Catherine E. Welsh, Ph.D. - Related publications

2014 Computer Science University of North Carolina, Chapel Hill, Chapel Hill, NC 
Computer Science, Bioinformatics Biology
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50 most relevant papers in past 60 days:
Year Citation  Score
2021 Zhang Y, Cheng Y, Jiang W, Ye Y, Lu Q, Zhao H. Comparison of methods for estimating genetic correlation between complex traits using GWAS summary statistics. Briefings in Bioinformatics. PMID 33497438 DOI: 10.1093/bib/bbaa442   
2021 Song B, Woerner AE, Planz J. mixIndependR: a R package for statistical independence testing of loci in database of multi-locus genotypes. Bmc Bioinformatics. 22: 12. PMID 33407074 DOI: 10.1186/s12859-020-03945-0   
2021 Taliun D, Harris DN, Kessler MD, Carlson J, Szpiech ZA, Torres R, Taliun SAG, Corvelo A, Gogarten SM, Kang HM, Pitsillides AN, LeFaive J, Lee SB, Tian X, Browning BL, ... , et al. Sequencing of 53,831 diverse genomes from the NHLBI TOPMed Program. Nature. 590: 290-299. PMID 33568819 DOI: 10.1038/s41586-021-03205-y   
2021 Tibbs Cortes L, Zhang Z, Yu J. Status and prospects of genome-wide association studies in plants. The Plant Genome. e20077. PMID 33442955 DOI: 10.1002/tpg2.20077   
2021 Wei CY, Yang JH, Yeh EC, Tsai MF, Kao HJ, Lo CZ, Chang LP, Lin WJ, Hsieh FJ, Belsare S, Bhaskar A, Su MW, Lee TC, Lin YL, Liu FT, et al. Genetic profiles of 103,106 individuals in the Taiwan Biobank provide insights into the health and history of Han Chinese. Npj Genomic Medicine. 6: 10. PMID 33574314 DOI: 10.1038/s41525-021-00178-9   
2021 Ding X, Schimenti JC. Strategies to Identify Genetic Variants Causing Infertility. Trends in Molecular Medicine. PMID 33431240 DOI: 10.1016/j.molmed.2020.12.008   
2021 Ning Z, Tsepilov YA, Sharapov SZ, Wang Z, Grishenko AK, Feng X, Shirali M, Joshi PK, Wilson JF, Pawitan Y, Haley CS, Aulchenko YS, Shen X. Nontrivial Replication of Loci Detected by Multi-Trait Methods. Frontiers in Genetics. 12: 627989. PMID 33613642 DOI: 10.3389/fgene.2021.627989   
2021 Kajiya-Kanegae H, Nagasaki H, Kaga A, Hirano K, Ogiso-Tanaka E, Matsuoka M, Ishimori M, Ishimoto M, Hashiguchi M, Tanaka H, Akashi R, Isobe S, Iwata H. Whole-genome sequence diversity and association analysis of 198 soybean accessions in mini-core collections. Dna Research : An International Journal For Rapid Publication of Reports On Genes and Genomes. PMID 33492369 DOI: 10.1093/dnares/dsaa032   
2021 Vogel G, LaPlant KE, Mazourek M, Gore MA, Smart CD. A combined BSA-Seq and linkage mapping approach identifies genomic regions associated with Phytophthora root and crown rot resistance in squash. Tag. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. PMID 33388885 DOI: 10.1007/s00122-020-03747-1   
2021 Ayaad M, Han Z, Zheng K, Hu G, Abo-Yousef M, Sobeih SES, Xing Y. Bin-based genome-wide association studies reveal superior alleles for improvement of appearance quality using a 4-way MAGIC population in rice. Journal of Advanced Research. 28: 183-194. PMID 33364055 DOI: 10.1016/j.jare.2020.08.001   
