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Mugdha Khaladkar, Ph.D. - Publications

Affiliations: 
2009 New Jersey Institute of Technology, Newark, NJ, United States 
Area:
Computer Science, Bioinformatics Biology
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12/24 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2015 Dueck H, Khaladkar M, Kim TK, Spaethling JM, Francis C, Suresh S, Fisher SA, Seale P, Beck SG, Bartfai T, Kuhn B, Eberwine J, Kim J. Deep sequencing reveals cell-type-specific patterns of single-cell transcriptome variation. Genome Biology. 16: 122. PMID 26056000 DOI: 10.1186/S13059-015-0683-4  0.395
2014 Francis C, Natarajan S, Lee MT, Khaladkar M, Buckley PT, Sul JY, Eberwine J, Kim J. Divergence of RNA localization between rat and mouse neurons reveals the potential for rapid brain evolution. Bmc Genomics. 15: 883. PMID 25301173 DOI: 10.1186/1471-2164-15-883  0.368
2014 Buckley PT, Khaladkar M, Kim J, Eberwine J. Cytoplasmic intron retention, function, splicing, and the sentinel RNA hypothesis. Wiley Interdisciplinary Reviews. Rna. 5: 223-30. PMID 24190870 DOI: 10.1002/Wrna.1203  0.453
2013 Khaladkar M, Buckley PT, Lee MT, Francis C, Eghbal MM, Chuong T, Suresh S, Kuhn B, Eberwine J, Kim J. Subcellular RNA sequencing reveals broad presence of cytoplasmic intron-sequence retaining transcripts in mouse and rat neurons. Plos One. 8: e76194. PMID 24098440 DOI: 10.1371/Journal.Pone.0076194  0.396
2012 Hua L, Wang JT, Ji X, Malhotra A, Khaladkar M, Shapiro BA, Zhang K. A method for discovering common patterns from two RNA secondary structures and its application to structural repeat detection. Journal of Bioinformatics and Computational Biology. 10: 1250001. PMID 22809414 DOI: 10.1142/S0219720012500011  0.424
2011 Khaladkar M, Smyda M, Hannenhalli S. Epigenomic and RNA structural correlates of polyadenylation. Rna Biology. 8: 529-37. PMID 21508683 DOI: 10.4161/Rna.8.3.15194  0.421
2008 Khaladkar M, Patel V, Bellofatto V, Wilusz J, Wang JT. Detecting conserved secondary structures in RNA molecules using constrained structural alignment. Computational Biology and Chemistry. 32: 264-72. PMID 18472302 DOI: 10.1016/J.Compbiolchem.2008.03.013  0.429
2008 Khaladkar M, Liu J, Wen D, Wang JT, Tian B. Mining small RNA structure elements in untranslated regions of human and mouse mRNAs using structure-based alignment. Bmc Genomics. 9: 189. PMID 18439287 DOI: 10.1186/1471-2164-9-189  0.495
2007 Khaladkar M, Bellofatto V, Wang JT, Tian B, Shapiro BA. RADAR: a web server for RNA data analysis and research. Nucleic Acids Research. 35: W300-4. PMID 17517784 DOI: 10.1093/Nar/Gkm253  0.438
2007 Khaladkar M, Bellofatto V, Wang JTL, Patel V, Nakayama MK. Constrained RNA structural alignment: Algorithms and application to motif detection in the untranslated regions of Trypanosoma brucei mRNAs Proceedings of the 7th Ieee International Conference On Bioinformatics and Bioengineering, Bibe. 334-341. DOI: 10.1109/BIBE.2007.4375585  0.384
2007 Khaladkar M, Wang JTL. Detecting conserved RNA secondary structures in viral genomes: The RADAR approach Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 4506: 222-227.  0.347
2006 Khaladkar M, Bellofatto V, Wang JTL, Tian B, Zhang K. RADAR: An interactive web-based toolkit for RNA data analysis and research Proceedings - Sixth Ieee Symposium On Bioinformatics and Bioengineering, Bibe 2006. 209-212. DOI: 10.1109/BIBE.2006.253336  0.367
Low-probability matches (unlikely to be authored by this person)
