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Mehmet Koyuturk, Ph.D. - Publications

Affiliations: 
2006 Purdue University, West Lafayette, IN, United States 
Area:
Bioinformatics Biology
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Year Citation  Score
2020 Ayati M, Chance MR, Koyuturk M. Co-Phosphorylation Networks Reveal Subtype-Specific Signaling Modules in Breast Cancer. Bioinformatics (Oxford, England). PMID 32730576 DOI: 10.1093/Bioinformatics/Btaa678  0.332
2020 Cowman T, Coşkun M, Grama A, Koyutürk M. Integrated querying and version control of context-specific biological networks. Database : the Journal of Biological Databases and Curation. 2020. PMID 32294194 DOI: 10.1093/Database/Baaa018  0.459
2019 Stanfield Z, Johnson MR, Blanks AM, Romero R, Chance MR, Mesiano S, Koyutürk M. Myometrial Transcriptional Signatures of Human Parturition. Frontiers in Genetics. 10: 185. PMID 30988671 DOI: 10.3389/Fgene.2019.00185  0.383
2019 Savel D, Koyutürk M. Characterizing human genomic coevolution in locus-gene regulatory interactions. Biodata Mining. 12: 8. PMID 30923571 DOI: 10.1186/S13040-019-0195-Y  0.322
2019 Ayati M, Wiredja D, Schlatzer D, Maxwell S, Li M, Koyutürk M, Chance MR. CoPhosK: A method for comprehensive kinase substrate annotation using co-phosphorylation analysis. Plos Computational Biology. 15: e1006678. PMID 30811403 DOI: 10.1371/Journal.Pcbi.1006678  0.32
2017 Cowman T, Koyutürk M. Prioritizing tests of epistasis through hierarchical representation of genomic redundancies. Nucleic Acids Research. PMID 28605458 DOI: 10.1093/Nar/Gkx505  0.378
2017 Maxwell S, Chance MR, Koyutürk M. Linearity of network proximity measures: implications for set-based queries and significance testing. Bioinformatics (Oxford, England). 33: 1354-1361. PMID 28453667 DOI: 10.1093/Bioinformatics/Btw733  0.434
2017 Stanfield Z, Coşkun M, Koyutürk M. Drug Response Prediction as a Link Prediction Problem. Scientific Reports. 7: 40321. PMID 28067293 DOI: 10.1038/Srep40321  0.36
2016 Qiao S, Koyuturk M, Ozsoyoglu MZ. Querying of Disparate Association and Interaction Data in Biomedical Applications. Ieee/Acm Transactions On Computational Biology and Bioinformatics. PMID 27959818 DOI: 10.1109/Tcbb.2016.2637344  0.399
2016 Ayati M, Koyutürk M. PoCos: Population Covering Locus Sets for Risk Assessment in Complex Diseases. Plos Computational Biology. 12: e1005195. PMID 27835645 DOI: 10.1371/Journal.Pcbi.1005195  0.357
2016 Ni J, Koyuturk M, Tong H, Haines J, Xu R, Zhang X. Disease gene prioritization by integrating tissue-specific molecular networks using a robust multi-network model. Bmc Bioinformatics. 17: 453. PMID 27829360 DOI: 10.1186/S12859-016-1317-X  0.409
2015 Ayati M, Erten S, Chance MR, Koyutürk M. MOBAS: identification of disease-associated protein subnetworks using modularity-based scoring. Eurasip Journal On Bioinformatics & Systems Biology. 2015: 7. PMID 28194175 DOI: 10.1186/S13637-015-0025-6  0.38
2015 Ruffalo M, Koyutürk M, Sharan R. Network-Based Integration of Disparate Omic Data To Identify "Silent Players" in Cancer. Plos Computational Biology. 11: e1004595. PMID 26683094 DOI: 10.1371/Journal.Pcbi.1004595  0.415
2014 Hou D, Koyutürk M. Comprehensive evaluation of composite gene features in cancer outcome prediction. Cancer Informatics. 13: 93-104. PMID 25780335 DOI: 10.4137/Cin.S14028  0.322
2014 Yava? G, Koyutürk M, Gould MP, McMahon S, LaFramboise T. DB2: a probabilistic approach for accurate detection of tandem duplication breakpoints using paired-end reads. Bmc Genomics. 15: 175. PMID 24597945 DOI: 10.1186/1471-2164-15-175  0.338
