Tao Ju, Ph.D. - Publications

Affiliations: 
2005 Rice University, Houston, TX 
Area:
Computer Science, Neuroscience Biology

55 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any innacuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2016 Huang Z, Ju T. Extrinsically smooth direction fields Computers and Graphics (Pergamon). 58: 109-117. DOI: 10.1016/j.cag.2016.05.015  1
2016 Holloway M, Grimm C, Ju T. Template-based surface reconstruction from cross-sections Computers and Graphics (Pergamon). 58: 84-91. DOI: 10.1016/j.cag.2016.05.012  1
2015 Holloway M, Ju T, Grimm C. Contour guided surface deformation for volumetric segmentation Acm Siggraph 2015 Posters, Siggraph 2015. DOI: 10.1145/2787626.2792638  1
2014 Cao YP, Ju T, Fu Z, Hu SM. Interactive Image-Guided Modeling of Extruded Shapes Computer Graphics Forum. 33: 101-110. DOI: 10.1111/cgf.12478  1
2014 Ju T, Bao H. Preface Graphical Models. 76: 115. DOI: 10.1016/j.gmod.2014.02.001  1
2013 Gutekunst DJ, Liu L, Ju T, Prior FW, Sinacore DR. Reliability of clinically relevant 3D foot bone angles from quantitative computed tomography. Journal of Foot and Ankle Research. 6: 38. PMID 24044376 DOI: 10.1186/1757-1146-6-38  1
2013 Zhuang Y, Zou M, Carr N, Ju T. A general and efficient method for finding cycles in 3D curve networks Acm Transactions On Graphics. 32. DOI: 10.1145/2508363.2508423  1
2013 Li XY, Ju T, Hu SM. Cubic mean value coordinates Acm Transactions On Graphics. 32. DOI: 10.1145/2461912.2461917  1
2013 Zou M, Ju T, Carr N. An algorithm for triangulating multiple 3D polygons Computer Graphics Forum. 32: 157-166. DOI: 10.1111/cgf.12182  1
2013 Feng W, Huang J, Ju T, Bao H. Feature correspondences using Morse Smale complex User Modeling and User-Adapted Interaction. 29: 53-67. DOI: 10.1007/s00371-012-0674-3  1
2012 Le YH, Kurkure U, Paragios N, Ju T, Carson JP, Kakadiaris IA. Similarity-based appearance-prior for fitting a subdivision mesh in gene expression images. Medical Image Computing and Computer-Assisted Intervention : Miccai ... International Conference On Medical Image Computing and Computer-Assisted Intervention. 15: 577-84. PMID 23285598  1
2012 Baker ML, Baker MR, Hryc CF, Ju T, Chiu W. Gorgon and pathwalking: macromolecular modeling tools for subnanometer resolution density maps. Biopolymers. 97: 655-68. PMID 22696403 DOI: 10.1002/bip.22065  1
2011 Kurkure U, Le YH, Paragios N, Ju T, Carson JP, Kakadiaris IA. Markov Random Field-based Fitting of a Subdivision-based Geometric Atlas. Proceedings / Ieee International Conference On Computer Vision. Ieee International Conference On Computer Vision. 2011: 2540-2547. PMID 26561477 DOI: 10.1109/ICCV.2011.6126541  1
2011 Kurkure U, Le YH, Paragios N, Carson JP, Ju T, Kakadiaris IA. Landmark/Image-based Deformable Registration of Gene Expression Data. Proceedings / Cvpr, Ieee Computer Society Conference On Computer Vision and Pattern Recognition. Ieee Computer Society Conference On Computer Vision and Pattern Recognition. 1089-1096. PMID 22388864 DOI: 10.1109/CVPR.2011.5995708  1
2011 Enlow MA, Ju T, Kakadiaris IA, Carson JP. Lossless 3-D reconstruction and registration of semi-quantitative gene expression data in the mouse brain. Conference Proceedings : ... Annual International Conference of the Ieee Engineering in Medicine and Biology Society. Ieee Engineering in Medicine and Biology Society. Annual Conference. 2011: 8086-9. PMID 22256218 DOI: 10.1109/IEMBS.2011.6091994  1
2011 Commean PK, Kennedy JA, Bahow KA, Hildebolt CF, Liu L, Smith KE, Hastings MK, Ju T, Prior FW, Sinacore DR. Volumetric quantitative computed tomography measurement precision for volumes and densities of tarsal and metatarsal bones. Journal of Clinical Densitometry : the Official Journal of the International Society For Clinical Densitometry. 14: 313-20. PMID 21723764 DOI: 10.1016/j.jocd.2011.05.006  1
2011 Feng P, Ju T, Warren J. View-independent Contour Culling of 3D Density Maps for Far-field Viewing of Iso-surfaces. Computers & Graphics. 35: 561-568. PMID 21673830 DOI: 10.1016/j.cag.2011.03.035  1
