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Ilan N. Wapinski, Ph.D. - Publications

Affiliations: 
2008 Harvard University, Cambridge, MA, United States 
Area:
Computer Science, Bioinformatics Biology, General Biology
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16 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2018 Georgescu CH, Manson AL, Griggs AD, Desjardins CA, Pironti A, Wapinski I, Abeel T, Haas BJ, Earl AM. SynerClust: a highly scalable, synteny-aware orthologue clustering tool. Microbial Genomics. PMID 30418868 DOI: 10.1099/mgen.0.000231  0.455
2017 Koo BM, Kritikos G, Farelli JD, Todor H, Tong K, Kimsey H, Wapinski I, Galardini M, Cabal A, Peters JM, Hachmann AB, Rudner DZ, Allen KN, Typas A, Gross CA. Construction and Analysis of Two Genome-Scale Deletion Libraries for Bacillus subtilis. Cell Systems. PMID 28189581 DOI: 10.1016/J.Cels.2016.12.013  0.598
2013 Thompson DA, Roy S, Chan M, Styczynski MP, Pfiffner J, French C, Socha A, Thielke A, Napolitano S, Muller P, Kellis M, Konieczka JH, Wapinski I, Regev A. Correction: Evolutionary principles of modular gene regulation in yeasts. Elife. 2: e01114. PMID 23840936 DOI: 10.7554/Elife.01114  0.394
2013 Thompson DA, Roy S, Chan M, Styczynsky MP, Pfiffner J, French C, Socha A, Thielke A, Napolitano S, Muller P, Kellis M, Konieczka JH, Wapinski I, Regev A. Evolutionary principles of modular gene regulation in yeasts. Elife. 2: e00603. PMID 23795289 DOI: 10.7554/Elife.00603  0.499
2013 Roy S, Wapinski I, Pfiffner J, French C, Socha A, Konieczka J, Habib N, Kellis M, Thompson D, Regev A. Arboretum: reconstruction and analysis of the evolutionary history of condition-specific transcriptional modules. Genome Research. 23: 1039-50. PMID 23640720 DOI: 10.1101/Gr.146233.112  0.514
2012 Habib N, Wapinski I, Margalit H, Regev A, Friedman N. A functional selection model explains evolutionary robustness despite plasticity in regulatory networks. Molecular Systems Biology. 8: 619. PMID 23089682 DOI: 10.1038/Msb.2012.50  0.452
2012 Carvunis AR, Rolland T, Wapinski I, Calderwood MA, Yildirim MA, Simonis N, Charloteaux B, Hidalgo CA, Barbette J, Santhanam B, Brar GA, Weissman JS, Regev A, Thierry-Mieg N, Cusick ME, et al. Proto-genes and de novo gene birth. Nature. 487: 370-4. PMID 22722833 DOI: 10.1038/Nature11184  0.64
2012 McGuire AM, Weiner B, Park ST, Wapinski I, Raman S, Dolganov G, Peterson M, Riley R, Zucker J, Abeel T, White J, Sisk P, Stolte C, Koehrsen M, Yamamoto RT, et al. Comparative analysis of Mycobacterium and related Actinomycetes yields insight into the evolution of Mycobacterium tuberculosis pathogenesis. Bmc Genomics. 13: 120. PMID 22452820 DOI: 10.1186/1471-2164-13-120  0.396
2011 Rhind N, Chen Z, Yassour M, Thompson DA, Haas BJ, Habib N, Wapinski I, Roy S, Lin MF, Heiman DI, Young SK, Furuya K, Guo Y, Pidoux A, Chen HM, et al. Comparative functional genomics of the fission yeasts. Science (New York, N.Y.). 332: 930-6. PMID 21511999 DOI: 10.1126/Science.1203357  0.59
2010 Wapinski I, Regev A. Reconstructing gene histories in Ascomycota fungi. Methods in Enzymology. 470: 447-85. PMID 20946821 DOI: 10.1016/S0076-6879(10)70018-5  0.674
2010 Ma LJ, van der Does HC, Borkovich KA, Coleman JJ, Daboussi MJ, Di Pietro A, Dufresne M, Freitag M, Grabherr M, Henrissat B, Houterman PM, Kang S, Shim WB, Woloshuk C, Xie X, ... ... Wapinski I, et al. Comparative genomics reveals mobile pathogenicity chromosomes in Fusarium. Nature. 464: 367-73. PMID 20237561 DOI: 10.1038/Nature08850  0.335
2010 Wapinski I, Pfiffner J, French C, Socha A, Thompson DA, Regev A. Gene duplication and the evolution of ribosomal protein gene regulation in yeast. Proceedings of the National Academy of Sciences of the United States of America. 107: 5505-10. PMID 20212107 DOI: 10.1073/Pnas.0911905107  0.643
2008 Bedford T, Wapinski I, Hartl DL. Overdispersion of the molecular clock varies between yeast, Drosophila and mammals. Genetics. 179: 977-84. PMID 18505862 DOI: 10.1534/Genetics.108.089185  0.379
2008 Li QR, Carvunis AR, Yu H, Han JD, Zhong Q, Simonis N, Tam S, Hao T, Klitgord NJ, Dupuy D, Mou D, Wapinski I, Regev A, Hill DE, Cusick ME, et al. Revisiting the Saccharomyces cerevisiae predicted ORFeome. Genome Research. 18: 1294-303. PMID 18502943 DOI: 10.1101/Gr.076661.108  0.461
2007 Wapinski I, Pfeffer A, Friedman N, Regev A. Natural history and evolutionary principles of gene duplication in fungi. Nature. 449: 54-61. PMID 17805289 DOI: 10.1038/Nature06107  0.593
2007 Wapinski I, Pfeffer A, Friedman N, Regev A. Automatic genome-wide reconstruction of phylogenetic gene trees. Bioinformatics (Oxford, England). 23: i549-58. PMID 17646342 DOI: 10.1093/bioinformatics/btm193  0.58
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