James C. Costello, Ph.D. - Publications

Affiliations: 
2009 Informatics Indiana University, Bloomington, Bloomington, IN, United States 
Area:
Bioinformatics Biology, Information Science

18/100 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2016 Saez-Rodriguez J, Costello JC, Friend SH, Kellen MR, Mangravite L, Meyer P, Norman T, Stolovitzky G. Crowdsourcing biomedical research: leveraging communities as innovation engines. Nature Reviews. Genetics. 17: 470-86. PMID 27418159 DOI: 10.1038/Nrg.2016.69  0.52
2015 Cokelaer T, Bansal M, Bare C, Bilal E, Bot BM, Chaibub Neto E, Eduati F, Gönen M, Hill SM, Hoff B, Karr JR, Küffner R, Menden MP, Meyer P, Norel R, ... ... Costello JC, et al. DREAMTools: a Python package for scoring collaborative challenges. F1000research. 4: 1030. PMID 27134723 DOI: 10.12688/F1000Research.7118.2  0.52
2013 Ergun A, Doran G, Costello JC, Paik HH, Collins JJ, Mathis D, Benoist C. Differential splicing across immune system lineages. Proceedings of the National Academy of Sciences of the United States of America. 110: 14324-9. PMID 23934048 DOI: 10.1073/Pnas.1311839110  0.52
2013 Kalghatgi S, Spina CS, Costello JC, Liesa M, Morones-Ramirez JR, Slomovic S, Molina A, Shirihai OS, Collins JJ. Bactericidal antibiotics induce mitochondrial dysfunction and oxidative damage in Mammalian cells. Science Translational Medicine. 5: 192ra85. PMID 23825301 DOI: 10.1126/Scitranslmed.3006055  0.52
2013 Costello JC, Stolovitzky G. Seeking the wisdom of crowds through challenge-based competitions in biomedical research. Clinical Pharmacology and Therapeutics. 93: 396-8. PMID 23549146 DOI: 10.1038/Clpt.2013.36  0.52
2012 Kwong LN, Costello JC, Liu H, Jiang S, Helms TL, Langsdorf AE, Jakubosky D, Genovese G, Muller FL, Jeong JH, Bender RP, Chu GC, Flaherty KT, Wargo JA, Collins JJ, et al. Oncogenic NRAS signaling differentially regulates survival and proliferation in melanoma. Nature Medicine. 18: 1503-10. PMID 22983396 DOI: 10.1038/Nm.2941  0.52
2012 Marbach D, Costello JC, Küffner R, Vega NM, Prill RJ, Camacho DM, Allison KR, Kellis M, Collins JJ, Stolovitzky G. Wisdom of crowds for robust gene network inference. Nature Methods. 9: 796-804. PMID 22796662 DOI: 10.1038/Nmeth.2016  0.52
2009 Kijimoto T, Costello J, Tang Z, Moczek AP, Andrews J. EST and microarray analysis of horn development in Onthophagus beetles. Bmc Genomics. 10: 504. PMID 19878565 DOI: 10.1186/1471-2164-10-504  0.52
2009 Costello JC, Dalkilic MM, Beason SM, Gehlhausen JR, Patwardhan R, Middha S, Eads BD, Andrews JR. Gene networks in Drosophila melanogaster: integrating experimental data to predict gene function. Genome Biology. 10: R97. PMID 19758432 DOI: 10.1186/Gb-2009-10-9-R97  0.52
2009 Schrider DR, Costello JC, Hahn MW. All human-specific gene losses are present in the genome as pseudogenes. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 16: 1419-27. PMID 19754271 DOI: 10.1089/Cmb.2009.0085  0.52
2009 Costello JC, Schrider D, Gehlhausen J, Dalkilic M. Data-driven ontologies. Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 15-26. PMID 19213131  0.52
2008 Costello J, Cash AC, Dalkilic MM, Andrews J. Data pushing: a fly-centric guide to bioinformatics tools. Fly. 2: 1-18. PMID 18849648 DOI: 10.4161/Fly.5864  0.52
