Songjian Lu, Ph.D. - Publications

Affiliations: 
2009 Texas A & M University, College Station, TX, United States 
Area:
Computer Science, Bioinformatics Biology

45 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Xue Y, Cooper G, Cai C, Lu S, Hu B, Ma X, Lu X. Tumour-specific Causal Inference Discovers Distinct Disease Mechanisms Underlying Cancer Subtypes. Scientific Reports. 9: 13225. PMID 31519988 DOI: 10.1038/s41598-019-48318-7  0.4
2019 Cai C, Cooper GF, Lu KN, Ma X, Xu S, Zhao Z, Chen X, Xue Y, Lee AV, Clark N, Chen V, Lu S, Chen L, Yu L, Hochheiser HS, et al. Systematic discovery of the functional impact of somatic genome alterations in individual tumors through tumor-specific causal inference. Plos Computational Biology. 15: e1007088. PMID 31276486 DOI: 10.1371/journal.pcbi.1007088  0.4
2019 Liang L, Chen V, Zhu K, Fan X, Lu X, Lu S. Integrating data and knowledge to identify functional modules of genes: a multilayer approach. Bmc Bioinformatics. 20: 225. PMID 31046665 DOI: 10.1186/s12859-019-2800-y  0.4
2019 Minata M, Audia A, Shi J, Lu S, Bernstock J, Pavlyukov MS, Das A, Kim SH, Shin YJ, Lee Y, Koo H, Snigdha K, Waghmare I, Guo X, Mohyeldin A, et al. Phenotypic Plasticity of Invasive Edge Glioma Stem-like Cells in Response to Ionizing Radiation. Cell Reports. 26: 1893-1905.e7. PMID 30759398 DOI: 10.1016/j.celrep.2019.01.076  0.4
2019 Wang X, O'Brien ME, Yu J, Fu L, Zhang Q, Lu S, An X, McDyer JF, Mallampalli RK. Prolonged Cold-Ischemia Induces Necroptotic Cell Death in Ischemia Reperfusion Injury and Contributes to Primary Graft Dysfunction After Lung Transplantation. American Journal of Respiratory Cell and Molecular Biology. PMID 30742487 DOI: 10.1165/rcmb.2018-0207OC  0.36
2018 Lu S, Fan X, Chen L, Lu X. A novel method of using Deep Belief Networks and genetic perturbation data to search for yeast signaling pathways. Plos One. 13: e0203871. PMID 30208101 DOI: 10.1371/journal.pone.0203871  0.4
2018 Pangeni RP, Zhang Z, Alvarez AA, Wan X, Sastry N, Lu S, Shi T, Huang T, Lei CX, James CD, Kessler JA, Brennan CW, Nakano I, Lu X, Hu B, et al. Genome-wide methylomic and transcriptomic analyses identify subtype-specific epigenetic signatures commonly dysregulated in glioma stem cells and glioblastoma. Epigenetics. PMID 29927689 DOI: 10.1080/15592294.2018.1469892  0.4
2018 Sadahiro H, Kang KD, Gibson JT, Minata M, Yu H, Shi J, Chhipa RR, Chen Z, Lu S, Simoni Y, Furuta T, Sabit H, Zhang S, Bastola S, Yamaguchi S, et al. Activation of the receptor tyrosine kinase AXL regulates the immune microenvironment in glioblastoma. Cancer Research. PMID 29531161 DOI: 10.1158/0008-5472.CAN-17-2433  0.4
2017 Huang T, Kim CK, Alvarez AA, Pangeni RP, Wan X, Song X, Shi T, Yang Y, Sastry N, Horbinski CM, Lu S, Stupp R, Kessler JA, Nishikawa R, Nakano I, et al. MST4 Phosphorylation of ATG4B Regulates Autophagic Activity, Tumorigenicity, and Radioresistance in Glioblastoma. Cancer Cell. 32: 840-855.e8. PMID 29232556 DOI: 10.1016/j.ccell.2017.11.005  0.4
2017 Yan G, Chen V, Lu X, Lu S. A signal-based method for finding driver modules of breast cancer metastasis to the lung. Scientific Reports. 7: 10023. PMID 28855549 DOI: 10.1038/s41598-017-09951-2  0.4
2016 Lu S, Cai C, Yan G, Zhou Z, Wan Y, Chen V, Chen L, Cooper GF, Obeid LM, Hannun YA, Lee AV, Lu X. Signal-oriented pathway analyses reveal a signaling complex as a synthetic lethal target for p53 mutations. Cancer Research. PMID 27758891 DOI: 10.1158/0008-5472.CAN-16-1740  0.4