2011 Baker ML, Abeysinghe SS, Schuh S, Coleman RA, Abrams A, Marsh MP, Hryc CF, Ruths T, Chiu W, Ju T. Modeling protein structure at near atomic resolutions with Gorgon. Journal of Structural Biology. 174: 360-73. PMID 21296162 DOI: 10.1016/j.jsb.2011.01.015  1
2011 Li XY, Ju T, Gu Y, Hu SM. A geometric study of v-style pop-ups: Theories and algorithms Acm Transactions On Graphics. 30. DOI: 10.1145/1964921.1964993  1
2011 Wang ZR, Ju T, Cui DW, Hei XH. A study of hybrid parallel genetic algorithm model Proceedings - 2011 7th International Conference On Natural Computation, Icnc 2011. 2: 1038-1042. DOI: 10.1109/ICNC.2011.6022186  1
2011 Liu L, Chambers EW, Letscher D, Ju T. Extended grassfire transform on medial axes of 2D shapes Cad Computer Aided Design. 43: 1496-1505. DOI: 10.1016/j.cad.2011.09.002  1
2010 Abeysinghe S, Baker ML, Chiu W, Ju T. Semi-isometric registration of line features for flexible fitting of protein structures. Computer Graphics Forum : Journal of the European Association For Computer Graphics. 29: 2243-2252. PMID 21124809 DOI: 10.1111/j.1467-8659.2010.01813.x  1
2010 Carson J, Ju T, Bello M, Thaller C, Warren J, Kakadiaris IA, Chiu W, Eichele G. Automated pipeline for atlas-based annotation of gene expression patterns: application to postnatal day 7 mouse brain. Methods (San Diego, Calif.). 50: 85-95. PMID 19698790 DOI: 10.1016/j.ymeth.2009.08.005  1
2010 Ju T, Carson J, Liu L, Warren J, Bello M, Kakadiaris I. Subdivision meshes for organizing spatial biomedical data. Methods (San Diego, Calif.). 50: 70-6. PMID 19664714 DOI: 10.1016/j.ymeth.2009.07.012  1
2010 Liu L, Chambers EW, Letscher D, Ju T. A simple and robust thinning algorithm on cell complexes Computer Graphics Forum. 29: 2253-2260. DOI: 10.1111/j.1467-8659.2010.01814.x  1
2010 Li Y, Ju T, Hu SM. Instant propagation of sparse edits on images and videos Computer Graphics Forum. 29: 2049-2054. DOI: 10.1111/j.1467-8659.2010.01791.x  1
2010 Feng P, Ju T, Warren J. Piecewise tri-linear contouring for multi-material volumes Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 6130: 43-56. DOI: 10.1007/978-3-642-13411-1_4  1
2009 Commean PK, Ju T, Liu L, Sinacore DR, Hastings MK, Mueller MJ. Tarsal and metatarsal bone mineral density measurement using volumetric quantitative computed tomography. Journal of Digital Imaging. 22: 492-502. PMID 18478296 DOI: 10.1007/s10278-008-9118-z  1
2009 Ju T. Fixing geometric errors on polygonal models: A survey Journal of Computer Science and Technology. 24: 19-29. DOI: 10.1007/s11390-009-9206-7  1
2009 Abeysinghe SS, Ju T. Interactive skeletonization of intensity volumes Visual Computer. 25: 627-635. DOI: 10.1007/s00371-009-0325-5  1
2009 Liu L, Ju T. Defining and computing multi-dimensional skeletons Siggraph 2009: Posters, Siggraph '09 1
2008 Ju T, Simpson T, Deasy JO, Low DA. Geometric interpretation of the gamma dose distribution comparison technique: interpolation-free calculation. Medical Physics. 35: 879-87. PMID 18404924 DOI: 10.1118/1.2836952  1
2008 Abeysinghe S, Ju T, Baker ML, Chiu W. Shape modeling and matching in identifying 3D protein structures Cad Computer Aided Design. 40: 708-720. DOI: 10.1016/j.cad.2008.01.013  1
2007 Ju T, Baker ML, Chiu W. Computing a family of skeletons of volumetric models for shape description. Computer Aided Design. 39: 352-360. PMID 18449328 DOI: 10.1016/j.cad.2007.02.006  1
2007 Bello M, Ju T, Carson J, Warren J, Chiu W, Kakadiaris IA. Learning-based segmentation framework for tissue images containing gene expression data. Ieee Transactions On Medical Imaging. 26: 728-44. PMID 17518066 DOI: 10.1109/TMI.2007.895462  1
2007 Zhou QY, Ju T, Hu SM. Topology repair of solid models using skeletons. Ieee Transactions On Visualization and Computer Graphics. 13: 675-85. PMID 17495328 DOI: 10.1109/TVCG.2007.1015  1
2007 Schaefer S, Ju T, Warren J. Manifold dual contouring. Ieee Transactions On Visualization and Computer Graphics. 13: 610-9. PMID 17356225 DOI: 10.1109/TVCG.2007.1012  1
