Jeremy R. Wang, Ph.D. - Related publications

2013 Computer Science University of North Carolina, Chapel Hill, Chapel Hill, NC 
Computer Science, Bioinformatics Biology, Genetics
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50 most relevant papers in past 60 days:
Year Citation  Score
2021 Yu S, Fang T, Dong H, Yan L, Martin DL, Moss JQ, Fontanier CH, Wu Y. Genetic and QTL mapping in African bermudagrass. The Plant Genome. e20073. PMID 33660431 DOI: 10.1002/tpg2.20073   
2021 Cesarani A, Garcia A, Hidalgo J, Degano L, Vicario D, Macciotta NPP, Lourenco D. Genomic information allows for more accurate breeding values for milkability in dual-purpose Italian Simmental cattle. Journal of Dairy Science. PMID 33612221 DOI: 10.3168/jds.2020-19838   
2021 Vu SV, Gondro C, Nguyen NTH, Gilmour AR, Tearle R, Knibb W, Dove M, Vu IV, Khuong LD, O'Connor W. Prediction Accuracies of Genomic Selection for Nine Commercially Important Traits in the Portuguese Oyster () Using DArT-Seq Technology. Genes. 12. PMID 33535381 DOI: 10.3390/genes12020210   
2021 Taliun D, Harris DN, Kessler MD, Carlson J, Szpiech ZA, Torres R, Taliun SAG, Corvelo A, Gogarten SM, Kang HM, Pitsillides AN, LeFaive J, Lee SB, Tian X, Browning BL, ... , et al. Sequencing of 53,831 diverse genomes from the NHLBI TOPMed Program. Nature. 590: 290-299. PMID 33568819 DOI: 10.1038/s41586-021-03205-y   
2021 Kajiya-Kanegae H, Nagasaki H, Kaga A, Hirano K, Ogiso-Tanaka E, Matsuoka M, Ishimori M, Ishimoto M, Hashiguchi M, Tanaka H, Akashi R, Isobe S, Iwata H. Whole-genome sequence diversity and association analysis of 198 soybean accessions in mini-core collections. Dna Research : An International Journal For Rapid Publication of Reports On Genes and Genomes. PMID 33492369 DOI: 10.1093/dnares/dsaa032   
2021 Wu R, Li H, Li R, Peng D, Wang N, Shen X, Sun H. Identification and sequencing of 59 highly polymorphic microhaplotypes for analysis of DNA mixtures. International Journal of Legal Medicine. PMID 33502549 DOI: 10.1007/s00414-020-02483-x   
2021 Kumar D, Sharma S, Sharma R, Pundir S, Singh VK, Chaturvedi D, Singh B, Kumar S, Sharma S. Genome-wide association study in hexaploid wheat identifies novel genomic regions associated with resistance to root lesion nematode (Pratylenchus thornei). Scientific Reports. 11: 3572. PMID 33574377 DOI: 10.1038/s41598-021-80996-0   
2021 Tibbs Cortes L, Zhang Z, Yu J. Status and prospects of genome-wide association studies in plants. The Plant Genome. e20077. PMID 33442955 DOI: 10.1002/tpg2.20077   
2021 Chen Y, Wu H, Yang W, Zhao W, Tong C. Multivariate linear mixed model enhanced the power of identifying genome-wide association to poplar tree heights in a randomized complete block design. G3 (Bethesda, Md.). 11. PMID 33604666 DOI: 10.1093/g3journal/jkaa053   
2021 Pasion EA, Badoni S, Misra G, Anacleto R, Parween S, Kohli A, Sreenivasulu N. OsTPR boosts the superior grains through increase in upper secondary rachis branches without incurring a grain quality penalty. Plant Biotechnology Journal. PMID 33544455 DOI: 10.1111/pbi.13560   
2021 Goyal M, De Bruyne K, van Belkum A, West B. Different SARS-CoV-2 haplotypes associate with geographic origin and case fatality rates of COVID-19 patients. Infection, Genetics and Evolution : Journal of Molecular Epidemiology and Evolutionary Genetics in Infectious Diseases. 90: 104730. PMID 33513449 DOI: 10.1016/j.meegid.2021.104730   
2021 Vogel G, LaPlant KE, Mazourek M, Gore MA, Smart CD. A combined BSA-Seq and linkage mapping approach identifies genomic regions associated with Phytophthora root and crown rot resistance in squash. Tag. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. PMID 33388885 DOI: 10.1007/s00122-020-03747-1   
