Raja Jothi, Ph.D. - Publications

Affiliations: 
2004 University of Texas at Dallas, Richardson, TX, United States 
Area:
Computer Science, Operations Research

23 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Kim HJ, Osteil P, Humphrey SJ, Cinghu S, Oldfield AJ, Patrick E, Wilkie EE, Peng G, Suo S, Jothi R, Tam PPL, Yang P. Transcriptional network dynamics during the progression of pluripotency revealed by integrative statistical learning. Nucleic Acids Research. PMID 31853542 DOI: 10.1093/Nar/Gkz1179  0.304
2012 Chalancon G, Ravarani CN, Balaji S, Martinez-Arias A, Aravind L, Jothi R, Babu MM. Interplay between gene expression noise and regulatory network architecture. Trends in Genetics : Tig. 28: 221-32. PMID 22365642 DOI: 10.1016/J.Tig.2012.01.006  0.314
2011 Yellaboina S, Tasneem A, Zaykin DV, Raghavachari B, Jothi R. DOMINE: a comprehensive collection of known and predicted domain-domain interactions. Nucleic Acids Research. 39: D730-5. PMID 21113022 DOI: 10.1093/Nar/Gkq1229  0.637
2009 Jothi R, Balaji S, Wuster A, Grochow JA, Gsponer J, Przytycka TM, Aravind L, Babu MM. Genomic analysis reveals a tight link between transcription factor dynamics and regulatory network architecture. Molecular Systems Biology. 5: 294. PMID 19690563 DOI: 10.1038/Msb.2009.52  0.312
2009 Liu M, Chen XW, Jothi R. Knowledge-guided inference of domain-domain interactions from incomplete protein-protein interaction networks. Bioinformatics (Oxford, England). 25: 2492-9. PMID 19667081 DOI: 10.1093/Bioinformatics/Btp480  0.308
2009 Ho L, Jothi R, Ronan JL, Cui K, Zhao K, Crabtree GR. An embryonic stem cell chromatin remodeling complex, esBAF, is an essential component of the core pluripotency transcriptional network. Proceedings of the National Academy of Sciences of the United States of America. 106: 5187-91. PMID 19279218 DOI: 10.1073/Pnas.0812888106  0.311
2009 Jothi R, Raghavachari B. Improved approximation algorithms for the single-sink buy-at-bulk network design problems Journal of Discrete Algorithms. 7: 249-255. DOI: 10.1016/J.Jda.2008.12.003  0.691
2009 Jothi R, Raghavachari B. Degree-bounded minimum spanning trees Discrete Applied Mathematics. 157: 960-970. DOI: 10.1016/J.Dam.2008.03.037  0.686
2008 Raghavachari B, Tasneem A, Przytycka TM, Jothi R. DOMINE: a database of protein domain interactions. Nucleic Acids Research. 36: D656-61. PMID 17913741 DOI: 10.1093/Nar/Gkm761  0.641
2007 Jothi R, Raghavachari B. Approximating the k-traveling repairman problem with repairtimes Journal of Discrete Algorithms. 5: 293-303. DOI: 10.1016/J.Jda.2006.03.023  0.694
2006 Guimarães KS, Jothi R, Zotenko E, Przytycka TM. Predicting domain-domain interactions using a parsimony approach. Genome Biology. 7: R104. PMID 17094802 DOI: 10.1186/Gb-2006-7-11-R104  0.332
2006 Jothi R, Cherukuri PF, Tasneem A, Przytycka TM. Co-evolutionary analysis of domains in interacting proteins reveals insights into domain-domain interactions mediating protein-protein interactions. Journal of Molecular Biology. 362: 861-75. PMID 16949097 DOI: 10.1016/J.Jmb.2006.07.072  0.303
2006 Gong C, Sarac K, Daescu O, Raghavachari B, Jothi R. Load-balanced agent activation for value-added network services Computer Communications. 29: 1905-1916. DOI: 10.1016/J.Comcom.2005.10.035  0.679
2005 Jothi R, Kann MG, Przytycka TM. Predicting protein-protein interaction by searching evolutionary tree automorphism space. Bioinformatics (Oxford, England). 21: i241-50. PMID 15961463 DOI: 10.1093/Bioinformatics/Bti1009  0.314
2005 Wang J, Vokkarane VM, Jothi R, Qi X, Raghavachari B, Jue JP. Dual-homing protection in IP-over-WDM networks Journal of Lightwave Technology. 23: 3111-3124. DOI: 10.1109/Jlt.2005.856321  0.671
2004 Jothi R, Raghavachari B. Approximation algorithms for the capacitated minimum spanning tree problem and its variants in network design Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 3142: 805-818. DOI: 10.1145/1103963.1103967  0.706
2004 Jothi R, Raghavachari B. Survivable network design: The capacitated minimum spanning network problem Information Processing Letters. 91: 183-190. DOI: 10.1016/J.Ipl.2004.04.007  0.707
2004 Jothi R, Raghavachari B. Minimum latency tours and the k-traveling repairmen problem Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 2976: 423-433.  0.678
2004 Daescu O, Jothi R, Raghavachari B, Sarac K. Optimal placement of NAK-suppressing agents for reliable multicast: A partial deployment case Proceedings of the Acm Symposium On Applied Computing. 1: 334-338.  0.667
2004 Gong C, Daescu O, Jothi R, Raghavachari B, Sarac K. Load balancing for reliable multicast 433-121 Proceedings of the Third Iasted International Conference On Communications, Internet, and Information Technology. 86-91.  0.676
2004 Vokkarane VM, Wang J, Qi X, Jothi R, Raghavachari B, Jue JP. Dynamic dual-homing protection in WDM mesh networks Ieee International Conference On Communications. 3: 1644-1648.  0.65
2003 Jothi R, Raghavachari B. Design of local access networks Proceedings of the Iasted International Conference On Parallel and Distributed Computing and Systems. 15: 883-888.  0.677
2003 Jothi R, Raghavachari B, Varadarajan S. A 5/4-approximation algorithm for minimum 2-edge-connectivity Proceedings of the Annual Acm-Siam Symposium On Discrete Algorithms. 725-734.  0.633
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