2008 Li YF, Costello JC, Holloway AK, Hahn MW. "Reverse ecology" and the power of population genomics. Evolution; International Journal of Organic Evolution. 62: 2984-94. PMID 18752601 DOI: 10.1111/J.1558-5646.2008.00486.X  0.52
2008 Dalkilic MM, Costello JC, Clark WT, Radivojac P. From protein-disease associations to disease informatics. Frontiers in Bioscience : a Journal and Virtual Library. 13: 3391-407. PMID 18508441 DOI: 10.2741/2934  0.52
2008 Costello JC, Han MV, Hahn MW. Limitations of pseudogenes in identifying gene losses Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 5267: 14-25. DOI: 10.1007/978-3-540-87989-3_2  0.52
2007 Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, ... ... Costello JC, et al. Evolution of genes and genomes on the Drosophila phylogeny. Nature. 450: 203-18. PMID 17994087 DOI: 10.1038/Nature06341  0.52
2007 Costello JC, Buchanan-Carter JE, Dalkilic MM, Andrews J. Using drosophila melanogaster data to discover disease-related protein interactions in humans 2007 Ieee Symposium On Computational Intelligence and Bioinformatics and Computational Biology, Cibcb 2007. 469-475.  0.52
2006 Dalkilic MM, Clark WT, Costello JC, Radivojac P. Using compression to identify classes of inauthentic texts Proceedings of the Sixth Siam International Conference On Data Mining. 2006: 604-608.  0.52
Low-probability matches
2021 Mueller AC, Piper M, Goodspeed A, Bhuvane S, Williams JS, Bhatia S, Phan AV, Van Court B, Zolman KL, Peña B, Oweida AJ, Zakem S, Meguid C, Knitz MW, Darragh L, ... ... Costello JC, et al. Induction of ADAM10 by RT drives fibrosis, resistance, and EMT in pancreatic cancer. Cancer Research. PMID 33526513 DOI: 10.1158/0008-5472.CAN-20-3892  0.01
2020 Tu MM, Abdel-Hafiz HA, Jones RT, Jean A, Hoff KJ, Duex JE, Chauca-Diaz A, Costello JC, Dancik GM, Tamburini BAJ, Czerniak B, Kaye J, Theodorescu D. Inhibition of the CCL2 receptor, CCR2, enhances tumor response to immune checkpoint therapy. Communications Biology. 3: 720. PMID 33247183 DOI: 10.1038/s42003-020-01441-y  0.01
2020 Joshi M, Kim J, D'Alessandro A, Monk E, Bruce K, Elajaili H, Nozik-Grayck E, Goodspeed A, Costello JC, Schlaepfer IR. CPT1A Over-Expression Increases Reactive Oxygen Species in the Mitochondria and Promotes Antioxidant Defenses in Prostate Cancer. Cancers. 12. PMID 33218188 DOI: 10.3390/cancers12113431  0.01
2020 McCann TS, Parrish JK, Hsieh J, Sechler M, Sobral LM, Self C, Jones KL, Goodspeed A, Costello JC, Jedlicka P. KDM5A and PHF2 positively control expression of pro-metastatic genes repressed by EWS/Fli1, and promote growth and metastatic properties in Ewing sarcoma. Oncotarget. 11: 3818-3831. PMID 33196691 DOI: 10.18632/oncotarget.27737  0.01
2020 Greene CS, Costello JC. Biologically Informed Neural Networks Predict Drug Responses. Cancer Cell. PMID 33096022 DOI: 10.1016/j.ccell.2020.10.014  0.01
2020 Jordan K, Sikora MJ, Slansky JE, Minic A, Richer JK, Moroney MR, Hu J, Wolsky RJ, Watson ZL, Yamamoto TM, Costello JC, Clauset A, Behbakht K, Kumar TR, Bitler BG. The capacity of the ovarian cancer tumor microenvironment to integrate inflammation signaling conveys a shorter disease-free interval. Clinical Cancer Research : An Official Journal of the American Association For Cancer Research. PMID 32928797 DOI: 10.1158/1078-0432.Ccr-20-1762  0.01
