Mehmet Koyuturk, Ph.D. - Publications

Affiliations: 
2006 Purdue University, West Lafayette, IN, United States 
Area:
Bioinformatics Biology

33 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Cowman T, Coşkun M, Grama A, Koyutürk M. Integrated querying and version control of context-specific biological networks. Database : the Journal of Biological Databases and Curation. 2020. PMID 32294194 DOI: 10.1093/Database/Baaa018  0.76
2016 Savel D, LaFramboise T, Grama A, Koyuturk M. Pluribus - Exploring the Limits of Error Correction Using a Suffix Tree. Ieee/Acm Transactions On Computational Biology and Bioinformatics / Ieee, Acm. PMID 27362987 DOI: 10.1109/Tcbb.2016.2586060  0.76
2016 Coskun M, Koyuturk M. Link Prediction in Large Networks by Comparing the Global View of Nodes in the Network Proceedings - 15th Ieee International Conference On Data Mining Workshop, Icdmw 2015. 485-492. DOI: 10.1109/ICDMW.2015.195  0.76
2016 Karakurt G, Patel V, Whiting K, Koyutürk M. Mining Electronic Health Records Data: Domestic Violence and Adverse Health Effects Journal of Family Violence. 1-9. DOI: 10.1007/s10896-016-9872-5  0.76
2015 Ruffalo M, Husseinzadeh H, Makishima H, Przychodzen B, Ashkar M, Koyutürk M, Maciejewski JP, LaFramboise T. Whole-exome sequencing enhances prognostic classification of myeloid malignancies. Journal of Biomedical Informatics. PMID 26453823 DOI: 10.1016/j.jbi.2015.10.003  0.76
2015 Koyuturk M, Nibbe RK. Omics and biomarkers development for intestinal tumorigenesis Intestinal Tumorigenesis: Mechanisms of Development &Amp; Progression. 365-389. DOI: 10.1007/978-3-319-19986-3_12  0.76
2014 Hou D, Koyutürk M. Comprehensive evaluation of composite gene features in cancer outcome prediction. Cancer Informatics. 13: 93-104. PMID 25780335 DOI: 10.4137/Cin.S14028  0.76
2014 Koyutürk M, Subramaniam S, Grama A. Introduction to network biology Functional Coherence of Molecular Networks in Bioinformatics. 1-13. DOI: 10.1007/978-1-4614-0320-3_1  0.76
2014 Koyutürk M, Grama A, Subramaniam S. Preface Functional Coherence of Molecular Networks in Bioinformatics. v-vi. DOI: 10.1007/978-1-4614-0320-3  0.76
2013 Patel VN, Gokulrangan G, Chowdhury SA, Chen Y, Sloan AE, Koyutürk M, Barnholtz-Sloan J, Chance MR. Network signatures of survival in glioblastoma multiforme. Plos Computational Biology. 9: e1003237. PMID 24068912 DOI: 10.1371/Journal.Pcbi.1003237  0.76
2013 Kahveci T, Salem S, Koyuturk M. Guest editorial for special section on BIOKDD Ieee/Acm Transactions On Computational Biology and Bioinformatics. 10: 1199-1200. DOI: 10.1109/Tcbb.2013.184  0.76
2012 Liu Y, Koyutürk M, Barnholtz-Sloan JS, Chance MR. Gene interaction enrichment and network analysis to identify dysregulated pathways and their interactions in complex diseases. Bmc Systems Biology. 6: 65. PMID 22694839 DOI: 10.1186/1752-0509-6-65  0.76
2012 Bebek G, Koyutürk M, Price ND, Chance MR. Network biology methods integrating biological data for translational science. Briefings in Bioinformatics. 13: 446-59. PMID 22390873 DOI: 10.1093/Bib/Bbr075  0.76
2011 Chowdhury SA, Nibbe RK, Chance MR, Koyutürk M. Subnetwork state functions define dysregulated subnetworks in cancer. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 18: 263-81. PMID 21385033 DOI: 10.1089/Cmb.2010.0269  0.76
2011 Liu Y, Patel S, Nibbe R, Maxwell S, Chowdhury SA, Koyuturk M, Zhu X, Larkin EK, Buxbaum SG, Punjabi NM, Gharib SA, Redline S, Chance MR. Systems biology analyses of gene expression and genome wide association study data in obstructive sleep apnea. Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 14-25. PMID 21121029  0.76
2011 Nibbe RK, Chowdhury SA, Koyutürk M, Ewing R, Chance MR. Protein-protein interaction networks and subnetworks in the biology of disease. Wiley Interdisciplinary Reviews. Systems Biology and Medicine. 3: 357-67. PMID 20865778 DOI: 10.1002/Wsbm.121  0.76