2021 Lefebvre R, Larroque H, Barbey S, Gallard Y, Colleau JJ, Lainé AL, Boichard D, Martin P. Genome-wide association study for age at puberty and resumption of cyclicity in a crossbred dairy cattle population. Journal of Dairy Science. PMID 33516553 DOI: 10.3168/jds.2020-18228   
2021 Bahrami S, Shadrin A, Frei O, O'Connell KS, Bettella F, Krull F, Fan CC, Røssberg JI, Hindley G, Ueland T, Dale AM, Djurovic S, Steen NE, Smeland OB, Andreassen OA. Genetic loci shared between major depression and intelligence with mixed directions of effect. Nature Human Behaviour. PMID 33462475 DOI: 10.1038/s41562-020-01031-2   
2021 Zhou X, Zhang L, Weng Z, Dill DL, Sidow A. Aquila enables reference-assisted diploid personal genome assembly and comprehensive variant detection based on linked reads. Nature Communications. 12: 1077. PMID 33597536 DOI: 10.1038/s41467-021-21395-x   
2021 Freitas PHF, Wang Y, Yan P, Oliveira HR, Schenkel FS, Zhang Y, Xu Q, Brito LF. Genetic Diversity and Signatures of Selection for Thermal Stress in Cattle and Other Two Species Adapted to Divergent Climatic Conditions. Frontiers in Genetics. 12: 604823. PMID 33613634 DOI: 10.3389/fgene.2021.604823   
2021 Li F, Liu J, Liu W, Gao J, Lei Q, Han H, Yang J, Li H, Cao D, Zhou Y. Genome-wide association study of body size traits in Wenshang Barred chickens based on the specific-locus amplified fragment sequencing technology. Animal Science Journal = Nihon Chikusan Gakkaiho. 92: e13506. PMID 33398896 DOI: 10.1111/asj.13506   
2021 Vinayan MT, Seetharam K, Babu R, Zaidi PH, Blummel M, Nair SK. Genome wide association study and genomic prediction for stover quality traits in tropical maize (Zea mays L.). Scientific Reports. 11: 686. PMID 33436870 DOI: 10.1038/s41598-020-80118-2   
2021 Seo D, Cho S, Manjula P, Choi N, Kim YK, Koh YJ, Lee SH, Kim HY, Lee JH. Identification of Target Chicken Populations by Machine Learning Models Using the Minimum Number of SNPs. Animals : An Open Access Journal From Mdpi. 11. PMID 33477975 DOI: 10.3390/ani11010241   
2021 Yi Q, Álvarez-Iglesias L, Malvar RA, Romay MC, Revilla P. A worldwide maize panel revealed new genetic variation for cold tolerance. Tag. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. PMID 33582854 DOI: 10.1007/s00122-020-03753-3   
2021 Maggi J, Koller S, Bähr L, Feil S, Kivrak Pfiffner F, Hanson JVM, Maspoli A, Gerth-Kahlert C, Berger W. Long-Range PCR-Based NGS Applications to Diagnose Mendelian Retinal Diseases. International Journal of Molecular Sciences. 22. PMID 33546218 DOI: 10.3390/ijms22041508   
2021 López-Malvar A, Butron A, Malvar RA, McQueen-Mason SJ, Faas L, Gómez LD, Revilla P, Figueroa-Garrido DJ, Santiago R. Association mapping for maize stover yield and saccharification efficiency using a multiparent advanced generation intercross (MAGIC) population. Scientific Reports. 11: 3425. PMID 33564080 DOI: 10.1038/s41598-021-83107-1   
2021 Rubinacci S, Ribeiro DM, Hofmeister RJ, Delaneau O. Efficient phasing and imputation of low-coverage sequencing data using large reference panels. Nature Genetics. 53: 120-126. PMID 33414550 DOI: 10.1038/s41588-020-00756-0   
2021 Ngoot-Chin T, Zulkifli MA, van de Weg E, Zaki NM, Serdari NM, Mustaffa S, Zainol Abidin MI, Sanusi NSNM, Smulders MJM, Low ETL, Ithnin M, Singh R. Detection of ploidy and chromosomal aberrations in commercial oil palm using high-throughput SNP markers. Planta. 253: 63. PMID 33544231 DOI: 10.1007/s00425-021-03567-7   
2021 Wang D, Sun W, Yuan Z, Sun Q, Fan K, Zhang C, Yu S. Identification of a novel QTL and candidate gene associated with grain size using chromosome segment substitution lines in rice. Scientific Reports. 11: 189. PMID 33420305 DOI: 10.1038/s41598-020-80667-6   