2020 Sobral LM, Hicks HM, Parrish JK, McCann TS, Hsieh J, Goodspeed A, Costello JC, Black JC, Jedlicka P. KDM3A/Ets1 epigenetic axis contributes to PAX3/FOXO1-driven and independent disease-promoting gene expression in fusion-positive Rhabdomyosarcoma. Molecular Oncology. PMID 32697014 DOI: 10.1002/1878-0261.12769  0.01
2020 Stern JL, Paucek RD, Huang FW, Ghandi M, Nwumeh R, Costello JC, Cech TR. Allele-Specific DNA Methylation and Its Interplay with Repressive Histone Marks at Promoter-Mutant TERT Genes. Cell Reports. 31: 107718. PMID 32460014 DOI: 10.1016/j.celrep.2020.107718  0.01
2020 Zhou H, Blevins MA, Hsu JY, Kong D, Galbraith MD, Goodspeed A, Culp-Hill R, Oliphant MU, Ramirez D, Zhang L, Pineiro JT, Mathews Griner L, King R, Barnaeva E, Hu X, ... ... Costello JC, et al. A SIX1/EYA2 small molecule inhibitor disrupts EMT and metastasis. Cancer Research. PMID 32341035 DOI: 10.1158/0008-5472.Can-20-0435  0.01
2020 Stern JL, Hibshman G, Hu K, Ferrara SE, Costello JC, Kim W, Tamayo P, Cech TR, Huang FW. Mesenchymal and MAPK Expression Signatures Associate with Telomerase Promoter Mutations in Multiple Cancers. Molecular Cancer Research : McR. PMID 32276990 DOI: 10.1158/1541-7786.Mcr-19-1244  0.01
2020 Pei S, Pollyea DA, Gustafson A, Stevens BM, Minhajuddin M, Fu R, Riemondy KA, Gillen AE, Sheridan RM, Kim J, Costello JC, Amaya ML, Inguva A, Winters A, Ye H, et al. Monocytic Subclones Confer Resistance to Venetoclax-Based Therapy in Acute Myeloid Leukemia Patients. Cancer Discovery. PMID 31974170 DOI: 10.1158/2159-8290.Cd-19-0710  0.01
2019 Powers RK, Culp-Hill R, Ludwig MP, Smith KP, Waugh KA, Minter R, Tuttle KD, Lewis HC, Rachubinski AL, Granrath RE, Carmona-Iragui M, Wilkerson RB, Kahn DE, Joshi M, Lleó A, ... ... Costello JC, et al. Trisomy 21 activates the kynurenine pathway via increased dosage of interferon receptors. Nature Communications. 10: 4766. PMID 31628327 DOI: 10.1038/S41467-019-12739-9  0.01
2019 Washino S, Rider LC, Romero L, Jillson LK, Affandi T, Ohm AM, Lam ET, Reyland ME, Costello JC, Cramer SD. Loss of MAP3K7 sensitizes prostate cancer cells to CDK1/2 inhibition and DNA damage by disrupting homologous recombination. Molecular Cancer Research : McR. PMID 31300540 DOI: 10.1158/1541-7786.Mcr-18-1335  0.01
2019 Tu MM, Lee FYF, Jones RT, Kimball AK, Saravia E, Graziano RF, Coleman B, Menard K, Yan J, Michaud E, Chang H, Abdel-Hafiz HA, Rozhok AI, Duex JE, Agarwal N, ... ... Costello JC, et al. Targeting DDR2 enhances tumor response to anti-PD-1 immunotherapy. Science Advances. 5: eaav2437. PMID 30801016 DOI: 10.1126/Sciadv.Aav2437  0.01
2019 Oliphant MUJ, Vincent MY, Galbraith MD, Pandey A, Zaberezhnyy V, Rudra P, Johnson KR, Costello JC, Ghosh D, DeGregori J, Espinosa JM, Ford HL. Six2 mediates late-stage metastasis via direct regulation of Sox2 and induction of a cancer stem cell program. Cancer Research. PMID 30606720 DOI: 10.1158/0008-5472.Can-18-1791  0.01
2018 Ross BC, Costello JC. Improved inference of chromosome conformation from images of labeled loci. F1000research. 7. PMID 31363407 DOI: 10.12688/F1000Research.16252.3  0.01
2018 Goodspeed A, Jean A, Costello JC. A Whole-genome CRISPR Screen Identifies a Role of MSH2 in Cisplatin-mediated Cell Death in Muscle-invasive Bladder Cancer. European Urology. PMID 30414698 DOI: 10.1016/J.Eururo.2018.10.040  0.01
