Purvesh Khatri, Ph.D. - Publications

Affiliations: 
2006 Wayne State University, Detroit, MI, United States 
Area:
Computer Science

41 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any innacuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2018 Cheung P, Vallania F, Dvorak M, Chang SE, Schaffert S, Donato M, Rao A, Mao R, Utz PJ, Khatri P, Kuo AJ. Single-cell epigenetics - Chromatin modification atlas unveiled by mass cytometry. Clinical Immunology (Orlando, Fla.). PMID 29960011 DOI: 10.1016/j.clim.2018.06.009  0.36
2016 Sweeney TE, Khatri P. Blood transcriptional signatures for tuberculosis diagnosis: a glass half-empty perspective - Authors' reply. The Lancet. Respiratory Medicine. 4: e29. PMID 27304800 DOI: 10.1016/S2213-2600(16)30039-X  0.84
2016 Reynoird N, Mazur PK, Stellfeld T, Flores NM, Lofgren SM, Carlson SM, Brambilla E, Hainaut P, Kaznowska EB, Arrowsmith CH, Khatri P, Stresemann C, Gozani O, Sage J. Coordination of stress signals by the lysine methyltransferase SMYD2 promotes pancreatic cancer. Genes & Development. PMID 26988419 DOI: 10.1101/gad.275529.115  0.84
2016 Sweeney TE, Khatri P. Comprehensive validation of the FAIM3: PLAC8 ratio in time-matched public gene expression data American Journal of Respiratory and Critical Care Medicine. 192: 1260-1261.  0.84
2015 Mazur PK, Herner A, Mello SS, Wirth M, Hausmann S, Sánchez-Rivera FJ, Lofgren SM, Kuschma T, Hahn SA, Vangala D, Trajkovic-Arsic M, Gupta A, Heid I, Noël PB, Braren R, ... ... Khatri P, et al. Combined inhibition of BET family proteins and histone deacetylases as a potential epigenetics-based therapy for pancreatic ductal adenocarcinoma. Nature Medicine. PMID 26390243 DOI: 10.1038/nm.3952  0.84
2015 Musen MA, Bean CA, Cheung KH, Dumontier M, Durante KA, Gevaert O, Gonzalez-Beltran A, Khatri P, Kleinstein SH, O'Connor MJ, Pouliot Y, Rocca-Serra P, Sansone SA, Wiser JA. The center for expanded data annotation and retrieval. Journal of the American Medical Informatics Association : Jamia. PMID 26112029 DOI: 10.1093/jamia/ocv048  0.84
2014 Li MD, Burns TC, Morgan AA, Khatri P. Integrated multi-cohort transcriptional meta-analysis of neurodegenerative diseases. Acta Neuropathologica Communications. 2: 93. PMID 25187168 DOI: 10.1186/s40478-014-0093-y  0.84
2014 Mazur PK, Reynoird N, Khatri P, Jansen PW, Wilkinson AW, Liu S, Barbash O, Van Aller GS, Huddleston M, Dhanak D, Tummino PJ, Kruger RG, Garcia BA, Butte AJ, Vermeulen M, et al. SMYD3 links lysine methylation of MAP3K2 to Ras-driven cancer. Nature. 510: 283-7. PMID 24847881 DOI: 10.1038/nature13320  0.84
2014 Chen R, Khatri P, Mazur PK, Polin M, Zheng Y, Vaka D, Hoang CD, Shrager J, Xu Y, Vicent S, Butte AJ, Sweet-Cordero EA. A meta-analysis of lung cancer gene expression identifies PTK7 as a survival gene in lung adenocarcinoma. Cancer Research. 74: 2892-902. PMID 24654231 DOI: 10.1158/0008-5472.CAN-13-2775  0.84
2014 Morgan AA, Achrol AS, Li MD, Khatri PJ, Cheshier SH. Multiplex meta-analysis of medulloblastoma expression studies with external controls. Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 99-109. PMID 24297537  0.84
2013 Khatri P, Roedder S, Kimura N, De Vusser K, Morgan AA, Gong Y, Fischbein MP, Robbins RC, Naesens M, Butte AJ, Sarwal MM. A common rejection module (CRM) for acute rejection across multiple organs identifies novel therapeutics for organ transplantation. The Journal of Experimental Medicine. 210: 2205-21. PMID 24127489 DOI: 10.1084/jem.20122709  0.84