2011 Bebek G, Chance M, Koyuturk M, Price ND, De La Vega FM, Bustamante CD, Leal SM, Foster J, Moore J, Bernauer J, Flores S, Huang X, Shin S, Zhou R, Alkan C, et al. Pacific symposium on biocomputing 2011 Pacific Symposium On Biocomputing 2011, Psb 2011. v.  0.76
2011 Bebek G, Koyutürk M, Chance MR, Price ND. Integrative-omics for translational science-session introduction Pacific Symposium On Biocomputing 2011, Psb 2011. 1-3.  0.76
2010 Chowdhury SA, Koyutürk M. Identification of coordinately dysregulated subnetworks in complex phenotypes. Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 133-44. PMID 19908366 DOI: 10.1142/9789814295291_0016  0.76
2010 Manguoglu M, Koyutürk M, Sameh AH, Grama A. Weighted matrix ordering and parallel banded preconditioners for iterative linear system solvers Siam Journal On Scientific Computing. 32: 1201-1216. DOI: 10.1137/080713409  0.76
2010 Carbunar B, Krishna Ramanathan M, Koyuturk M, Jagannathan S, Grama A. Optimal Tag Coverage and Tag Report Elimination Rfid Systems: Research Trends and Challenges. 321-347. DOI: 10.1002/9780470665251.ch12  0.76
2009 Carbunar B, Ramanathan MK, Koyutürk M, Jagannathan S, Grama A. Efficient tag detection in RFID systems Journal of Parallel and Distributed Computing. 69: 180-196. DOI: 10.1016/J.Jpdc.2008.06.013  0.76
2008 Ramanathan MK, Koyuturk M, Grama A, Jagannathan S. PHALANX: A graph-theoretic framework for test case prioritization Proceedings of the Acm Symposium On Applied Computing. 667-673. DOI: 10.1145/1363686.1363848  0.76
2008 Ferreira RA, Koyutürk M, Jagannathan S, Grama A. Semantic indexing in structured peer-to-peer networks Journal of Parallel and Distributed Computing. 68: 64-77. DOI: 10.1016/J.Jpdc.2007.06.003  0.76
2007 Koyutürk M, Szpankowski W, Grama A. Assessing significance of connectivity and conservation in protein interaction networks. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 14: 747-64. PMID 17691892 DOI: 10.1089/Cmb.2007.R014  0.76
2007 Pandey J, Koyutürk M, Kim Y, Szpankowski W, Subramaniam S, Grama A. Functional annotation of regulatory pathways. Bioinformatics (Oxford, England). 23: i377-86. PMID 17646320 DOI: 10.1093/bioinformatics/btm203  0.76
2006 Koyutürk M, Kim Y, Subramaniam S, Szpankowski W, Grama A. Detecting conserved interaction patterns in biological networks. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 13: 1299-322. PMID 17037960 DOI: 10.1089/Cmb.2006.13.1299  0.76
2006 Koyutürk M, Kim Y, Topkara U, Subramaniam S, Szpankowski W, Grama A. Pairwise alignment of protein interaction networks. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 13: 182-99. PMID 16597234 DOI: 10.1089/Cmb.2006.13.182  0.76
2006 Kim Y, Koyutürk M, Topkara U, Grama A, Subramaniam S. Inferring functional information from domain co-evolution. Bioinformatics (Oxford, England). 22: 40-9. PMID 16301205 DOI: 10.1093/Bioinformatics/Bti723  0.76
2006 Chi J, Koyuturk M, Grama A. Conquest: A coarse-grained algorithm for constructing summaries of distributed discrete datasets Algorithmica (New York). 45: 377-401. DOI: 10.1007/S00453-006-1218-X  0.76
2005 Koyutürk M, Grama A, Szpankowski W. Pairwise local alignment of protein interaction networks guided by models of evolution Lecture Notes in Bioinformatics (Subseries of Lecture Notes in Computer Science). 3500: 48-65.  0.76
2004 Koyutürk M, Grama A, Szpankowski W. An efficient algorithm for detecting frequent subgraphs in biological networks. Bioinformatics (Oxford, England). 20: i200-7. PMID 15262800 DOI: 10.1093/bioinformatics/bth919  0.76
2003 Koyutürk M, Grama A, Szpankowski W. Algorithms for bounded-error correlation of high dimensional data in microarray experiments Proceedings of the 2003 Ieee Bioinformatics Conference, Csb 2003. 575-580. DOI: 10.1109/CSB.2003.1227412  0.76
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