2021 Grau-Perez M, Voruganti VS, Balakrishnan P, Haack K, Goessler W, Franceschini N, Redón J, Cole SA, Navas-Acien A, Tellez-Plaza M. Genetic variation and urine cadmium levels: ABCC1 effects in the Strong Heart Family Study. Environmental Pollution (Barking, Essex : 1987). 276: 116717. PMID 33640655 DOI: 10.1016/j.envpol.2021.116717   
2021 Ding X, Schimenti JC. Strategies to Identify Genetic Variants Causing Infertility. Trends in Molecular Medicine. PMID 33431240 DOI: 10.1016/j.molmed.2020.12.008   
2021 Wang YF, Zhang Y, Lin Z, Zhang H, Wang TY, Cao Y, Morris DL, Sheng Y, Yin X, Zhong SL, Gu X, Lei Y, He J, Wu Q, Shen JJ, et al. Identification of 38 novel loci for systemic lupus erythematosus and genetic heterogeneity between ancestral groups. Nature Communications. 12: 772. PMID 33536424 DOI: 10.1038/s41467-021-21049-y   
2021 Papathomas TG, Suurd DPD, Pacak K, Tischler AS, Vriens MR, Lam AK, de Krijger RR. What Have We Learned from Molecular Biology of Paragangliomas and Pheochromocytomas? Endocrine Pathology. PMID 33433885 DOI: 10.1007/s12022-020-09658-7   
2021 Munyengwa N, Le Guen V, Bille HN, Souza LM, Clément-Demange A, Mournet P, Masson A, Soumahoro M, Kouassi D, Cros D. Optimizing imputation of marker data from genotyping-by-sequencing (GBS) for genomic selection in non-model species: Rubber tree (Hevea brasiliensis) as a case study. Genomics. 113: 655-668. PMID 33508443 DOI: 10.1016/j.ygeno.2021.01.012   
2021 Tanaka N, Shenton M, Kawahara Y, Kumagai M, Sakai H, Kanamori H, Yonemaru JI, Fukuoka S, Sugimoto K, Ishimoto M, Wu J, Ebana K. Investigation of the Genetic Diversity of a Rice Core Collection of Japanese Landraces using Whole-Genome Sequencing. Plant & Cell Physiology. 61: 2087-2096. PMID 33539537 DOI: 10.1093/pcp/pcaa125   
2021 Estrada-Reyes ZM, Owen Rae D, Mateescu RG. Genome-wide scan reveals important additive and non-additive genetic effects associated with resistance to Haemonchus contortus in Florida Native sheep. International Journal For Parasitology. PMID 33549580 DOI: 10.1016/j.ijpara.2020.11.003   
2021 Luo H, Li X, Hu L, Xu W, Chu Q, Liu A, Guo G, Liu L, Brito LF, Wang Y. Genomic analyses and biological validation of candidate genes for rectal temperature as an indicator of heat stress in Holstein cattle. Journal of Dairy Science. PMID 33589260 DOI: 10.3168/jds.2020-18725   
2021 Psifidi A, Kranis A, Rothwell LM, Bremner A, Russell K, Robledo D, Bush SJ, Fife M, Hocking PM, Banos G, Hume DA, Kaufman J, Bailey RA, Avendano S, Watson KA, et al. Quantitative trait loci and transcriptome signatures associated with avian heritable resistance to Campylobacter. Scientific Reports. 11: 1623. PMID 33436657 DOI: 10.1038/s41598-020-79005-7   
2021 Kurilshikov A, Medina-Gomez C, Bacigalupe R, Radjabzadeh D, Wang J, Demirkan A, Le Roy CI, Raygoza Garay JA, Finnicum CT, Liu X, Zhernakova DV, Bonder MJ, Hansen TH, Frost F, Rühlemann MC, et al. Large-scale association analyses identify host factors influencing human gut microbiome composition. Nature Genetics. PMID 33462485 DOI: 10.1038/s41588-020-00763-1   
2021 Finke K, Kourakos M, Brown G, Dang HT, Tan SJS, Simons YB, Ramdas S, Schäffer AA, Kember RL, Bućan M, Mathieson S. Ancestral haplotype reconstruction in endogamous populations using identity-by-descent. Plos Computational Biology. 17: e1008638. PMID 33635861 DOI: 10.1371/journal.pcbi.1008638   
2021 Duan X, An B, Du L, Chang T, Liang M, Yang BG, Xu L, Zhang L, Li J, E G, Gao H. Genome-Wide Association Analysis of Growth Curve Parameters in Chinese Simmental Beef Cattle. Animals : An Open Access Journal From Mdpi. 11. PMID 33467455 DOI: 10.3390/ani11010192   