2013 Ayati M, Erten S, Koyuturk M. What do we learn from network-based analysis of GWAS data? F1000research. 4. DOI: 10.7490/F1000Research.1093448.1  0.356
2013 Kahveci T, Salem S, Koyuturk M. Guest editorial for special section on BIOKDD Ieee/Acm Transactions On Computational Biology and Bioinformatics. 10: 1199-1200. DOI: 10.1109/Tcbb.2013.184  0.331
2012 Liu Y, Maxwell S, Feng T, Zhu X, Elston RC, Koyutürk M, Chance MR. Gene, pathway and network frameworks to identify epistatic interactions of single nucleotide polymorphisms derived from GWAS data. Bmc Systems Biology. 6: S15. PMID 23281810 DOI: 10.1186/1752-0509-6-S3-S15  0.394
2012 Erten S, Chowdhury SA, Guan X, Nibbe RK, Barnholtz-Sloan JS, Chance MR, Koyutürk M. Identifying stage-specific protein subnetworks for colorectal cancer. Bmc Proceedings. 6: S1. PMID 23173715 DOI: 10.1186/1753-6561-6-S7-S1  0.444
2012 Saha S, Roman T, Galante A, Koyutürk M, Ewing RM. Network-based approaches for extending the Wnt signalling pathway and identifying context-specific sub-networks. International Journal of Computational Biology and Drug Design. 5: 185-205. PMID 23013649 DOI: 10.1504/Ijcbdd.2012.049203  0.365
2012 Liu Y, Koyutürk M, Barnholtz-Sloan JS, Chance MR. Gene interaction enrichment and network analysis to identify dysregulated pathways and their interactions in complex diseases. Bmc Systems Biology. 6: 65. PMID 22694839 DOI: 10.1186/1752-0509-6-65  0.343
2012 Bebek G, Koyutürk M, Price ND, Chance MR. Network biology methods integrating biological data for translational science. Briefings in Bioinformatics. 13: 446-59. PMID 22390873 DOI: 10.1093/Bib/Bbr075  0.451
2012 Patel V, Gokulrangan G, Chowdhury S, Chen Y, Sloan A, Koyuturk M, Barnholtz-Sloan J, Chance M. Abstract 4936: Network signatures of survival in glioblastoma multiforme Cancer Research. 72: 4936-4936. DOI: 10.1158/1538-7445.Am2012-4936  0.414
2012 Koyuturk M. Using Protein Interaction Networks to Understand Complex Diseases Ieee Computer. 45: 31-38. DOI: 10.1109/Mc.2012.40  0.372
2011 Erten S, Bebek G, Koyutürk M. Vavien: an algorithm for prioritizing candidate disease genes based on topological similarity of proteins in interaction networks. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 18: 1561-74. PMID 22035267 DOI: 10.1089/Cmb.2011.0154  0.424
2011 Ruffalo M, LaFramboise T, Koyutürk M. Comparative analysis of algorithms for next-generation sequencing read alignment. Bioinformatics (Oxford, England). 27: 2790-6. PMID 21856737 DOI: 10.1093/Bioinformatics/Btr477  0.349
2011 Erten S, Bebek G, Ewing RM, Koyutürk M. DADA: Degree-Aware Algorithms for Network-Based Disease Gene Prioritization. Biodata Mining. 4: 19. PMID 21699738 DOI: 10.1186/1756-0381-4-19  0.448
2010 Koyutürk M. Algorithmic and analytical methods in network biology. Wiley Interdisciplinary Reviews. Systems Biology and Medicine. 2: 277-92. PMID 20836029 DOI: 10.1002/Wsbm.61  0.452
2010 Nibbe RK, Koyutürk M, Chance MR. An integrative -omics approach to identify functional sub-networks in human colorectal cancer. Plos Computational Biology. 6: e1000639. PMID 20090827 DOI: 10.1371/Journal.Pcbi.1000639  0.432
2009 Yavas G, Koyutürk M, Ozsoyoğlu M, Gould MP, LaFramboise T. An optimization framework for unsupervised identification of rare copy number variation from SNP array data. Genome Biology. 10: R119. PMID 19849861 DOI: 10.1186/Gb-2009-10-10-R119  0.338
2009 Erten S, Li X, Bebek G, Li J, Koyutürk M. Phylogenetic analysis of modularity in protein interaction networks. Bmc Bioinformatics. 10: 333. PMID 19828041 DOI: 10.1186/1471-2105-10-333  0.417