2018 Morgan MJ, Fitzwalter BE, Owens CR, Powers RK, Sottnik JL, Gamez G, Costello JC, Theodorescu D, Thorburn A. Metastatic cells are preferentially vulnerable to lysosomal inhibition. Proceedings of the National Academy of Sciences of the United States of America. PMID 30127018 DOI: 10.1073/Pnas.1706526115  0.01
2018 Goodspeed A, Jean A, Theodorescu D, Costello JC. A Gene Expression Signature Predicts Bladder Cancer Cell Line Sensitivity to EGFR Inhibition. Bladder Cancer (Amsterdam, Netherlands). 4: 269-282. PMID 30112438 DOI: 10.3233/BLC-170161  0.01
2018 Powers RK, Goodspeed A, Pielke-Lombardo H, Tan AC, Costello JC. GSEA-InContext: identifying novel and common patterns in expression experiments. Bioinformatics (Oxford, England). 34: i555-i564. PMID 29950010 DOI: 10.1093/bioinformatics/bty271  0.01
2018 Camacho DM, Collins KM, Powers RK, Costello JC, Collins JJ. Next-Generation Machine Learning for Biological Networks. Cell. 173: 1581-1592. PMID 29887378 DOI: 10.1016/J.Cell.2018.05.015  0.01
2018 Ross BC, Boguslav M, Weeks H, Costello JC. Simulating heterogeneous populations using Boolean models. Bmc Systems Biology. 12: 64. PMID 29879983 DOI: 10.1186/S12918-018-0591-9  0.01
2018 Vartuli RL, Zhou H, Zhang L, Powers RK, Klarquist J, Rudra P, Vincent MY, Ghosh D, Costello JC, Kedl RM, Slansky JE, Zhao R, Ford HL. Eya3 promotes breast tumor-associated immune suppression via threonine phosphatase-mediated PD-L1 upregulation. The Journal of Clinical Investigation. PMID 29757193 DOI: 10.1172/Jci96784  0.01
2018 Zuiverloon TCM, de Jong FC, Costello JC, Theodorescu D. Systematic Review: Characteristics and Preclinical Uses of Bladder Cancer Cell Lines. Bladder Cancer (Amsterdam, Netherlands). 4: 169-183. PMID 29732388 DOI: 10.3233/BLC-180167  0.01
2017 Seyednasrollah F, Koestler DC, Wang T, Piccolo SR, Vega R, Greiner R, Fuchs C, Gofer E, Kumar L, Wolfinger RD, Kanigel Winner K, Bare C, Neto EC, Yu T, Shen L, ... ... Costello JC, et al. A DREAM Challenge to Build Prediction Models for Short-Term Discontinuation of Docetaxel in Metastatic Castration-Resistant Prostate Cancer. Jco Clinical Cancer Informatics. 1: 1-15. PMID 30657384 DOI: 10.1200/CCI.17.00018  0.01
2017 Stern JL, Paucek RD, Huang FW, Ghandi M, Nwumeh R, Costello JC, Cech TR. Allele-Specific DNA Methylation and Its Interplay with Repressive Histone Marks at Promoter-Mutant TERT Genes. Cell Reports. 21: 3700-3707. PMID 29281820 DOI: 10.1016/J.Celrep.2017.12.001  0.01
2017 Laajala TD, Guinney J, Costello JC. Community mining of open clinical trial data. Oncotarget. 8: 81721-81722. PMID 29137211 DOI: 10.18632/Oncotarget.20853  0.01
2017 Zhou H, Costello JC. All Paths Lead to TRIM25. Trends in Cancer. 3: 673-675. PMID 28958384 DOI: 10.1016/J.Trecan.2017.08.005  0.01
2016 Kanigel Winner KR, Costello JC. A SPATIOTEMPORAL MODEL TO SIMULATE CHEMOTHERAPY REGIMENS FOR HETEROGENEOUS BLADDER CANCER METASTASES TO THE LUNG. Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 22: 611-622. PMID 27897011  0.01
2016 Guinney J, Wang T, Laajala TD, Winner KK, Bare JC, Neto EC, Khan SA, Peddinti G, Airola A, Pahikkala T, Mirtti T, Yu T, Bot BM, Shen L, Abdallah K, ... ... Costello JC, et al. Prediction of overall survival for patients with metastatic castration-resistant prostate cancer: development of a prognostic model through a crowdsourced challenge with open clinical trial data. The Lancet. Oncology. PMID 27864015 DOI: 10.1016/S1470-2045(16)30560-5  0.01
