Specific Signaling Modules in Breast Cancer. Bioinformatics (Oxford, England). PMID 32730576 DOI: 10.1093/Bioinformatics/Btaa678 |
0.332 |
|
2020 |
Cowman T, Coşkun M, Grama A, Koyutürk M. Integrated querying and version control of context-specific biological networks. Database : the Journal of Biological Databases and Curation. 2020. PMID 32294194 DOI: 10.1093/Database/Baaa018 |
0.459 |
|
2019 |
Stanfield Z, Johnson MR, Blanks AM, Romero R, Chance MR, Mesiano S, Koyutürk M. Myometrial Transcriptional Signatures of Human Parturition. Frontiers in Genetics. 10: 185. PMID 30988671 DOI: 10.3389/Fgene.2019.00185 |
0.383 |
|
2019 |
Savel D, Koyutürk M. Characterizing human genomic coevolution in locus-gene regulatory interactions. Biodata Mining. 12: 8. PMID 30923571 DOI: 10.1186/S13040-019-0195-Y |
0.322 |
|
2019 |
Ayati M, Wiredja D, Schlatzer D, Maxwell S, Li M, Koyutürk M, Chance MR. CoPhosK: A method for comprehensive kinase substrate annotation using co-phosphorylation analysis. Plos Computational Biology. 15: e1006678. PMID 30811403 DOI: 10.1371/Journal.Pcbi.1006678 |
0.32 |
|
2017 |
Cowman T, Koyutürk M. Prioritizing tests of epistasis through hierarchical representation of genomic redundancies. Nucleic Acids Research. PMID 28605458 DOI: 10.1093/Nar/Gkx505 |
0.378 |
|
2017 |
Maxwell S, Chance MR, Koyutürk M. Linearity of network proximity measures: implications for set-based queries and significance testing. Bioinformatics (Oxford, England). 33: 1354-1361. PMID 28453667 DOI: 10.1093/Bioinformatics/Btw733 |
0.434 |
|
2017 |
Stanfield Z, Coşkun M, Koyutürk M. Drug Response Prediction as a Link Prediction Problem. Scientific Reports. 7: 40321. PMID 28067293 DOI: 10.1038/Srep40321 |
0.36 |
|
2016 |
Qiao S, Koyuturk M, Ozsoyoglu MZ. Querying of Disparate Association and Interaction Data in Biomedical Applications. Ieee/Acm Transactions On Computational Biology and Bioinformatics. PMID 27959818 DOI: 10.1109/Tcbb.2016.2637344 |
0.399 |
|
2016 |
Ayati M, Koyutürk M. PoCos: Population Covering Locus Sets for Risk Assessment in Complex Diseases. Plos Computational Biology. 12: e1005195. PMID 27835645 DOI: 10.1371/Journal.Pcbi.1005195 |
0.357 |
|
2016 |
Ni J, Koyuturk M, Tong H, Haines J, Xu R, Zhang X. Disease gene prioritization by integrating tissue-specific molecular networks using a robust multi-network model. Bmc Bioinformatics. 17: 453. PMID 27829360 DOI: 10.1186/S12859-016-1317-X |
0.409 |
|
2015 |
Ayati M, Erten S, Chance MR, Koyutürk M. MOBAS: identification of disease-associated protein subnetworks using modularity-based scoring. Eurasip Journal On Bioinformatics & Systems Biology. 2015: 7. PMID 28194175 DOI: 10.1186/S13637-015-0025-6 |
0.38 |
|
2015 |
Ruffalo M, Koyutürk M, Sharan R. Network-Based Integration of Disparate Omic Data To Identify "Silent Players" in Cancer. Plos Computational Biology. 11: e1004595. PMID 26683094 DOI: 10.1371/Journal.Pcbi.1004595 |
0.415 |
|
2014 |
Hou D, Koyutürk M. Comprehensive evaluation of composite gene features in cancer outcome prediction. Cancer Informatics. 13: 93-104. PMID 25780335 DOI: 10.4137/Cin.S14028 |
0.322 |
|
2014 |
Yava? G, Koyutürk M, Gould MP, McMahon S, LaFramboise T. DB2: a probabilistic approach for accurate detection of tandem duplication breakpoints using paired-end reads. Bmc Genomics. 15: 175. PMID 24597945 DOI: 10.1186/1471-2164-15-175 |
0.338 |
|
2013 |