2007 Baker ML, Ju T, Chiu W. Identification of secondary structure elements in intermediate-resolution density maps. Structure (London, England : 1993). 15: 7-19. PMID 17223528 DOI: 10.1016/j.str.2006.11.008  1
2007 Ju T, Zhou QY, Hu SM. Editing the topology of 3D models by sketching Acm Siggraph 2007 Papers - International Conference On Computer Graphics and Interactive Techniques. DOI: 10.1145/1276377.1276430  1
2007 Goldman R, Alexa M, Gortler S, Ju T. Proceedings - Pacific Conference on Computer Graphics and Applications: Preface Proceedings - Pacific Conference On Computer Graphics and Applications. DOI: 10.1109/PG.2007.50  0.44
2007 Ju T, Liepa P, Warren J. A general geometric construction of coordinates in a convex simplicial polytope Computer Aided Geometric Design. 24: 161-178. DOI: 10.1016/j.cagd.2006.12.001  1
2007 Schaefer S, Ju T, Warren J. A unified, integral construction for coordinates over closed curves Computer Aided Geometric Design. 24: 481-493. DOI: 10.1016/j.cagd.2006.06.005  1
2006 Wong CJ, Rice RL, Baker NA, Ju T, Lohman TM. Probing 3'-ssDNA loop formation in E. coli RecBCD/RecBC-DNA complexes using non-natural DNA: a model for "Chi" recognition complexes. Journal of Molecular Biology. 362: 26-43. PMID 16901504 DOI: 10.1016/j.jmb.2006.07.016  1
2006 Ju T, Warren J, Carson J, Bello M, Kakadiaris I, Chiu W, Thaller C, Eichele G. 3D volume reconstruction of a mouse brain from histological sections using warp filtering. Journal of Neuroscience Methods. 156: 84-100. PMID 16580732 DOI: 10.1016/j.jneumeth.2006.02.020  1
2006 Ju T, Baker ML, Chiu W. Computing a family of skeletons of volumetric models for shape description Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 4077: 235-247.  1
2005 Bello M, Ju T, Warren J, Carson J, Chiu W, Thaller C, Eichele G, Kakadiaris IA. Hybrid segmentation framework for tissue images containing gene expression data. Medical Image Computing and Computer-Assisted Intervention : Miccai ... International Conference On Medical Image Computing and Computer-Assisted Intervention. 8: 254-61. PMID 16685853  1
2005 Carson JP, Ju T, Lu HC, Thaller C, Xu M, Pallas SL, Crair MC, Warren J, Chiu W, Eichele G. A digital atlas to characterize the mouse brain transcriptome. Plos Computational Biology. 1: e41. PMID 16184189 DOI: 10.1371/journal.pcbi.0010041  1
2005 Ju T, Schaefer S, Warren J. Mean value coordinates for closed triangular meshes Acm Transactions On Graphics. 24: 561-566. DOI: 10.1145/1073204.1073229  1
2004 Carson JP, Ju T, Thaller C, Warren J, Bello M, Kakadiaris I, Chiu W, Eichele G. Automated characterization of gene expression patterns with an atlas of the mouse brain. Conference Proceedings : ... Annual International Conference of the Ieee Engineering in Medicine and Biology Society. Ieee Engineering in Medicine and Biology Society. Annual Conference. 4: 2917-20. PMID 17270888 DOI: 10.1109/IEMBS.2004.1403829  1
2004 Ju T. Robust repair of polygonal models Acm Siggraph 2004 Papers, Siggraph 2004. 888-895. DOI: 10.1145/1186562.1015815  1
2004 Ju T, Schaefer S, Goldman R. Recursive turtle programs and iterated affine transformations Computers and Graphics (Pergamon). 28: 991-1004. DOI: 10.1016/j.cag.2004.08.016  1
2004 Goldman R, Schaefer S, Ju T. Turtle geometry in computer graphics and computer-aided design Cad Computer Aided Design. 36: 1471-1482. DOI: 10.1016/j.cad.2003.10.005  1
2004 Ju T, Goldman R. Hodograph turtles Proceedings of the Seventh Iasted International Conference On Computer Graphics and Imaging. 39-47.  1
2003 Ju T, Warren J, Eichele G, Thaller C, Chiu W, Carson J. A geometric database for gene expression data. Symposium On Geometry Processing : [Proceedings] / Sponsored by the Eurographics Association in Cooperation With Acm Siggraph. Symposium On Geometry Processing. 2003: 166-176. PMID 20631855  1
2003 Ju T, Schaefer S, Warren J. Convex contouring of volumetric data Visual Computer. 19: 513-525.  1
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