2016 Andrews FH, Tong Q, Sullivan KD, Cornett EM, Zhang Y, Ali M, Ahn J, Pandey A, Guo AH, Strahl BD, Costello JC, Espinosa JM, Rothbart SB, Kutateladze TG. Multivalent Chromatin Engagement and Inter-domain Crosstalk Regulate MORC3 ATPase. Cell Reports. 16: 3195-207. PMID 27653685 DOI: 10.1016/J.Celrep.2016.08.050  0.01
2016 Agarwal N, Dancik GM, Goodspeed A, Costello JC, Owens C, Duex JE, Theodorescu D. GON4L drives cancer growth through a YY1- androgen receptor-CD24 axis. Cancer Research. PMID 27312530 DOI: 10.1158/0008-5472.Can-16-1099  0.01
2016 Nickerson ML, Witte N, Im KM, Turan S, Owens C, Misner K, Tsang SX, Cai Z, Wu S, Dean M, Costello JC, Theodorescu D. Molecular analysis of urothelial cancer cell lines for modeling tumor biology and drug response. Oncogene. PMID 27270441 DOI: 10.1038/Onc.2016.172  0.01
2016 Zhou FL, Guinney J, Wang T, Bare JC, Norman TC, Bot B, Shen L, Winner KK, Friend SH, Abdallah K, Stolovitzky GA, Xie Y, Costello J. Use of crowdsourced research to develop a prognostic model for first-line metastatic castrate resistant prostate cancer (mCRPC). Journal of Clinical Oncology. 34: 180-180. DOI: 10.1200/Jco.2016.34.2_Suppl.180  0.01
2015 Goodspeed A, Heiser LM, Gray JW, Costello JC. Tumor-derived Cell Lines as Molecular Models of Cancer Pharmacogenomics. Molecular Cancer Research : McR. PMID 26248648 DOI: 10.1158/1541-7786.Mcr-15-0189  0.52
2015 Rodrigues LU, Rider L, Nieto C, Romero L, Karimpour-Fard A, Loda M, Lucia MS, Wu M, Shi L, Cimic A, Sirintrapun SJ, Nolley R, Pac C, Chen H, Peehl DM, ... Costello JC, et al. Coordinate loss of MAP3K7 and CHD1 promotes aggressive prostate cancer. Cancer Research. 75: 1021-34. PMID 25770290 DOI: 10.1158/0008-5472.Can-14-1596  0.01
2015 Borah S, Xi L, Zaug AJ, Powell NM, Dancik GM, Cohen SB, Costello JC, Theodorescu D, Cech TR. Cancer. TERT promoter mutations and telomerase reactivation in urothelial cancer. Science (New York, N.Y.). 347: 1006-10. PMID 25722414 DOI: 10.1126/Science.1260200  0.01
2015 Griner EM, Dancik GM, Costello JC, Owens C, Guin S, Edwards MG, Brautigan DL, Theodorescu D. RhoC Is an Unexpected Target of RhoGDI2 in Prevention of Lung Colonization of Bladder Cancer. Molecular Cancer Research : McR. 13: 483-92. PMID 25516960 DOI: 10.1158/1541-7786.Mcr-14-0420  0.01
2015 Zhou FL, Guinney J, Abdallah K, Norman TC, Bot B, Costello J, Shen L, Wang T, Xie Y, Stolovitzky GA. Building a crowd-sourced challenge using clinical trial data. Journal of Clinical Oncology. 33: e16047-e16047. DOI: 10.1200/Jco.2015.33.15_Suppl.E16047  0.01
2014 Bansal M, Yang J, Karan C, Menden MP, Costello JC, Tang H, Xiao G, Li Y, Allen J, Zhong R, Chen B, Kim M, Wang T, Heiser LM, Realubit R, et al. A community computational challenge to predict the activity of pairs of compounds. Nature Biotechnology. 32: 1213-22. PMID 25419740 DOI: 10.1038/Nbt.3052  0.52
2014 Wang CA, Drasin D, Pham C, Jedlicka P, Zaberezhnyy V, Guney M, Li H, Nemenoff R, Costello JC, Tan AC, Ford HL. Homeoprotein Six2 promotes breast cancer metastasis via transcriptional and epigenetic control of E-cadherin expression. Cancer Research. 74: 7357-70. PMID 25348955 DOI: 10.1158/0008-5472.Can-14-0666  0.01