2015 Feltzin VL, Khaladkar M, Abe M, Parisi M, Hendriks GJ, Kim J, Bonini NM. The exonuclease Nibbler regulates age-associated traits and modulates piRNA length in Drosophila. Aging Cell. 14: 443-52. PMID 25754031 DOI: 10.1111/Acel.12323  0.286
2017 Spaethling JM, Na YJ, Lee J, Ulyanova AV, Baltuch GH, Bell TJ, Brem S, Chen HI, Dueck H, Fisher SA, Garcia MP, Khaladkar M, Kung DK, Lucas TH, O'Rourke DM, et al. Primary Cell Culture of Live Neurosurgically Resected Aged Adult Human Brain Cells and Single Cell Transcriptomics. Cell Reports. 18: 791-803. PMID 28099855 DOI: 10.1016/J.Celrep.2016.12.066  0.286
2020 Han L, Choudhury S, Mich-Basso JD, Ammanamanchi N, Ganapathy B, Suresh S, Khaladkar M, Singh J, Maehr R, Zuppo DA, Kim J, Eberwine JH, Wyman SK, Wu YL, Kühn B. Lamin B2 Levels Regulate Polyploidization of Cardiomyocyte Nuclei and Myocardial Regeneration. Developmental Cell. PMID 32109383 DOI: 10.1016/J.Devcel.2020.01.030  0.249
2012 Khaladkar M, Hannenhalli S. Functional divergence of gene duplicates - a domain-centric view. Bmc Evolutionary Biology. 12: 126. PMID 22839301 DOI: 10.1186/1471-2148-12-126  0.243
2019 Liu H, Zhang CH, Ammanamanchi N, Suresh S, Lewarchik C, Rao K, Uys GM, Han L, Abrial M, Yimlamai D, Ganapathy B, Guillermier C, Chen N, Khaladkar M, Spaethling J, et al. Control of cytokinesis by β-adrenergic receptors indicates an approach for regulating cardiomyocyte endowment. Science Translational Medicine. 11. PMID 31597755 DOI: 10.1126/Scitranslmed.Aaw6419  0.231
2016 Marcora E, Renton AE, Beecham GW, Boerwinkle E, Cantwell L, Cruchaga C, Cweibel R, Felsenfeld A, Fornage M, Kapoor M, Kauwe K, Khaladkar M, Kobolt D, Ma Y, Mayeux R, et al. F1-01-02: Alzheimer's Disease Sequencing Project: Search for Alzheimer's Disease Resilience Genes That May Modify Disease Susceptibility in Specific Apoe Genotype Backgrounds Alzheimer's & Dementia. 12: P162-P163. DOI: 10.1016/J.Jalz.2016.06.272  0.227
2023 Van de Sande B, Lee JS, Mutasa-Gottgens E, Naughton B, Bacon W, Manning J, Wang Y, Pollard J, Mendez M, Hill J, Kumar N, Cao X, Chen X, Khaladkar M, Wen J, et al. Applications of single-cell RNA sequencing in drug discovery and development. Nature Reviews. Drug Discovery. PMID 37117846 DOI: 10.1038/s41573-023-00688-4  0.222
2018 Zhu Q, Fisher SA, Dueck H, Middleton S, Khaladkar M, Kim J. PIVOT: platform for interactive analysis and visualization of transcriptomics data. Bmc Bioinformatics. 19: 6. PMID 29304726 DOI: 10.1186/S12859-017-1994-0  0.217
2016 Gangadharan P, Partch AB, Valladares O, Greenfest-Allen E, Childress DM, Cweibel R, Malamon J, Lin H, Zhao Y, Khaladkar M, Naj AC, Stoeckert CJ, Schellenberg GD, Wang L. P3-093: NIA Genetics of Alzheimer’s Disease Data Storage Site (NIAGADS): 2016 Update Alzheimer's & Dementia. 12: P855-P856. DOI: 10.1016/J.Jalz.2016.06.1752  0.208
2017 Khaladkar M, Koscielny G, Hasan S, Agarwal P, Dunham I, Rajpal D, Sanseau P. Uncovering novel repositioning opportunities using the Open Targets platform. Drug Discovery Today. PMID 28919242 DOI: 10.1016/J.Drudis.2017.09.007  0.1
2014 Godse LS, Karandikar PB, Khaladkar MY. Study of carbon materials and effect of its ball milling, on capacitance of supercapacitor Energy Procedia. 54: 302-309. DOI: 10.1016/j.egypro.2014.07.273  0.029
2015 Khaladkar M, Randhawa S, Singh G, Aditi G, Rajesh K, Rajeshwar S. Rapid magnetic resonance imaging protocol for detecting femoral head avascular necrosis: A case series-it′s utility in the general population in developing countries Medical Journal of Dr. D.Y. Patil University. 8: 189. DOI: 10.4103/0975-2870.153156  0.017
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