2021 Xiang R, MacLeod IM, Daetwyler HD, de Jong G, O'Connor E, Schrooten C, Chamberlain AJ, Goddard ME. Genome-wide fine-mapping identifies pleiotropic and functional variants that predict many traits across global cattle populations. Nature Communications. 12: 860. PMID 33558518 DOI: 10.1038/s41467-021-21001-0   
2021 Roth TL, Marson A. Genetic Disease and Therapy. Annual Review of Pathology. 16: 145-166. PMID 33497260 DOI: 10.1146/annurev-pathmechdis-012419-032626   
2021 Lim SE, Sa KJ, Lee JK. Bulk segregant analysis identifies SSR markers associated with leaf- and seed-related traits in Perilla crop (Perilla frutescens L.). Genes & Genomics. PMID 33543373 DOI: 10.1007/s13258-021-01056-5   
2021 Kim HR, Sa KJ, Nam-Gung M, Park KJ, Ryu SH, Mo CY, Lee JK. Genetic characterization and association mapping in near-isogenic lines of waxy maize using seed characteristics and SSR markers. Genes & Genomics. PMID 33433857 DOI: 10.1007/s13258-020-01030-7   
2021 Seo D, Cho S, Manjula P, Choi N, Kim YK, Koh YJ, Lee SH, Kim HY, Lee JH. Identification of Target Chicken Populations by Machine Learning Models Using the Minimum Number of SNPs. Animals : An Open Access Journal From Mdpi. 11. PMID 33477975 DOI: 10.3390/ani11010241   
2021 Torkamaneh D, Belzile F. Accurate Imputation of Untyped Variants from Deep Sequencing Data. Methods in Molecular Biology (Clifton, N.J.). 2243: 271-281. PMID 33606262 DOI: 10.1007/978-1-0716-1103-6_13   
2021 Ngoot-Chin T, Zulkifli MA, van de Weg E, Zaki NM, Serdari NM, Mustaffa S, Zainol Abidin MI, Sanusi NSNM, Smulders MJM, Low ETL, Ithnin M, Singh R. Detection of ploidy and chromosomal aberrations in commercial oil palm using high-throughput SNP markers. Planta. 253: 63. PMID 33544231 DOI: 10.1007/s00425-021-03567-7   
2021 Zinger A, Lapidot M, Harel A, Doron-Faigenboim A, Gelbart D, Levin I. Identification and Mapping of Tomato Genome Loci Controlling Tolerance and Resistance to . Plants (Basel, Switzerland). 10. PMID 33478073 DOI: 10.3390/plants10010179   
2021 Zhou G, Li S, Ma L, Wang F, Jiang F, Sun Y, Ruan X, Cao Y, Wang Q, Zhang Y, Fan X, Gao X. Mapping and validation of a stable quantitative trait locus conferring maize resistance to Gibberella ear rot. Plant Disease. PMID 33616427 DOI: 10.1094/PDIS-11-20-2487-RE   
2021 López-Malvar A, Butron A, Malvar RA, McQueen-Mason SJ, Faas L, Gómez LD, Revilla P, Figueroa-Garrido DJ, Santiago R. Association mapping for maize stover yield and saccharification efficiency using a multiparent advanced generation intercross (MAGIC) population. Scientific Reports. 11: 3425. PMID 33564080 DOI: 10.1038/s41598-021-83107-1   
2021 Blumenfeld B, Masika H, Farago M, Yehuda Y, Halaseh L, Vardi O, Rapoport R, Levin-Klein R, Cedar H, Bergman Y, Simon I. Chromosomal coordination and differential structure of asynchronous replicating regions. Nature Communications. 12: 1035. PMID 33589603 DOI: 10.1038/s41467-021-21348-4   
2021 Yi Q, Álvarez-Iglesias L, Malvar RA, Romay MC, Revilla P. A worldwide maize panel revealed new genetic variation for cold tolerance. Tag. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. PMID 33582854 DOI: 10.1007/s00122-020-03753-3   