2014 Nickerson ML, Dancik GM, Im KM, Edwards MG, Turan S, Brown J, Ruiz-Rodriguez C, Owens C, Costello JC, Guo G, Tsang SX, Li Y, Zhou Q, Cai Z, Moore LE, et al. Concurrent alterations in TERT, KDM6A, and the BRCA pathway in bladder cancer. Clinical Cancer Research : An Official Journal of the American Association For Cancer Research. 20: 4935-48. PMID 25225064 DOI: 10.1158/1078-0432.Ccr-14-0330  0.01
2014 Costello JC, Theodorescu D. Decade in review-bladder cancer: international progress: from cytology to genomics. Nature Reviews. Urology. 11: 609-10. PMID 25179501 DOI: 10.1038/Nrurol.2014.236  0.52
2014 Costello JC, Heiser LM, Georgii E, Gönen M, Menden MP, Wang NJ, Bansal M, Ammad-ud-din M, Hintsanen P, Khan SA, Mpindi JP, Kallioniemi O, Honkela A, Aittokallio T, Wennerberg K, et al. A community effort to assess and improve drug sensitivity prediction algorithms. Nature Biotechnology. 32: 1202-12. PMID 24880487 DOI: 10.1038/nbt.2877  0.52
2014 Xue R, Zakharov MN, Xia Y, Bhasin S, Costello JC, Jasuja R. Research resource: EPSLiM: ensemble predictor for short linear motifs in nuclear hormone receptors. Molecular Endocrinology (Baltimore, Md.). 28: 768-77. PMID 24678734 DOI: 10.1210/Me.2014-1006  0.52
2014 Jasuja R, Costello JC, Singh R, Gupta V, Spina CS, Toraldo G, Jang H, Li H, Serra C, Guo W, Chauhan P, Narula NS, Guarneri T, Ergun A, Travison TG, et al. Combined administration of testosterone plus an ornithine decarboxylase inhibitor as a selective prostate-sparing anabolic therapy. Aging Cell. 13: 303-10. PMID 24305501 DOI: 10.1111/Acel.12174  0.52
2013 Gazit R, Garrison BS, Rao TN, Shay T, Costello J, Ericson J, Kim F, Collins JJ, Regev A, Wagers AJ, Rossi DJ. Transcriptome analysis identifies regulators of hematopoietic stem and progenitor cells. Stem Cell Reports. 1: 266-80. PMID 24319662 DOI: 10.1016/J.Stemcr.2013.07.004  0.52
2011 Costello JC, Rosenthal AK, Kurup IV, Masuda I, Medhora M, Ryan LM. Parallel regulation of extracellular ATP and inorganic pyrophosphate: roles of growth factors, transduction modulators, and ANK. Connective Tissue Research. 52: 139-46. PMID 20604715 DOI: 10.3109/03008207.2010.491928  0.01
2006 Costello JC. Can or should CAP be applied to child research subjects?: A comment on Kim and Appelbaum Behavioral Sciences and the Law. 24: 479-484. PMID 16883618 DOI: 10.1002/bsl.693  0.01
2006 Costello J, Sentmanat M, Bogart K. DGRC Hybridization Troubleshooting Guide Cgb Technical Report. 2006. DOI: 10.2506/Cgbtr-200612  0.01
2006 Costello J, Andrews J. Re-Annotation of DGRC-1 Amplicon Microarrays from Drosophila melanogaster Annotation version 3.1 to version 4.1 Cgb Technical Report. 2006. DOI: 10.2506/Cgbtr-200607  0.01
2004 Costello JC, Ryan LM. Modulation of chondrocyte production of extracellular inorganic pyrophosphate Current Opinion in Rheumatology. 16: 268-272. PMID 15103256 DOI: 10.1097/00002281-200405000-00017  0.01
2003 Costello JC. "The trouble is they're growing, the trouble is they're grown": therapeutic jurisprudence and adolescents' participation in mental health care decisions Ohio Northern University Law Review. 29: 607-640. PMID 15868684  0.01
2003 Costello JC, Halverson PB. A New Era in Rheumatoid Arthritis Treatment Wisconsin Medical Journal. 102: 29-33. PMID 14711021  0.01