2013 Jahchan NS, Dudley JT, Mazur PK, Flores N, Yang D, Palmerton A, Zmoos AF, Vaka D, Tran KQ, Zhou M, Krasinska K, Riess JW, Neal JW, Khatri P, Park KS, et al. A drug repositioning approach identifies tricyclic antidepressants as inhibitors of small cell lung cancer and other neuroendocrine tumors. Cancer Discovery. 3: 1364-77. PMID 24078773 DOI: 10.1158/2159-8290.CD-13-0183  0.84
2012 Vicent S, Sayles LC, Vaka D, Khatri P, Gevaert O, Chen R, Zheng Y, Gillespie AK, Clarke N, Xu Y, Shrager J, Hoang CD, Plevritis S, Butte AJ, Sweet-Cordero EA. Cross-species functional analysis of cancer-associated fibroblasts identifies a critical role for CLCF1 and IL-6 in non-small cell lung cancer in vivo. Cancer Research. 72: 5744-56. PMID 22962265 DOI: 10.1158/0008-5472.CAN-12-1097  0.84
2012 Khatri P, Sirota M, Butte AJ. Ten years of pathway analysis: current approaches and outstanding challenges. Plos Computational Biology. 8: e1002375. PMID 22383865 DOI: 10.1371/journal.pcbi.1002375  0.84
2012 Sigdel TK, Li L, Tran TQ, Khatri P, Naesens M, Sansanwal P, Dai H, Hsieh SC, Sarwal MM. Non-HLA antibodies to immunogenic epitopes predict the evolution of chronic renal allograft injury. Journal of the American Society of Nephrology : Jasn. 23: 750-63. PMID 22302197 DOI: 10.1681/ASN.2011060596  0.84
2011 Sigdel TK, Woo SH, Dai H, Khatri P, Li L, Myers B, Sarwal MM, Lafayette RA. Profiling of autoantibodies in IgA nephropathy, an integrative antibiomics approach. Clinical Journal of the American Society of Nephrology : Cjasn. 6: 2775-84. PMID 22157707 DOI: 10.2215/CJN.04600511  0.84
2011 Khatri P, Sarwal MM, Butte AJ. Applications of translational bioinformatics in transplantation. Clinical Pharmacology and Therapeutics. 90: 323-7. PMID 21716268 DOI: 10.1038/clpt.2011.120  0.84
2011 Khatri P, Sarwal MM. Functional pathway analysis for understanding immunologic signature of rejection: Current approaches and outstanding challenges Immunologic Signatures of Rejection. 239-256. DOI: 10.1007/978-1-4419-7219-4_16  0.84
2010 Morgan AA, Khatri P, Jones RH, Sarwal MM, Butte AJ. Comparison of multiplex meta analysis techniques for understanding the acute rejection of solid organ transplants. Bmc Bioinformatics. 11: S6. PMID 21044364 DOI: 10.1186/1471-2105-11-S9-S6  0.84
2010 Shen-Orr SS, Tibshirani R, Khatri P, Bodian DL, Staedtler F, Perry NM, Hastie T, Sarwal MM, Davis MM, Butte AJ. Cell type-specific gene expression differences in complex tissues. Nature Methods. 7: 287-9. PMID 20208531 DOI: 10.1038/nmeth.1439  0.84
2010 Done B, Khatri P, Done A, Drăghici S. Predicting novel human gene ontology annotations using semantic analysis. Ieee/Acm Transactions On Computational Biology and Bioinformatics / Ieee, Acm. 7: 91-9. PMID 20150671 DOI: 10.1109/TCBB.2008.29  0.84
2010 Kandasamy K, Mohan SS, Raju R, Keerthikumar S, Kumar GS, Venugopal AK, Telikicherla D, Navarro JD, Mathivanan S, Pecquet C, Gollapudi SK, Tattikota SG, Mohan S, Padhukasahasram H, Subbannayya Y, ... ... Khatri P, et al. NetPath: a public resource of curated signal transduction pathways. Genome Biology. 11: R3. PMID 20067622 DOI: 10.1186/gb-2010-11-1-r3  0.84
2009 Khatri P, Sarwal MM. Using gene arrays in diagnosis of rejection. Current Opinion in Organ Transplantation. 14: 34-9. PMID 19337144 DOI: 10.1097/MOT.0b013e32831e13d0  0.84
2009 Tarca AL, Draghici S, Khatri P, Hassan SS, Mittal P, Kim JS, Kim CJ, Kusanovic JP, Romero R. A novel signaling pathway impact analysis. Bioinformatics (Oxford, England). 25: 75-82. PMID 18990722 DOI: 10.1093/bioinformatics/btn577  0.84
2008 Voichiţa C, Khatri P, Drǎghici S. Identifying uncertainty regions in support vector machines using geometric margin and convex hulls Proceedings of the International Joint Conference On Neural Networks. 3319-3324. DOI: 10.1109/IJCNN.2008.4634269  0.84