2021 Cesarani A, Garcia A, Hidalgo J, Degano L, Vicario D, Macciotta NPP, Lourenco D. Genomic information allows for more accurate breeding values for milkability in dual-purpose Italian Simmental cattle. Journal of Dairy Science. PMID 33612221 DOI: 10.3168/jds.2020-19838   
2021 Chen Y, Wu H, Yang W, Zhao W, Tong C. Multivariate linear mixed model enhanced the power of identifying genome-wide association to poplar tree heights in a randomized complete block design. G3 (Bethesda, Md.). 11. PMID 33604666 DOI: 10.1093/g3journal/jkaa053   
2021 Yao Q, Ferragina P, Reshef Y, Lettre G, Bauer DE, Pinello L. Motif-Raptor: A Cell Type-Specific and Transcription Factor Centric Approach for Post-GWAS Prioritization of Causal Regulators. Bioinformatics (Oxford, England). PMID 33532840 DOI: 10.1093/bioinformatics/btab072   
2021 Munyengwa N, Le Guen V, Bille HN, Souza LM, Clément-Demange A, Mournet P, Masson A, Soumahoro M, Kouassi D, Cros D. Optimizing imputation of marker data from genotyping-by-sequencing (GBS) for genomic selection in non-model species: Rubber tree (Hevea brasiliensis) as a case study. Genomics. 113: 655-668. PMID 33508443 DOI: 10.1016/j.ygeno.2021.01.012   
2021 Foley CN, Staley JR, Breen PG, Sun BB, Kirk PDW, Burgess S, Howson JMM. A fast and efficient colocalization algorithm for identifying shared genetic risk factors across multiple traits. Nature Communications. 12: 764. PMID 33536417 DOI: 10.1038/s41467-020-20885-8   
2021 Fahim AM, Liu F, He J, Wang W, Xing G, Gai J. Evolutionary QTL-allele changes in main stem node number among geographic and seasonal subpopulations of Chinese cultivated soybeans. Molecular Genetics and Genomics : Mgg. PMID 33398500 DOI: 10.1007/s00438-020-01748-9   
2021 Evans LM, Jang S, Hancock DB, Ehringer MA, Otto JM, Vrieze SI, Keller MC. Genetic architecture of four smoking behaviors using partitioned SNP heritability. Addiction (Abingdon, England). PMID 33620764 DOI: 10.1111/add.15450   
2021 Vu SV, Gondro C, Nguyen NTH, Gilmour AR, Tearle R, Knibb W, Dove M, Vu IV, Khuong LD, O'Connor W. Prediction Accuracies of Genomic Selection for Nine Commercially Important Traits in the Portuguese Oyster () Using DArT-Seq Technology. Genes. 12. PMID 33535381 DOI: 10.3390/genes12020210   
2021 Bonfante B, Faux P, Navarro N, Mendoza-Revilla J, Dubied M, Montillot C, Wentworth E, Poloni L, Varón-González C, Jones P, Xiong Z, Fuentes-Guajardo M, Palmal S, Chacón-Duque JC, Hurtado M, et al. A GWAS in Latin Americans identifies novel face shape loci, implicating VPS13B and a Denisovan introgressed region in facial variation. Science Advances. 7. PMID 33547071 DOI: 10.1126/sciadv.abc6160   
2021 Ruan D, Zhuang Z, Ding R, Qiu Y, Zhou S, Wu J, Xu C, Hong L, Huang S, Zheng E, Cai G, Wu Z, Yang J. Weighted Single-Step GWAS Identified Candidate Genes Associated with Growth Traits in a Duroc Pig Population. Genes. 12. PMID 33477978 DOI: 10.3390/genes12010117   
2021 Kostick SA, Teh SL, Norelli JL, Vanderzande S, Peace C, Evans KM. Fire blight QTL analysis in a multi-family apple population identifies a reduced-susceptibility allele in 'Honeycrisp'. Horticulture Research. 8: 28. PMID 33518709 DOI: 10.1038/s41438-021-00466-6   