2016 Huang T, Alvarez AA, Pangeni RP, M Horbinski C, Lu S, Kim SH, James CD, J Raizer J, A Kessler J, Brenann CW, Sulman EP, Finocchiaro G, Tan M, Nishikawa R, Lu X, et al. A regulatory circuit of miR-125b/miR-20b and Wnt signalling controls glioblastoma phenotypes through FZD6-modulated pathways. Nature Communications. 7: 12885. PMID 27698350 DOI: 10.1038/ncomms12885  0.4
2016 Chen JM, Ding Y, Lu SY, Pan S, Abudupataer M, Hong T, Wang CS. Noninferiority of Shanghai Cingular biotech's bovine pericardial valve preclinical study in juvenile ovine model. Journal of Thoracic Disease. 8: 1179-87. PMID 27293835 DOI: 10.21037/jtd.2016.04.51  0.44
2016 Chen J, Liu Y, Zhao J, Xu Z, Chen R, Si L, Lu S, Li X, Wang S, Zhang K, Li J, Han J, Xu D. Characterization of Novel Hepatitis B Virus PreS/S-Gene Mutations in a Patient with Occult Hepatitis B Virus Infection. Plos One. 11: e0155654. PMID 27182775 DOI: 10.1371/journal.pone.0155654  0.56
2016 Tsai WS, Chen JS, Shao HJ, Wu JC, Lai JM, Lu SH, Hung TF, Chiu YC, You JF, Hsieh PS, Yeh CY, Hung HY, Chiang SF, Lin GP, Tang R, et al. Circulating Tumor Cell Count Correlates with Colorectal Neoplasm Progression and Is a Prognostic Marker for Distant Metastasis in Non-Metastatic Patients. Scientific Reports. 6: 24517. PMID 27075165 DOI: 10.1038/srep24517  0.4
2016 Chen JY, Tsai WS, Shao HJ, Wu JC, Lai JM, Lu SH, Hung TF, Yang CT, Wu LC, Chen JS, Lee WH, Chang YC. Sensitive and Specific Biomimetic Lipid Coated Microfluidics to Isolate Viable Circulating Tumor Cells and Microemboli for Cancer Detection. Plos One. 11: e0149633. PMID 26938471 DOI: 10.1371/journal.pone.0149633  0.4
2016 Klionsky DJ, Abdelmohsen K, Abe A, Abedin MJ, Abeliovich H, Acevedo Arozena A, Adachi H, Adams CM, Adams PD, Adeli K, Adhihetty PJ, Adler SG, Agam G, Agarwal R, Aghi MK, ... Lu SM, ... Lu S, et al. Guidelines for the use and interpretation of assays for monitoring autophagy (3rd edition). Autophagy. 12: 1-222. PMID 26799652 DOI: 10.1080/15548627.2015.1100356  0.56
2015 Chan PM, Choo BA, Zhang T, Seah MD, Chen JJ, Lu SQ, Tan EY. Mastectomy rates remain high in Singapore and are not associated with poorer survival after adjusting for age. Springerplus. 4: 685. PMID 26576328 DOI: 10.1186/s40064-015-1460-2  0.44
2015 Wu XL, Luo YH, Chen J, Yu B, Liu KL, He JX, Lu SH, Li JX, Wu S, Jiang ZY, Chen XY. Hygrothermal environment may cause influenza pandemics through immune suppression. Human Vaccines & Immunotherapeutics. 0. PMID 26359946 DOI: 10.1080/21645515.2015.1084452  0.44
2015 Lu S, Lu KN, Cheng SY, Hu B, Ma X, Nystrom N, Lu X. Identifying Driver Genomic Alterations in Cancers by Searching Minimum-Weight, Mutually Exclusive Sets. Plos Computational Biology. 11: e1004257. PMID 26317392 DOI: 10.1371/journal.pcbi.1004257  0.4
2015 Guo W, Liu S, Zhu Y, Yu C, Lu S, Yuan M, Gao Y, Huang J, Yuan Z, Peng J, Wang A, Wang Y, Chen J, Zhang L, Sui X, et al. Advances and Prospects in Tissue-Engineered Meniscal Scaffolds for Meniscus Regeneration. Stem Cells International. 2015: 517520. PMID 26199629 DOI: 10.1155/2015/517520  0.56
2015 Lu S, Yu QM, Yin X, Chen J, Jin J. Overexpression of musashi2 is possibly associated with chemoresistance in T-cell acute lymphoblastic leukemia. Leukemia & Lymphoma. 1-9. PMID 26148874 DOI: 10.3109/10428194.2015.1055478  0.36