2003 Costello JC. "Wayward and noncompliant" people with mental disabilities: What advocates of involuntary outpatient commitment can learn from the juvenile court experience with status offense jurisdiction Psychology, Public Policy, and Law. 9: 233-257. DOI: 10.1037/1076-8971.9.1-2.233  0.01
2002 Costello JC. Why have hearings for kids if you're not going to listen?: A therapeutic jurisprudence approach to mental disability proceedings for minors University of Cincinnati Law Review. 71: 19-41.  0.01
1998 Costello JC. Making kids take their medicine: the privacy and due process rights of de facto competent minors Loyola of Los Angeles Law Review. 31: 907-927. PMID 11660787  0.01
1987 Costello JC, Jameson EJ. Legal and ethical duties of health care professionals to incarcerated children. The Journal of Legal Medicine. 8: 191-263. PMID 3497217 DOI: 10.1080/01947648709513498  0.01
1982 Honeybourne D, Costello JC, Barham C. Tracheal damage after endotracheal intubation: Comparison of two types of endotracheal tubes Thorax. 37: 500-502. PMID 7135289 DOI: 10.1136/thx.37.7.500  0.01
1981 Costello JC, Chisholm SW. The influence of cell size on the growth rate of Thalassiosira weissflogii Journal of Plankton Research. 3: 415-419. DOI: 10.1093/Plankt/3.3.415  0.01
1964 Costello JC, Wall E. The Engineers Joint Council-Battelle Memorial Institute coordinate indexing and abstracting training course Journal of Chemical Documentation. 4: 26-29.  0.01
1964 Costello JC. The charter: A "must" for effective information system planning and design Journal of Chemical Documentation. 4: 12-20.  0.01
1964 Costello JC. A basic theory of roles as syntactical control devices in coordinate indexes Journal of Chemical Documentation. 4: 116-124.  0.01
1963 Costello JC. An introduction to deep (coordinate) indexes Journal of Chemical Documentation. 3: 164-168.  0.01
1962 Costello JC. Developing a deep index introductory remarks to symposium Journal of Chemical Documentation. 2: 214.  0.01
2020 . ImmGen at 15. Nature Immunology. 21: 700-703. PMID 32577013 DOI: 10.1038/S41590-020-0687-4  0
2020 Bordeaux EK, Sottnik JL, Goodspeed AE, Ferrara SE, Costello JC, Sikora MJ. OR12-05 MDC1 Is a Novel Estrogen Receptor Co-Regulator in Invasive Lobular Carcinoma of the Breast Journal of the Endocrine Society. 4. DOI: 10.1210/Jendso/Bvaa046.441  0
2020 Tu MM, Lee FYF, Jones RT, Kimball AK, Saravia E, Graziano RF, Coleman B, Menard K, Yan J, Michaud E, Chang H, Abdel-Hafiz HA, Rozhok AI, Duex JE, Agarwal N, ... ... Costello JC, et al. Abstract IA10: Developing rational combination therapy with checkpoint inhibitors Clinical Cancer Research. 26. DOI: 10.1158/1557-3265.Bladder19-Ia10  0
2020 Goodspeed AE, Jean A, Costello JC. Abstract B08: MSH2 downregulation induces chemoresistance in bladder cancer Clinical Cancer Research. 26. DOI: 10.1158/1557-3265.Bladder19-B08  0
2020 Zhou H, Blevins M, Kong D, Hsu J, Galbraith M, Goodspeed A, Culp-Hill R, Oliphant M, Ramirez D, Gustafson D, D'Alessandro A, Costello J, Patnaik S, Marugan J, Zhao R, et al. Novel Small Molecule Compound disrupts the SIX1/EYA2 Complex and Inhibits Breast Cancer Metastasis The Faseb Journal. 34: 1-1. DOI: 10.1096/Fasebj.2020.34.S1.02458  0
