James C. Costello, Ph.D. - Publications

2009 Informatics Indiana University, Bloomington, Bloomington, IN, United States 
Bioinformatics Biology, Information Science

23 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2016 Saez-Rodriguez J, Costello JC, Friend SH, Kellen MR, Mangravite L, Meyer P, Norman T, Stolovitzky G. Crowdsourcing biomedical research: leveraging communities as innovation engines. Nature Reviews. Genetics. 17: 470-86. PMID 27418159 DOI: 10.1038/nrg.2016.69  0.52
2015 Cokelaer T, Bansal M, Bare C, Bilal E, Bot BM, Chaibub Neto E, Eduati F, Gönen M, Hill SM, Hoff B, Karr JR, Küffner R, Menden MP, Meyer P, Norel R, ... ... Costello JC, et al. DREAMTools: a Python package for scoring collaborative challenges. F1000research. 4: 1030. PMID 27134723 DOI: 10.12688/f1000research.7118.1  0.52
2015 Goodspeed A, Heiser LM, Gray JW, Costello JC. Tumor-derived Cell Lines as Molecular Models of Cancer Pharmacogenomics. Molecular Cancer Research : McR. PMID 26248648 DOI: 10.1158/1541-7786.MCR-15-0189  0.52
2014 Bansal M, Yang J, Karan C, Menden MP, Costello JC, Tang H, Xiao G, Li Y, Allen J, Zhong R, Chen B, Kim M, Wang T, Heiser LM, Realubit R, et al. A community computational challenge to predict the activity of pairs of compounds. Nature Biotechnology. 32: 1213-22. PMID 25419740 DOI: 10.1038/nbt.3052  0.52
2014 Costello JC, Theodorescu D. Decade in review-bladder cancer: international progress: from cytology to genomics. Nature Reviews. Urology. 11: 609-10. PMID 25179501 DOI: 10.1038/nrurol.2014.236  0.52
2014 Costello JC, Heiser LM, Georgii E, Gönen M, Menden MP, Wang NJ, Bansal M, Ammad-ud-din M, Hintsanen P, Khan SA, Mpindi JP, Kallioniemi O, Honkela A, Aittokallio T, Wennerberg K, et al. A community effort to assess and improve drug sensitivity prediction algorithms. Nature Biotechnology. 32: 1202-12. PMID 24880487 DOI: 10.1038/nbt.2877  0.52
2014 Xue R, Zakharov MN, Xia Y, Bhasin S, Costello JC, Jasuja R. Research resource: EPSLiM: ensemble predictor for short linear motifs in nuclear hormone receptors. Molecular Endocrinology (Baltimore, Md.). 28: 768-77. PMID 24678734 DOI: 10.1210/me.2014-1006  0.52
2014 Jasuja R, Costello JC, Singh R, Gupta V, Spina CS, Toraldo G, Jang H, Li H, Serra C, Guo W, Chauhan P, Narula NS, Guarneri T, Ergun A, Travison TG, et al. Combined administration of testosterone plus an ornithine decarboxylase inhibitor as a selective prostate-sparing anabolic therapy. Aging Cell. 13: 303-10. PMID 24305501 DOI: 10.1111/acel.12174  0.52
2013 Ergun A, Doran G, Costello JC, Paik HH, Collins JJ, Mathis D, Benoist C. Differential splicing across immune system lineages. Proceedings of the National Academy of Sciences of the United States of America. 110: 14324-9. PMID 23934048 DOI: 10.1073/pnas.1311839110  0.52
2013 Kalghatgi S, Spina CS, Costello JC, Liesa M, Morones-Ramirez JR, Slomovic S, Molina A, Shirihai OS, Collins JJ. Bactericidal antibiotics induce mitochondrial dysfunction and oxidative damage in Mammalian cells. Science Translational Medicine. 5: 192ra85. PMID 23825301 DOI: 10.1126/scitranslmed.3006055  0.52
2013 Costello JC, Stolovitzky G. Seeking the wisdom of crowds through challenge-based competitions in biomedical research. Clinical Pharmacology and Therapeutics. 93: 396-8. PMID 23549146 DOI: 10.1038/clpt.2013.36  0.52
2012 Kwong LN, Costello JC, Liu H, Jiang S, Helms TL, Langsdorf AE, Jakubosky D, Genovese G, Muller FL, Jeong JH, Bender RP, Chu GC, Flaherty KT, Wargo JA, Collins JJ, et al. Oncogenic NRAS signaling differentially regulates survival and proliferation in melanoma. Nature Medicine. 18: 1503-10. PMID 22983396 DOI: 10.1038/nm.2941  0.52
2012 Marbach D, Costello JC, Küffner R, Vega NM, Prill RJ, Camacho DM, Allison KR, Kellis M, Collins JJ, Stolovitzky G. Wisdom of crowds for robust gene network inference. Nature Methods. 9: 796-804. PMID 22796662 DOI: 10.1038/nmeth.2016  0.52
2009 Costello JC, Dalkilic MM, Beason SM, Gehlhausen JR, Patwardhan R, Middha S, Eads BD, Andrews JR. Gene networks in Drosophila melanogaster: integrating experimental data to predict gene function. Genome Biology. 10: R97. PMID 19758432 DOI: 10.1186/gb-2009-10-9-r97  0.52
2009 Schrider DR, Costello JC, Hahn MW. All human-specific gene losses are present in the genome as pseudogenes. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 16: 1419-27. PMID 19754271 DOI: 10.1089/cmb.2009.0085  0.52
2009 Costello JC, Schrider D, Gehlhausen J, Dalkilic M. Data-driven ontologies. Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 15-26. PMID 19213131  0.52
2008 Costello J, Cash AC, Dalkilic MM, Andrews J. Data pushing: a fly-centric guide to bioinformatics tools. Fly. 2: 1-18. PMID 18849648  0.52
2008 Li YF, Costello JC, Holloway AK, Hahn MW. "Reverse ecology" and the power of population genomics. Evolution; International Journal of Organic Evolution. 62: 2984-94. PMID 18752601 DOI: 10.1111/j.1558-5646.2008.00486.x  0.52
2008 Dalkilic MM, Costello JC, Clark WT, Radivojac P. From protein-disease associations to disease informatics. Frontiers in Bioscience : a Journal and Virtual Library. 13: 3391-407. PMID 18508441 DOI: 10.2741/2934  0.52
2008 Costello JC, Han MV, Hahn MW. Limitations of pseudogenes in identifying gene losses Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 5267: 14-25. DOI: 10.1007/978-3-540-87989-3_2  0.52
2007 Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, ... ... Costello JC, et al. Evolution of genes and genomes on the Drosophila phylogeny. Nature. 450: 203-18. PMID 17994087 DOI: 10.1038/nature06341  0.52
2007 Costello JC, Buchanan-Carter JE, Dalkilic MM, Andrews J. Using drosophila melanogaster data to discover disease-related protein interactions in humans 2007 Ieee Symposium On Computational Intelligence and Bioinformatics and Computational Biology, Cibcb 2007. 469-475.  0.52
2006 Dalkilic MM, Clark WT, Costello JC, Radivojac P. Using compression to identify classes of inauthentic texts Proceedings of the Sixth Siam International Conference On Data Mining. 2006: 604-608.  0.52
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