2009 Carbunar B, Ramanathan MK, Koyutürk M, Jagannathan S, Grama A. Efficient tag detection in RFID systems Journal of Parallel and Distributed Computing. 69: 180-196. DOI: 10.1016/J.Jpdc.2008.06.013  0.352
2008 Ferreira RA, Koyutürk M, Jagannathan S, Grama A. Semantic indexing in structured peer-to-peer networks Journal of Parallel and Distributed Computing. 68: 64-77. DOI: 10.1016/J.Jpdc.2007.06.003  0.423
2007 Koyutürk M, Szpankowski W, Grama A. Assessing significance of connectivity and conservation in protein interaction networks. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 14: 747-64. PMID 17691892 DOI: 10.1089/Cmb.2007.R014  0.625
2006 Koyutürk M, Kim Y, Subramaniam S, Szpankowski W, Grama A. Detecting conserved interaction patterns in biological networks. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 13: 1299-322. PMID 17037960 DOI: 10.1089/Cmb.2006.13.1299  0.628
2006 Koyutürk M, Kim Y, Topkara U, Subramaniam S, Szpankowski W, Grama A. Pairwise alignment of protein interaction networks. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 13: 182-99. PMID 16597234 DOI: 10.1089/Cmb.2006.13.182  0.634
2006 Kim Y, Koyutürk M, Topkara U, Grama A, Subramaniam S. Inferring functional information from domain co-evolution. Bioinformatics (Oxford, England). 22: 40-9. PMID 16301205 DOI: 10.1093/Bioinformatics/Bti723  0.302
2006 Koyutürk M, Grama A, Ramakrishnan N. Nonorthogonal decomposition of binary matrices for bounded-error data compression and analysis Acm Transactions On Mathematical Software (Toms). 32: 33-69. DOI: 10.1145/1132973.1132976  0.353
2006 Chi J, Koyuturk M, Grama A. Conquest: A coarse-grained algorithm for constructing summaries of distributed discrete datasets Algorithmica (New York). 45: 377-401. DOI: 10.1007/S00453-006-1218-X  0.359
2005 Koyuturk M, Grama A, Ramakrishnan N. Compression, clustering, and pattern discovery in very high-dimensional discrete-attribute data sets Ieee Transactions On Knowledge and Data Engineering. 17: 447-461. DOI: 10.1109/Tkde.2005.55  0.371
2005 Koyutürk M, Aykanat C. Iterative-improvement-based declustering heuristics for multi-disk databases Information Systems. 30: 47-70. DOI: 10.1016/J.Is.2003.08.003  0.358
2005 Koyutürk M, Grama A, Szpankowski W. Pairwise local alignment of protein interaction networks guided by models of evolution Lecture Notes in Bioinformatics (Subseries of Lecture Notes in Computer Science). 3500: 48-65.  0.605
2004 Koyutürk M, Grama A, Szpankowski W. An efficient algorithm for detecting frequent subgraphs in biological networks. Bioinformatics (Oxford, England). 20: i200-7. PMID 15262800 DOI: 10.1093/bioinformatics/bth919  0.585
2003 Koyutürk M, Grama A, Szpankowski W. Algorithms for bounded-error correlation of high dimensional data in microarray experiments Proceedings of the 2003 Ieee Bioinformatics Conference, Csb 2003. 575-580. DOI: 10.1109/CSB.2003.1227412  0.529
Low-probability matches (unlikely to be authored by this person)
2017 Wiredja DD, Koyutürk M, Chance MR. The KSEA App: a web-based tool for kinase activity inference from quantitative phosphoproteomics. Bioinformatics (Oxford, England). PMID 28655153 DOI: 10.1093/Bioinformatics/Btx415  0.298
2011 Liu Y, Patel S, Nibbe R, Maxwell S, Chowdhury SA, Koyuturk M, Zhu X, Larkin EK, Buxbaum SG, Punjabi NM, Gharib SA, Redline S, Chance MR. Systems biology analyses of gene expression and genome wide association study data in obstructive sleep apnea. Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 14-25. PMID 21121029  0.297
2010 Manguoglu M, Koyutürk M, Sameh AH, Grama A. Weighted matrix ordering and parallel banded preconditioners for iterative linear system solvers Siam Journal On Scientific Computing. 32: 1201-1216. DOI: 10.1137/080713409  0.292