Ayati M, Erten S, Koyuturk M. What do we learn from network-based analysis of GWAS data? F1000research. 4. DOI: 10.7490/F1000Research.1093448.1 |
0.356 |
|
2013 |
Kahveci T, Salem S, Koyuturk M. Guest editorial for special section on BIOKDD Ieee/Acm Transactions On Computational Biology and Bioinformatics. 10: 1199-1200. DOI: 10.1109/Tcbb.2013.184 |
0.331 |
|
2012 |
Liu Y, Maxwell S, Feng T, Zhu X, Elston RC, Koyutürk M, Chance MR. Gene, pathway and network frameworks to identify epistatic interactions of single nucleotide polymorphisms derived from GWAS data. Bmc Systems Biology. 6: S15. PMID 23281810 DOI: 10.1186/1752-0509-6-S3-S15 |
0.394 |
|
2012 |
Erten S, Chowdhury SA, Guan X, Nibbe RK, Barnholtz-Sloan JS, Chance MR, Koyutürk M. Identifying stage-specific protein subnetworks for colorectal cancer. Bmc Proceedings. 6: S1. PMID 23173715 DOI: 10.1186/1753-6561-6-S7-S1 |
0.444 |
|
2012 |
Saha S, Roman T, Galante A, Koyutürk M, Ewing RM. Network-based approaches for extending the Wnt signalling pathway and identifying context-specific sub-networks. International Journal of Computational Biology and Drug Design. 5: 185-205. PMID 23013649 DOI: 10.1504/Ijcbdd.2012.049203 |
0.365 |
|
2012 |
Liu Y, Koyutürk M, Barnholtz-Sloan JS, Chance MR. Gene interaction enrichment and network analysis to identify dysregulated pathways and their interactions in complex diseases. Bmc Systems Biology. 6: 65. PMID 22694839 DOI: 10.1186/1752-0509-6-65 |
0.343 |
|
2012 |
Bebek G, Koyutürk M, Price ND, Chance MR. Network biology methods integrating biological data for translational science. Briefings in Bioinformatics. 13: 446-59. PMID 22390873 DOI: 10.1093/Bib/Bbr075 |
0.451 |
|
2012 |
Patel V, Gokulrangan G, Chowdhury S, Chen Y, Sloan A, Koyuturk M, Barnholtz-Sloan J, Chance M. Abstract 4936: Network signatures of survival in glioblastoma multiforme Cancer Research. 72: 4936-4936. DOI: 10.1158/1538-7445.Am2012-4936 |
0.414 |
|
2012 |
Koyuturk M. Using Protein Interaction Networks to Understand Complex Diseases Ieee Computer. 45: 31-38. DOI: 10.1109/Mc.2012.40 |
0.372 |
|
2011 |
Erten S, Bebek G, Koyutürk M. Vavien: an algorithm for prioritizing candidate disease genes based on topological similarity of proteins in interaction networks. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 18: 1561-74. PMID 22035267 DOI: 10.1089/Cmb.2011.0154 |
0.424 |
|
2011 |
Ruffalo M, LaFramboise T, Koyutürk M. Comparative analysis of algorithms for next-generation sequencing read alignment. Bioinformatics (Oxford, England). 27: 2790-6. PMID 21856737 DOI: 10.1093/Bioinformatics/Btr477 |
0.349 |
|
2011 |
Erten S, Bebek G, Ewing RM, Koyutürk M. DADA: Degree-Aware Algorithms for Network-Based Disease Gene Prioritization. Biodata Mining. 4: 19. PMID 21699738 DOI: 10.1186/1756-0381-4-19 |
0.448 |
|
2010 |
Koyutürk M. Algorithmic and analytical methods in network biology. Wiley Interdisciplinary Reviews. Systems Biology and Medicine. 2: 277-92. PMID 20836029 DOI: 10.1002/Wsbm.61 |
0.452 |
|
2010 |
Nibbe RK, Koyutürk M, Chance MR. An integrative -omics approach to identify functional sub-networks in human colorectal cancer. Plos Computational Biology. 6: e1000639. PMID 20090827 DOI: 10.1371/Journal.Pcbi.1000639 |
0.432 |
|
2009 |
Yavas G, Koyutürk M, Ozsoyoğlu M, Gould MP, LaFramboise T. An optimization framework for unsupervised identification of rare copy number variation from SNP array data. Genome Biology. 10: R119. PMID 19849861 DOI: 10.1186/Gb-2009-10-10-R119 |