2015 Zhang M, Cui F, Lu S, Lu H, Xue Y, Wang J, Chen J, Zhao S, Ma S, Zhang Y, Yu Y, Peng Z, Tang H. Developmental pluripotency-associated 4: a novel predictor for prognosis and a potential therapeutic target for colon cancer. Journal of Experimental & Clinical Cancer Research : Cr. 34: 60. PMID 26063247 DOI: 10.1186/s13046-015-0176-z  0.44
2015 Li TM, Liu W, Lu S, Zhang YP, Jia LM, Chen J, Li X, Lei X, Dong MQ. No Significant Increase in the Δ4- and Δ7-Dafachronic Acid Concentration in the Long-Lived glp-1 Mutant and in Dauer Formation-Defective Mutants. G3 (Bethesda, Md.). PMID 25971936 DOI: 10.1534/g3.115.018812  0.44
2015 Wang Y, Zheng YZ, Lu S, Tao X, Che Y, Chen JF. Visible-light-responsive TiO2-coated ZnO:I nanorod array films with enhanced photoelectrochemical and photocatalytic performance. Acs Applied Materials & Interfaces. 7: 6093-101. PMID 25742121 DOI: 10.1021/acsami.5b00980  0.56
2015 Chen J, Ren J, Jing Q, Lu S, Zhang Y, Liu Y, Yu C, Gao P, Zong C, Li X, Wang X. TSH/TSHR Signaling Suppresses Fatty Acid Synthase (FASN) Expression in Adipocytes. Journal of Cellular Physiology. 230: 2233-9. PMID 25655684 DOI: 10.1002/jcp.24952  0.56
2015 Lu S, Xu Y, Mu Q, Cao L, Chen J, Zhu Z, Lou Y, Meng H, Qian W, Tong H, Mai W, Huang J, Yu W, Zhao X, Jin J. The risk of hepatitis B virus reactivation and the role of antiviral prophylaxis in hepatitis B surface antigen negative/hepatitis B core antibody positive patients with diffuse large B-cell lymphoma receiving rituximab-based chemotherapy. Leukemia & Lymphoma. 56: 1027-32. PMID 25065698 DOI: 10.3109/10428194.2014.947606  0.36
2014 Tian B, Lu S, Zhang H, Wang F, Chen J, Zhai J, Su L. Surgical cooperation during implantation of a Boston type-I keratoprosthesis. Eye Science. 29: 233-6. PMID 26016077  0.44
2014 Gao Y, Zhao S, Wang P, Lu S, Li X, Chen J. [Effect of dentin proteoglycans on the bonding properties of dentin]. Zhonghua Kou Qiang Yi Xue Za Zhi = Zhonghua Kouqiang Yixue Zazhi = Chinese Journal of Stomatology. 49: 753-7. PMID 25619297  0.56
2014 Wang AY, Tian Y, Yuan M, Zhang L, Chen JF, Xu WJ, Meng HY, Yu XM, Wang YQ, Guo QY, Lu SB, Peng J, Wang Y. Effect of cervus and cucumis peptides on osteoblast activity and fracture healing in osteoporotic bone. Evidence-Based Complementary and Alternative Medicine : Ecam. 2014: 958908. PMID 25525453 DOI: 10.1155/2014/958908  0.44
2014 Ma QL, Wang JH, Wang YG, Hu C, Mu QT, Yu MX, Wang L, Wang DM, Yang M, Yin XF, Chen FF, Lu SS, Chen J, Zhu ZJ, Chen SJ, et al. High IDH1 expression is associated with a poor prognosis in cytogenetically normal acute myeloid leukemia. International Journal of Cancer. Journal International Du Cancer. PMID 25523507 DOI: 10.1002/ijc.29395  0.36
2014 Zhong JH, Li H, Xiao N, Ye XP, Ke Y, Wang YY, Ma L, Chen J, You XM, Zhang ZY, Lu SD, Li LQ. Hepatic resection is safe and effective for patients with hepatocellular carcinoma and portal hypertension. Plos One. 9: e108755. PMID 25268959 DOI: 10.1371/journal.pone.0108755  0.36
2014 Chen JH, Liu Y, Niu LN, Lu S, Tay FR, Gao Y. A feasible method to eliminate nanoleakage in dentin hybrid layers. The Journal of Adhesive Dentistry. 16: 429-34. PMID 25264547 DOI: 10.3290/j.jad.a32807  0.56