2018 Liao P, Yori J, Keri R, Koyuturk M, Barnholtz-Sloan J. Abstract 2262: Inference of kinase activity for cancer phosphoproteomics using substrate prediction scores Cancer Research. 78: 2262-2262. DOI: 10.1158/1538-7445.Am2018-2262  0.291
2019 Stanfield Z, Amini P, Wang J, Yi L, Tan H, Chance MR, Koyutürk M, Mesiano S. Interplay of transcriptional signaling by progesterone, cyclic AMP, and inflammation in myometrial cells: implications for the control of human parturition. Molecular Human Reproduction. PMID 31211832 DOI: 10.1093/Molehr/Gaz028  0.29
2016 Coskun M, Koyuturk M. Link Prediction in Large Networks by Comparing the Global View of Nodes in the Network Proceedings - 15th Ieee International Conference On Data Mining Workshop, Icdmw 2015. 485-492. DOI: 10.1109/ICDMW.2015.195  0.287
2021 Coşkun M, Koyutürk M. Node Similarity Based Graph Convolution for Link Prediction in Biological Networks. Bioinformatics (Oxford, England). PMID 34152393 DOI: 10.1093/bioinformatics/btab464  0.279
2017 Stanfield Z, Coşkun M, Koyutürk M. Corrigendum: Drug Response Prediction as a Link Prediction Problem. Scientific Reports. 7: 44961. PMID 28332499 DOI: 10.1038/Srep44961  0.278
2017 Wiredja DD, Ayati M, Mazhar S, Sangodkar J, Maxwell S, Schlatzer D, Narla G, Koyutürk M, Chance MR. Phosphoproteomics Profiling of Non-Small Cell Lung Cancer Cells Treated with a Novel Phosphatase Activator. Proteomics. PMID 28961369 DOI: 10.1002/Pmic.201700214  0.274
2012 Liu Y, Koyutürk M, Maxwell S, Zhao Z, Chance MR. Integrative analysis of common neurodegenerative diseases using gene association, interaction networks and mRNA expression data. Amia Joint Summits On Translational Science Proceedings Amia Summit On Translational Science. 2012: 62-71. PMID 22779053  0.274
2015 Koyuturk M, Nibbe RK. Omics and biomarkers development for intestinal tumorigenesis Intestinal Tumorigenesis: Mechanisms of Development &Amp; Progression. 365-389. DOI: 10.1007/978-3-319-19986-3_12  0.274
2016 Savel D, LaFramboise T, Grama A, Koyuturk M. Pluribus - Exploring the Limits of Error Correction Using a Suffix Tree. Ieee/Acm Transactions On Computational Biology and Bioinformatics / Ieee, Acm. PMID 27362987 DOI: 10.1109/Tcbb.2016.2586060  0.273
2020 Karimi AM, Fada JS, Parrilla NA, Pierce BG, Koyuturk M, French RH, Braid JL. Generalized and Mechanistic PV Module Performance Prediction From Computer Vision and Machine Learning on Electroluminescence Images Ieee Journal of Photovoltaics. 10: 878-887. DOI: 10.1109/Jphotov.2020.2973448  0.271
2014 Koyutürk M, Subramaniam S, Grama A. Introduction to network biology Functional Coherence of Molecular Networks in Bioinformatics. 1-13. DOI: 10.1007/978-1-4614-0320-3_1  0.267
2014 Ayati M, Clark PL, Chance MR, Koyuturk M. Assessing collective disease association of multiple genomic loci F1000research. 5. DOI: 10.7490/F1000Research.1095380.1  0.265
2020 Deznabi I, Arabaci B, Koyutürk M, Tastan O. DeepKinZero: Zero-Shot Learning for Predicting Kinase-Phosphosite Associations Involving Understudied Kinases. Bioinformatics (Oxford, England). PMID 32044914 DOI: 10.1093/Bioinformatics/Btaa013  0.262
2014 Liu Y, Koyutürk M, Maxwell S, Xiang M, Veigl M, Cooper RS, Tayo BO, Li L, LaFramboise T, Wang Z, Zhu X, Chance MR. Discovery of common sequences absent in the human reference genome using pooled samples from next generation sequencing. Bmc Genomics. 15: 685. PMID 25129063 DOI: 10.1186/1471-2164-15-685  0.26
2019 Elmansy D, Koyutürk M. Cross-population analysis for functional characterization of type II diabetes variants. Bmc Bioinformatics. 20: 320. PMID 31216985 DOI: 10.1186/S12859-019-2835-0  0.257