0.338 |
|
2009 |
Erten S, Li X, Bebek G, Li J, Koyutürk M. Phylogenetic analysis of modularity in protein interaction networks. Bmc Bioinformatics. 10: 333. PMID 19828041 DOI: 10.1186/1471-2105-10-333 |
0.417 |
|
2009 |
Carbunar B, Ramanathan MK, Koyutürk M, Jagannathan S, Grama A. Efficient tag detection in RFID systems Journal of Parallel and Distributed Computing. 69: 180-196. DOI: 10.1016/J.Jpdc.2008.06.013 |
0.352 |
|
2008 |
Ferreira RA, Koyutürk M, Jagannathan S, Grama A. Semantic indexing in structured peer-to-peer networks Journal of Parallel and Distributed Computing. 68: 64-77. DOI: 10.1016/J.Jpdc.2007.06.003 |
0.423 |
|
2007 |
Koyutürk M, Szpankowski W, Grama A. Assessing significance of connectivity and conservation in protein interaction networks. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 14: 747-64. PMID 17691892 DOI: 10.1089/Cmb.2007.R014 |
0.625 |
|
2006 |
Koyutürk M, Kim Y, Subramaniam S, Szpankowski W, Grama A. Detecting conserved interaction patterns in biological networks. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 13: 1299-322. PMID 17037960 DOI: 10.1089/Cmb.2006.13.1299 |
0.628 |
|
2006 |
Koyutürk M, Kim Y, Topkara U, Subramaniam S, Szpankowski W, Grama A. Pairwise alignment of protein interaction networks. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 13: 182-99. PMID 16597234 DOI: 10.1089/Cmb.2006.13.182 |
0.634 |
|
2006 |
Kim Y, Koyutürk M, Topkara U, Grama A, Subramaniam S. Inferring functional information from domain co-evolution. Bioinformatics (Oxford, England). 22: 40-9. PMID 16301205 DOI: 10.1093/Bioinformatics/Bti723 |
0.302 |
|
2006 |
Koyutürk M, Grama A, Ramakrishnan N. Nonorthogonal decomposition of binary matrices for bounded-error data compression and analysis Acm Transactions On Mathematical Software (Toms). 32: 33-69. DOI: 10.1145/1132973.1132976 |
0.353 |
|
2006 |
Chi J, Koyuturk M, Grama A. Conquest: A coarse-grained algorithm for constructing summaries of distributed discrete datasets Algorithmica (New York). 45: 377-401. DOI: 10.1007/S00453-006-1218-X |
0.359 |
|
2005 |
Koyuturk M, Grama A, Ramakrishnan N. Compression, clustering, and pattern discovery in very high-dimensional discrete-attribute data sets Ieee Transactions On Knowledge and Data Engineering. 17: 447-461. DOI: 10.1109/Tkde.2005.55 |
0.371 |
|
2005 |
Koyutürk M, Aykanat C. Iterative-improvement-based declustering heuristics for multi-disk databases Information Systems. 30: 47-70. DOI: 10.1016/J.Is.2003.08.003 |
0.358 |
|
2005 |
Koyutürk M, Grama A, Szpankowski W. Pairwise local alignment of protein interaction networks guided by models of evolution Lecture Notes in Bioinformatics (Subseries of Lecture Notes in Computer Science). 3500: 48-65. |
0.605 |
|
2004 |
Koyutürk M, Grama A, Szpankowski W. An efficient algorithm for detecting frequent subgraphs in biological networks. Bioinformatics (Oxford, England). 20: i200-7. PMID 15262800 DOI: 10.1093/bioinformatics/bth919 |
0.585 |
|
2003 |
Koyutürk M, Grama A, Szpankowski W. Algorithms for bounded-error correlation of high dimensional data in microarray experiments Proceedings of the 2003 Ieee Bioinformatics Conference, Csb 2003. 575-580. DOI: 10.1109/CSB.2003.1227412 |
0.529 |
|
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