2007 Draghici S, Khatri P, Tarca AL, Amin K, Done A, Voichita C, Georgescu C, Romero R. A systems biology approach for pathway level analysis. Genome Research. 17: 1537-45. PMID 17785539 DOI: 10.1101/gr.6202607  0.84
2007 Khatri P, Voichita C, Kattan K, Ansari N, Khatri A, Georgescu C, Tarca AL, Draghici S. Onto-Tools: new additions and improvements in 2006. Nucleic Acids Research. 35: W206-11. PMID 17584796 DOI: 10.1093/nar/gkm327  0.84
2007 Done B, Khatri P, Done A, Draghici S. Semantic analysis of genome annotations using weighting schemes 2007 Ieee Symposium On Computational Intelligence and Bioinformatics and Computational Biology, Cibcb 2007. 212-218.  0.84
2006 Drăghici S, Sellamuthu S, Khatri P. Babel's tower revisited: a universal resource for cross-referencing across annotation databases. Bioinformatics (Oxford, England). 22: 2934-9. PMID 17068090 DOI: 10.1093/bioinformatics/btl372  0.84
2006 Khatri P, Desai V, Tarca AL, Sellamuthu S, Wildman DE, Romero R, Draghici S. New Onto-Tools: Promoter-Express, nsSNPCounter and Onto-Translate. Nucleic Acids Research. 34: W626-31. PMID 16845086 DOI: 10.1093/nar/gkl213  0.84
2006 Draghici S, Khatri P, Eklund AC, Szallasi Z. Reliability and reproducibility issues in DNA microarray measurements. Trends in Genetics : Tig. 22: 101-9. PMID 16380191 DOI: 10.1016/j.tig.2005.12.005  0.84
2005 Khatri P, Drăghici S. Ontological analysis of gene expression data: current tools, limitations, and open problems. Bioinformatics (Oxford, England). 21: 3587-95. PMID 15994189 DOI: 10.1093/bioinformatics/bti565  0.84
2005 Khatri P, Sellamuthu S, Malhotra P, Amin K, Done A, Draghici S. Recent additions and improvements to the Onto-Tools. Nucleic Acids Research. 33: W762-5. PMID 15980579 DOI: 10.1093/nar/gki472  0.84
2005 Khatri P, Done B, Rao A, Done A, Draghici S. A semantic analysis of the annotations of the human genome. Bioinformatics (Oxford, England). 21: 3416-21. PMID 15955782 DOI: 10.1093/bioinformatics/bti538  0.84
2005 Draghici S, Khatri P, Liu Y, Chase KJ, Bode EA, Kulesh DA, Wasieloski LP, Norwood DA, Reifman J. Identification of genomic signatures for the design of assays for the detection and monitoring of anthrax threats. Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 248-59. PMID 15759631  0.84
2004 Khatri P, Bhavsar P, Bawa G, Draghici S. Onto-Tools: an ensemble of web-accessible, ontology-based tools for the functional design and interpretation of high-throughput gene expression experiments. Nucleic Acids Research. 32: W449-56. PMID 15215428 DOI: 10.1093/nar/gkh409  0.84
2003 Draghici S, Khatri P, Bhavsar P, Shah A, Krawetz SA, Tainsky MA. Onto-Tools, the toolkit of the modern biologist: Onto-Express, Onto-Compare, Onto-Design and Onto-Translate. Nucleic Acids Research. 31: 3775-81. PMID 12824416 DOI: 10.1093/nar/gkg624  0.84
2003 Draghici S, Khatri P, Shah A, Tainsky MA. Assessing the functional bias of commercial microarrays using the onto-compare database. Biotechniques. 55-61. PMID 12664686  0.84
2003 Draghici S, Khatri P, Martins RP, Ostermeier GC, Krawetz SA. Global functional profiling of gene expression. Genomics. 81: 98-104. PMID 12620386 DOI: 10.1016/S0888-7543(02)00021-6  0.84
2002 Ostermeier GC, Dix DJ, Miller D, Khatri P, Krawetz SA. Spermatozoal RNA profiles of normal fertile men. Lancet (London, England). 360: 772-7. PMID 12241836 DOI: 10.1016/S0140-6736(02)09899-9  0.84
2002 Khatri P, Draghici S, Ostermeier GC, Krawetz SA. Profiling gene expression using onto-express. Genomics. 79: 266-70. PMID 11829497 DOI: 10.1006/geno.2002.6698  0.84
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