2016 Niazi MK, Yao K, Zynger D, Clinton S, Chen J, Koyuturk M, LaFramboise T, Gurcan M. Visually Meaningful Histopathological Features for Automatic Grading of Prostate Cancer. Ieee Journal of Biomedical and Health Informatics. PMID 28113734 DOI: 10.1109/Jbhi.2016.2565515  0.25
2022 Ayati M, Yilmaz S, Blasco Tavares Pereira Lopes F, Chance M, Koyuturk M. Prediction of Kinase-Substrate Associations Using The Functional Landscape of Kinases and Phosphorylation Sites. Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 28: 73-84. PMID 36540966  0.248
2012 Ruffalo M, Koyutürk M, Ray S, LaFramboise T. Accurate estimation of short read mapping quality for next-generation genome sequencing. Bioinformatics (Oxford, England). 28: i349-i355. PMID 22962451 DOI: 10.1093/Bioinformatics/Bts408  0.247
2017 Stanfield Z, Coskun M, Koyuturk M. Drug response prediction as a link prediction problem F1000research. 6. DOI: 10.7490/F1000Research.1114676.1  0.243
2016 Maxwell S, Chance MR, Koyutürk M. Linearity of Network Proximity Measures: Implications for Set-based Queries and Significance Testing. Bioinformatics (Oxford, England). PMID 27993783 DOI: 10.1093/bioinformatics/btw733  0.24
2017 Topal K, Koyutürk M, Özsoyoğlu G. Effects of emotion and topic area on topic shifts in social media discussions Social Network Analysis and Mining. 7: 46. DOI: 10.1007/S13278-017-0465-Y  0.239
2018 Coşkun M, Grama A, Koyutürk M. Indexed fast network proximity querying Proceedings of the Vldb Endowment. 11: 840-852. DOI: 10.14778/3204028.3204029  0.238
2010 Yavaş G, Koyutürk M, Ozsoyoğlu M, Gould MP, Laframboise T. COKGEN: a software for the identification of rare copy number variation from SNP microarrays. Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 371-82. PMID 19908389  0.234
2012 Koyutürk M, Erten S, Chowdhury SA, Nibbe RK, Chance MR. Molecular networks and complex diseases Functional Coherence of Molecular Networks in Bioinformatics. 2147483647: 171-199. DOI: 10.1007/978-1-4614-0320-3_7  0.227
2017 Karakurt G, Patel V, Whiting K, Koyutürk M. Mining Electronic Health Records Data: Domestic Violence and Adverse Health Effects. Journal of Family Violence. 32: 79-87. PMID 28435184 DOI: 10.1007/S10896-016-9872-5  0.226
2021 Yılmaz S, Ayati M, Schlatzer D, Çiçek AE, Chance MR, Koyutürk M. Robust inference of kinase activity using functional networks. Nature Communications. 12: 1177. PMID 33608514 DOI: 10.1038/s41467-021-21211-6  0.219
2018 Liu D, Skomorovska Y, Song J, Bowler E, Harris R, Ravasz M, Bai S, Ayati M, Tamai K, Koyuturk M, Yuan X, Wang Z, Wang Y, Ewing RM. ELF3 is an antagonist of oncogenic-signalling-induced expression of EMT-TF ZEB1. Cancer Biology & Therapy. 1-11. PMID 30148686 DOI: 10.1080/15384047.2018.1507256  0.218
2010 Carbunar B, Krishna Ramanathan M, Koyuturk M, Jagannathan S, Grama A. Optimal Tag Coverage and Tag Report Elimination Rfid Systems: Research Trends and Challenges. 321-347. DOI: 10.1002/9780470665251.ch12  0.217
2021 Yilmaz S, Fakhouri M, Koyutürk M, Çiçek AE, Tastan O. Uncovering complementary sets of variants for predicting quantitative phenotypes. Bioinformatics (Oxford, England). PMID 34864867 DOI: 10.1093/bioinformatics/btab803  0.203
2019 Stanfield Z, Lai PF, Lei K, Johnson MR, Blanks AM, Romero R, Chance MR, Mesiano S, Koyutürk M. Corrigendum: Myometrial Transcriptional Signatures of Human Parturition. Frontiers in Genetics. 10: 515. PMID 31191621 DOI: 10.3389/Fgene.2019.00515  0.203
2021 Hacıaliefendioğlu AM, Yılmaz S, Smith D, Whiting J, Koyutürk M, Karakurt G. Data-driven identification of subtypes of intimate partner violence. Scientific Reports. 11: 6736. PMID 33762634 DOI: 10.1038/s41598-021-85947-3  0.193