2021 Xiang R, MacLeod IM, Daetwyler HD, de Jong G, O'Connor E, Schrooten C, Chamberlain AJ, Goddard ME. Genome-wide fine-mapping identifies pleiotropic and functional variants that predict many traits across global cattle populations. Nature Communications. 12: 860. PMID 33558518 DOI: 10.1038/s41467-021-21001-0   
2021 Verzegnazzi AL, Dos Santos IG, Krause MD, Hufford M, Frei UK, Campbell J, Almeida VC, Zuffo LT, Boerman N, Lübberstedt T. Major locus for spontaneous haploid genome doubling detected by a case-control GWAS in exotic maize germplasm. Tag. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. PMID 33543310 DOI: 10.1007/s00122-021-03780-8   
2021 Norton GJ, Travis A, Ruang-Areerate P, Nicol GW, Adeosun AA, Hossain M, Islam MR, Douglas A, Price AH. Genetic loci regulating cadmium content in rice grains. Euphytica: Netherlands Journal of Plant Breeding. 217: 35. PMID 33627887 DOI: 10.1007/s10681-020-02752-1   
2021 Zhang Z, Zhong H, Lin S, Liang L, Ye S, Xu Z, Ji C, Zhang Z, Zhang D, Zhang X. Polymorphisms of AMY1A gene and their association with growth, carcass traits and feed intake efficiency in chickens. Genomics. PMID 33485951 DOI: 10.1016/j.ygeno.2020.10.041   
2021 Ma G, Long Y, Song Q, Talukder ZI, Shamimuzzaman M, Qi L. Map and sequence-based chromosome walking towards cloning of the male fertility restoration gene Rf5 linked to R in sunflower. Scientific Reports. 11: 777. PMID 33437028 DOI: 10.1038/s41598-020-80659-6   
2021 Ma G, Long Y, Song Q, Talukder ZI, Shamimuzzaman M, Qi L. Map and sequence-based chromosome walking towards cloning of the male fertility restoration gene Rf5 linked to R in sunflower. Scientific Reports. 11: 777. PMID 33437028 DOI: 10.1038/s41598-020-80659-6   
2021 Shabalina T, Yin T, May K, König S. Proofs for genotype by environment interactions considering pedigree and genomic data from organic and conventional cow reference populations. Journal of Dairy Science. PMID 33589254 DOI: 10.3168/jds.2020-19384   
2021 Bonfante B, Faux P, Navarro N, Mendoza-Revilla J, Dubied M, Montillot C, Wentworth E, Poloni L, Varón-González C, Jones P, Xiong Z, Fuentes-Guajardo M, Palmal S, Chacón-Duque JC, Hurtado M, et al. A GWAS in Latin Americans identifies novel face shape loci, implicating VPS13B and a Denisovan introgressed region in facial variation. Science Advances. 7. PMID 33547071 DOI: 10.1126/sciadv.abc6160   
2021 Fahim AM, Liu F, He J, Wang W, Xing G, Gai J. Evolutionary QTL-allele changes in main stem node number among geographic and seasonal subpopulations of Chinese cultivated soybeans. Molecular Genetics and Genomics : Mgg. PMID 33398500 DOI: 10.1007/s00438-020-01748-9   
2021 Romdhane L, Mezzi N, Dallali H, Messaoud O, Shan J, Fakhro KA, Kefi R, Chouchane L, Abdelhak S. A map of copy number variations in the Tunisian population: a valuable tool for medical genomics in North Africa. Npj Genomic Medicine. 6: 3. PMID 33420067 DOI: 10.1038/s41525-020-00166-5   
2021 Huang Z, Shen F, Chen Y, Cao K, Wang L. Preliminary Identification of Key Genes Controlling Peach Pollen Fertility Using Genome-Wide Association Study. Plants (Basel, Switzerland). 10. PMID 33513678 DOI: 10.3390/plants10020242   
2021 Zhou G, Li S, Ma L, Wang F, Jiang F, Sun Y, Ruan X, Cao Y, Wang Q, Zhang Y, Fan X, Gao X. Mapping and validation of a stable quantitative trait locus conferring maize resistance to Gibberella ear rot. Plant Disease. PMID 33616427 DOI: 10.1094/PDIS-11-20-2487-RE   
2021 Guo W, He S, Liang X, Tian C, Dou Y, Lv L. A high-density genetic linkage map for Chinese perch (Siniperca chuatsi) using 2.3K genotyping-by-sequencing SNPs. Animal Genetics. PMID 33598959 DOI: 10.1111/age.13046