2014 Zhang M, Cui F, Lu S, Lu H, Jiang T, Chen J, Zhang X, Jin Y, Peng Z, Tang H. Increased expression of prothymosin-α, independently or combined with TP53, correlates with poor prognosis in colorectal cancer. International Journal of Clinical and Experimental Pathology. 7: 4867-76. PMID 25197357  0.44
2014 Mu Q, Ma Q, Lu S, Zhang T, Yu M, Huang X, Chen J, Jin J. 10058-F4, a c-Myc inhibitor, markedly increases valproic acid-induced cell death in Jurkat and CCRF-CEM T-lymphoblastic leukemia cells. Oncology Letters. 8: 1355-1359. PMID 25120723 DOI: 10.3892/ol.2014.2277  0.44
2014 Yan TH, Lu SW, Huang YQ, Que GB, Chen JH, Chen YP, Zhang HB, Liang XL, Jiang JH. Upregulation of the long noncoding RNA HOTAIR predicts recurrence in stage Ta/T1 bladder cancer. Tumour Biology : the Journal of the International Society For Oncodevelopmental Biology and Medicine. 35: 10249-57. PMID 25030736 DOI: 10.1007/s13277-014-2344-8  0.56
2014 Hedley AJ, McGhee SM, Fielding R, Repace JL, Wong CM, Lu SQ, Ho AL, Lai HK, Wong LC, Chen J. Health of catering workers in Hong Kong: impact of the 2006 tobacco control legislation. Hong Kong Medical Journal = Xianggang Yi Xue Za Zhi / Hong Kong Academy of Medicine. 20: 42-6. PMID 25001036  0.44
2014 Gao Y, Liu S, Huang J, Guo W, Chen J, Zhang L, Zhao B, Peng J, Wang A, Wang Y, Xu W, Lu S, Yuan M, Guo Q. The ECM-cell interaction of cartilage extracellular matrix on chondrocytes. Biomed Research International. 2014: 648459. PMID 24959581 DOI: 10.1155/2014/648459  0.56
2014 Lu S, Zhao SJ, Gao Y, Sun Y, Li X, Chen JH. Proteoglycans affect monomer infiltration in the etch-and-rinse bonding technique. Dental Materials : Official Publication of the Academy of Dental Materials. 30: e289-99. PMID 24938922 DOI: 10.1016/j.dental.2014.05.015  0.56
2013 Montefusco DJ, Chen L, Matmati N, Lu S, Newcomb B, Cooper GF, Hannun YA, Lu X. Distinct signaling roles of ceramide species in yeast revealed through systematic perturbation and systems biology analyses. Science Signaling. 6: rs14. PMID 24170935 DOI: 10.1126/scisignal.2004515  0.4
2013 Lu S, Jin B, Cowart LA, Lu X. From data towards knowledge: revealing the architecture of signaling systems by unifying knowledge mining and data mining of systematic perturbation data. Plos One. 8: e61134. PMID 23637789 DOI: 10.1371/journal.pone.0061134  0.4
2013 Lu S, Lu X. Using graph models to find transcription factor modules: the hitting set problem and an exact algorithm. Algorithms For Molecular Biology : Amb. 8: 2. PMID 23324335 DOI: 10.1186/1748-7188-8-2  0.4
2012 Lu S, Lu X. Integrating genome and functional genomics data to reveal perturbed signaling pathways in ovarian cancers. Amia Joint Summits On Translational Science Proceedings Amia Summit On Translational Science. 2012: 72-8. PMID 22779056  0.4
2011 Feng H, Hu B, Liu KW, Li Y, Lu X, Cheng T, Yiin JJ, Lu S, Keezer S, Fenton T, Furnari FB, Hamilton RL, Vuori K, Sarkaria JN, Nagane M, et al. Activation of Rac1 by Src-dependent phosphorylation of Dock180(Y1811) mediates PDGFRα-stimulated glioma tumorigenesis in mice and humans. The Journal of Clinical Investigation. 121: 4670-84. PMID 22080864 DOI: 10.1172/JCI58559  0.4
2002 Lu Sb. The position and application of nanotechnology in the development of life science Zhongguo Yi Xue Ke Xue Yuan Xue Bao. Acta Academiae Medicinae Sinicae. 24: 111-113. PMID 12905784  0.44
Show low-probability matches.