2022 Ayati M, Yılmaz S, Chance MR, Koyuturk M. Functional Characterization of Co-Phosphorylation Networks. Bioinformatics (Oxford, England). PMID 35731218 DOI: 10.1093/bioinformatics/btac406  0.191
2008 Ramanathan MK, Koyuturk M, Grama A, Jagannathan S. PHALANX: A graph-theoretic framework for test case prioritization Proceedings of the Acm Symposium On Applied Computing. 667-673. DOI: 10.1145/1363686.1363848  0.155
2016 Whiting K, Liu LY, Koyutürk M, Karakurt G. NETWORK MAP OF ADVERSE HEALTH EFFECTS AMONG VICTIMS OF INTIMATE PARTNER VIOLENCE. Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 22: 324-335. PMID 27896986 DOI: 10.1142/9789813207813_0031  0.15
2022 Blasco Tavares Pereira Lopes F, Schlatzer D, Wang R, Li X, Feng E, Koyutürk M, Qi X, Chance MR. Temporal and sex-linked protein expression dynamics in a familial model of Alzheimer's Disease. Molecular & Cellular Proteomics : McP. 100280. PMID 35944844 DOI: 10.1016/j.mcpro.2022.100280  0.128
2023 Yılmaz S, Lopes FBTP, Schlatzer D, Wang R, Qi X, Koyutürk M, Chance MR. Exploring Temporal and Sex-Linked Dysregulation in Alzheimer's Disease Phospho-Proteome. Biorxiv : the Preprint Server For Biology. PMID 37645993 DOI: 10.1101/2023.08.15.553056  0.123
2022 Woerner J, Huang Y, Hutter S, Gurnari C, Sánchez JMH, Wang J, Huang Y, Schnabel D, Aaby M, Xu W, Thorat V, Jiang D, Jha BK, Koyuturk M, Maciejewski JP, et al. Circulating microbial content in myeloid malignancy patients is associated with disease subtypes and patient outcomes. Nature Communications. 13: 1038. PMID 35210415 DOI: 10.1038/s41467-022-28678-x  0.118
2021 Coşkun M, Baggag A, Koyutürk M. Fast computation of Katz index for efficient processing of link prediction queries Data Mining and Knowledge Discovery. 35: 1342-1368. DOI: 10.1007/S10618-021-00754-8  0.117
2016 Niazi MK, Yao K, Zynger D, Clinton S, Chen J, Koyuturk M, LaFramboise T, Gurcan M. Visually Meaningful Histopathological Features for Automatic Grading of Prostate Cancer. Ieee Journal of Biomedical and Health Informatics. PMID 27214921 DOI: 10.1109/JBHI.2016.2565515  0.114
2015 Ruffalo M, Husseinzadeh H, Makishima H, Przychodzen B, Ashkar M, Koyutürk M, Maciejewski JP, LaFramboise T. Whole-exome sequencing enhances prognostic classification of myeloid malignancies. Journal of Biomedical Informatics. PMID 26453823 DOI: 10.1016/j.jbi.2015.10.003  0.114
2023 Oğuztüzün Ç, Koyutürk M, Karakurt G. Characterizing Disparities in the Treatment of Intimate Partner Violence. Amia Joint Summits On Translational Science Proceedings. Amia Joint Summits On Translational Science. 2023: 408-417. PMID 37350922  0.113
2023 Gao K, Kaye NM, Ayati M, Koyuturk M, Calabrese JR, Christian E, Lazarus HM, Kaplan D. Divergent Directionality of Immune Cell-Specific Protein Expression between Bipolar Lithium Responders and Non-Responders Revealed by Enhanced Flow Cytometry. Medicina (Kaunas, Lithuania). 59. PMID 36676744 DOI: 10.3390/medicina59010120  0.11
2020 Woerner J, Huang Y, Huang Y, Wang J, Hernández-Sánchez JM, Maciejewski JP, Koyuturk M, Hutter S, Haferlach T, Laframboise T. Characterization of the Blood and Bone Marrow Microbiome of MDS Patients and Associations with Clinical Features Blood. 136: 34-35. DOI: 10.1182/blood-2020-141405  0.106
2008 Altiok N, Mezzadra H, Patel P, Koyuturk M, Altiok S. A plant oxylipin, 12-oxo-phytodienoic acid, inhibits proliferation of human breast cancer cells by targeting cyclin D1 Breast Cancer Research and Treatment. 109: 315-323. PMID 17638069 DOI: 10.1007/s10549-007-9658-9  0.094