2019 Jones RT, Zuiverloon TC, Vekony H, Goodspeed A, Laajala TD, Joshi M, Sempeck C, Tu M, Costello JC, Theodorescu D. Abstract 2107: Integrative molecular and functional genomic analysis of chemotherapy resistant bladder cancer cell lines identifies novel mediators of therapeutic response Cancer Research. DOI: 10.1158/1538-7445.Sabcs18-2107  0
2019 Tu MM, Lee FY, Jones RT, Kimball AK, Saravia E, Graziano RF, Coleman B, Menard K, Yan J, Michaud E, Chang H, Abdel-Hafiz HA, Rozhok AI, Duex JE, Agarwal N, ... ... Costello JC, et al. Abstract 4085: DDR2 inhibition enhances response to anti-PD-1 immunotherapy Cancer Research. 79: 4085-4085. DOI: 10.1158/1538-7445.Am2019-4085  0
2019 Laajala TD, Gerke T, Tyekucheva S, Costello JC. Modeling genetic heterogeneity of drug response and resistance in cancer Current Opinion in Systems Biology. 17: 8-14. DOI: 10.1016/J.Coisb.2019.09.003  0
2018 Oliphant MU, Pandey A, Johnson K, Powers R, Galbraith M, Costello J, Ford HL. Abstract 5001: Identification of a Six2/Sox2/Nanog stem cell axis that promotes breast cancer metastatic colonization Cancer Research. 78: 5001-5001. DOI: 10.1158/1538-7445.Am2018-5001  0
2017 Rider LC, Rodrigues LU, Karimpour-Fard A, Romero L, Gillette C, Costello JC, Cramer SD. Abstract 1580: Combined neuroendocrine differentiation and androgen receptor hyperactivity in MAP37 and CHD1 null prostate cancer Endocrinology. 77: 1580-1580. DOI: 10.1158/1538-7445.Am2017-1580  0
2016 Nickerson M, Im KM, Guo G, Gui Y, Turan S, Costello JC, Zhou Q, Cai Z, Wu S, Lucia MS, Moore LE, Dean M, Theodorescu D. Abstract A52: Gene alterations associated with clinical characteristics of bladder cancer Cancer Research. 76. DOI: 10.1158/1538-7445.Chromepi15-A52  0
2016 Hernandez B, Cronise K, Costello JC, Page R, Lana S, Jones KL, Duval DL. Abstract 617: Canine transitional cell carcinoma of the bladder expresses activated BRAF, but is not sensitive to vemurafenib Cancer Research. 76: 617-617. DOI: 10.1158/1538-7445.Am2016-617  0
2015 Kothari S, Gustafson D, Killian K, Costello J, Edelman DC, Walling J, Meltzer PS, Theodorescu D, Apolo AB. COXEN prediction of antineoplastic drug sensitivity in bladder cancer patients. Journal of Clinical Oncology. 33: 365-365. DOI: 10.1200/Jco.2016.34.2_Suppl.365  0
2015 Guinney J, Wang T, Bare C, Norman T, Bot B, Shen L, Winner K, Friend S, Abdallah K, Stolovitzky G, Xie Y, Zhou FL, Costello JC. Abstract B204: A DREAM Challenge to improve prognostic models in patients with metastatic castrate-resistant prostate cancer Molecular Cancer Therapeutics. 14. DOI: 10.1158/1535-7163.Targ-15-B204  0
2012 Kwong LN, Costello JC, Liu H, Jiang S, Helms TL, Langsdorf AE, Jakubosky D, Genovese G, Muller FL, Jeong JH, Bender RP, Chu GC, Flaherty KT, Wargo JA, Collins JJ, et al. Erratum: Corrigendum: Oncogenic NRAS signaling differentially regulates survival and proliferation in melanoma Nature Medicine. 18: 1857-1857. DOI: 10.1038/Nm1212-1857A  0
2006 Eads B, Cash A, Bogart K, Costello J, Andrews J. Troubleshooting microarray hybridizations. Methods in Enzymology. 411: 34-49. PMID 16939784 DOI: 10.1016/S0076-6879(06)11003-4  0
2006 Bogart K, Costello J, Eads B, Bohuski E, Andrews J. Amino Allyl Labeling and Hybridization Protocol Cgb Technical Report. 2006. DOI: 10.2506/Cgbtr-200606  0
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