2021 Hacıaliefendioğlu A, Yılmaz S, Koyutürk M, Karakurt G. Co-occurrence Patterns of Intimate Partner Violence. Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 26: 79-90. PMID 33691006  0.091
2007 Koyuturk M, Ersoz M, Altiok N. Simvastatin induces apoptosis in human breast cancer cells: p53 and estrogen receptor independent pathway requiring signalling through JNK Cancer Letters. 250: 220-228. PMID 17125918 DOI: 10.1016/j.canlet.2006.10.009  0.089
2016 Karakurt G, Patel V, Whiting K, Koyutürk M. Mining Electronic Health Records Data: Domestic Violence and Adverse Health Effects Journal of Family Violence. 1-9. DOI: 10.1007/s10896-016-9872-5  0.087
2011 Altiok N, Ersoz M, Koyuturk M. Estradiol induces JNK-dependent apoptosis in glioblastoma cells Oncology Letters. 2: 1281-1285. DOI: 10.3892/ol.2011.385  0.086
2023 Karakurt G, Yılmaz S, Kumari M, Gao K, Koyutürk M. Comprehensive Analysis of Electronic Health Records to Characterize The Association Between Intimate Partner Violence and Mental Health. Amia Joint Summits On Translational Science Proceedings. Amia Joint Summits On Translational Science. 2023: 310-319. PMID 37351795  0.078
2023 Oğuztüzün Ç, Koyutürk M, Karakurt G. Systematic Investigation of Meta-Analysis Data on Treatment Effectiveness for Physical, Psychological, and Sexual Intimate Partner Violence Perpetration. Intervencion Psicosocial. 32: 59-68. PMID 37383644 DOI: 10.5093/pi2023a6  0.076
2022 Gao K, Ayati M, Koyuturk M, Calabrese JR, Ganocy SJ, Kaye NM, Lazarus HM, Christian E, Kaplan D. Protein Biomarkers in Monocytes and CD4 Lymphocytes for Predicting Lithium Treatment Response of Bipolar Disorder: a Feasibility Study with Tyramine-Based Signal-Amplified Flow Cytometry. Psychopharmacology Bulletin. 52: 8-35. PMID 35342205  0.072
2007 Altiok N, Koyuturk M, Altiok S. JNK pathway regulates estradiol-induced apoptosis in hormone-dependent human breast cancer cells Breast Cancer Research and Treatment. 105: 247-254. PMID 17187235 DOI: 10.1007/s10549-006-9451-1  0.071
2004 Koyuturk M, Ersoz M, Altiok N. Simvastatin induces proliferation inhibition and apoptosis in C6 glioma cells via c-jun N-terminal kinase Neuroscience Letters. 370: 212-217. PMID 15488325 DOI: 10.1016/j.neulet.2004.08.020  0.07
2023 Gao K, Ayati M, Kaye NM, Koyuturk M, Calabrese JR, Ganocy SJ, Lazarus HM, Christian E, Kaplan D. Differences in intracellular protein levels in monocytes and CD4 lymphocytes between bipolar depressed patients and healthy controls: A pilot study with tyramine-based signal-amplified flow cytometry. Journal of Affective Disorders. 328: 116-127. PMID 36806598 DOI: 10.1016/j.jad.2023.02.058  0.069
2006 Altiok N, Ersoz M, Karpuz V, Koyuturk M. Ginkgo biloba extract regulates differentially the cell death induced by hydrogen peroxide and simvastatin Neurotoxicology. 27: 158-163. PMID 16185767 DOI: 10.1016/j.neuro.2005.08.004  0.067
2014 Koyutürk M, Grama A, Subramaniam S. Preface Functional Coherence of Molecular Networks in Bioinformatics. v-vi. DOI: 10.1007/978-1-4614-0320-3  0.061
2007 Karpuz V, Gokturk A, Koyuturk M. The effects of sperm morphology and motility on the outcome of intracytoplasmic sperm injection Marmara Medical Journal. 20: 92-97.  0.059
2023 Yılmaz S, Gunay E, Lee DH, Whiting K, Silver K, Koyuturk M, Karakurt G. Adverse health correlates of intimate partner violence against older women: Mining electronic health records. Plos One. 18: e0281863. PMID 36888574 DOI: 10.1371/journal.pone.0281863  0.056
2011 Bebek G, Koyutürk M, Chance MR, Price ND. Integrative-omics for translational science-session introduction Pacific Symposium On Biocomputing 2011, Psb 2011. 1-3.  0.049
2020 Yılmaz S, Alghamdi B, Singuri S, Hacialiefendioglu AM, Özcan T, Koyutürk M, Karakurt G. Identifying health correlates of intimate partner violence against pregnant women. Health Information Science and Systems. 8: 36. PMID 33088491 DOI: 10.1007/s13755-020-00124-6  0.046
2007 Koyuturk M, Ozsoy-Sacan O, Yanardag R, Bolkent S. Effects of parsley (Petroselinum crispum) extract and glibornuride on the kidney of streptozotocin-induced diabetic rats Asian Journal of Chemistry. 19: 3894-3902.  0.04
2007 Bolkent S, Koyuturk M, Bulan OK, Tunali S, Yanardag R, Tabakoglu AO. The effects of combined α-tocopherol, ascorbic acid, and selenium against cadmium toxicity in rat intestine Journal of Environmental Pathology, Toxicology and Oncology. 26: 21-27. PMID 17725527  0.036
2006 Koyuturk M, Yanardag R, Bolkent S, Tunali S. Influence of combined antioxidants against cadmium induced testicular damage Environmental Toxicology and Pharmacology. 21: 235-240. DOI: 10.1016/j.etap.2005.08.006  0.035
2020 Liu LY, Bush WS, Koyutürk M, Karakurt G. Interplay between traumatic brain injury and intimate partner violence: data driven analysis utilizing electronic health records. Bmc Women's Health. 20: 269. PMID 33287806 DOI: 10.1186/s12905-020-01104-4  0.035
2009 Ozel L, Ozel MS, Toros AB, Kara M, Ozkan KS, Tellioglu G, Krand O, Koyuturk M, Berber I. Effect of early preoperative 5-fluorouracil on the integrity of colonic anastomoses in rats. World Journal of Gastroenterology. 15: 4156-62. PMID 19725150 DOI: 10.3748/wjg.15.4156  0.033
2005 Koyuturk M, Ozsoy-Sacan O, Bolkent S, Yanardag R. Effect of glurenorm on immunohistochemical changes in pancreatic β cells of rats in experimental diabetes Indian Journal of Experimental Biology. 43: 268-271. PMID 15816415  0.032
2007 Koyuturk M, Yanardag R, Bolkent S, Tunali S. The potential role of combined anti-oxidants against cadmium toxicity on liver of rats Toxicology and Industrial Health. 23: 393-401. PMID 18536491 DOI: 10.1177/0748233707081907  0.032
2005 Koyuturk M, Tunali S, Bolkent S, Yanardag R. Effects of vanadyl sulfate on liver of streptozotocin-induced diabetic rats Biological Trace Element Research. 104: 233-247. PMID 15930593 DOI: 10.1385/BTER:104:3:233  0.029
2004 Ozdil S, Yanardag R, Koyuturk M, Bolkent S, Arbak S. Protective effects of ascorbic acid, DL-α-tocopherol acetate, and sodium selenate on ethanol-induced gastric mucosal injury of rats Biological Trace Element Research. 99: 173-189. PMID 15235151 DOI: 10.1385/BTER:99:1-3:173  0.022
2015 Koyuturk M, Sacan O, Karabulut S, Turk N, Bolkent S, Yanardag R. The role of ghrelin on apoptosis, cell proliferation and oxidant-antioxidant system in the liver of neonatal diabetic rats Cell Biology International. 39: 834-841. DOI: 10.1002/cbin.10464  0.021
2005 Yilmaz S, Koyuturk M, Kilic G, Alpak O, Aytoz A. Effects of leucocytospermia on semen parameters and outcomes of intracytoplasmic sperm injection. International Journal of Andrology. 28: 337-42. PMID 16300665 DOI: 10.1111/j.1365-2605.2005.00562.x  0.014
2004 Koyuturk M, Bolkent S, Ozdil S, Arbak S, Yanardag R. The protective effect of vitamin C, vitamin E and selenium combination therapy on ethanol-induced duodenal mucosal injury Human and Experimental Toxicology. 23: 391-398. PMID 15346720 DOI: 10.1191/0960327104ht468oa  0.012
2011 Bebek G, Chance M, Koyuturk M, Price ND, De La Vega FM, Bustamante CD, Leal SM, Foster J, Moore J, Bernauer J, Flores S, Huang X, Shin S, Zhou R, Alkan C, et al. Pacific symposium on biocomputing 2011 Pacific Symposium On Biocomputing 2011, Psb 2011. v.  0.01
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