2021 Verma RK, Chetia SK, Dey PC, Rahman A, Saikia S, Sharma V, Sharma H, Sen P, Modi MK. Genome-wide association studies for agronomical traits in winter rice accessions of Assam. Genomics. PMID 33482327 DOI: 10.1016/j.ygeno.2020.11.033   
2021 Liu C, Chen X, Wang W, Hu X, Han W, He Q, Yang H, Xiang S, Gai J. Identifying Wild Versus Cultivated Gene-Alleles Conferring Seed Coat Color and Days to Flowering in Soybean. International Journal of Molecular Sciences. 22. PMID 33557103 DOI: 10.3390/ijms22041559   
2021 Lefebvre R, Larroque H, Barbey S, Gallard Y, Colleau JJ, Lainé AL, Boichard D, Martin P. Genome-wide association study for age at puberty and resumption of cyclicity in a crossbred dairy cattle population. Journal of Dairy Science. PMID 33516553 DOI: 10.3168/jds.2020-18228   
2021 Ren T, Fan T, Chen S, Li C, Chen Y, Ou X, Jiang Q, Ren Z, Tan F, Luo P, Chen C, Li Z. Utilization of a Wheat55K SNP array-derived high-density genetic map for high-resolution mapping of quantitative trait loci for important kernel-related traits in common wheat. Tag. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. PMID 33388883 DOI: 10.1007/s00122-020-03732-8   
2021 Kumar H, Panigrahi M, Saravanan KA, Parida S, Bhushan B, Gaur GK, Dutt T, Mishra BP, Singh RK. SNPs with intermediate minor allele frequencies facilitate accurate breed assignment of Indian Tharparkar cattle. Gene. 145473. PMID 33549713 DOI: 10.1016/j.gene.2021.145473   
2021 Cumer T, Pouchon C, Boyer F, Yannic G, Rioux D, Bonin A, Capblancq T. Double-digest RAD-sequencing: do pre- and post-sequencing protocol parameters impact biological results? Molecular Genetics and Genomics : Mgg. PMID 33469716 DOI: 10.1007/s00438-020-01756-9   
2021 Bahrami S, Shadrin A, Frei O, O'Connell KS, Bettella F, Krull F, Fan CC, Røssberg JI, Hindley G, Ueland T, Dale AM, Djurovic S, Steen NE, Smeland OB, Andreassen OA. Genetic loci shared between major depression and intelligence with mixed directions of effect. Nature Human Behaviour. PMID 33462475 DOI: 10.1038/s41562-020-01031-2   
2021 Wang YF, Zhang Y, Lin Z, Zhang H, Wang TY, Cao Y, Morris DL, Sheng Y, Yin X, Zhong SL, Gu X, Lei Y, He J, Wu Q, Shen JJ, et al. Identification of 38 novel loci for systemic lupus erythematosus and genetic heterogeneity between ancestral groups. Nature Communications. 12: 772. PMID 33536424 DOI: 10.1038/s41467-021-21049-y   
2021 Hong EP, MacDonald ME, Wheeler VC, Jones L, Holmans P, Orth M, Monckton DG, Long JD, Kwak S, Gusella JF, Lee JM. Huntington's Disease Pathogenesis: Two Sequential Components. Journal of Huntington's Disease. 10: 35-51. PMID 33579862 DOI: 10.3233/JHD-200427   
2021 Liu YC, Peng XX, Lu YB, Wu XX, Chen LW, Feng H. Genome-wide association study reveals the genes associated with the leaf inclusion contents in Chinese medical tree Eucommia ulmoides. Bioscience, Biotechnology, and Biochemistry. 85: 233-241. PMID 33604631 DOI: 10.1093/bbb/zbaa005   
2021 Shabalina T, Yin T, May K, König S. Proofs for genotype by environment interactions considering pedigree and genomic data from organic and conventional cow reference populations. Journal of Dairy Science. PMID 33589254 DOI: 10.3168/jds.2020-19384   
2021 Zhou X, Zhang L, Weng Z, Dill DL, Sidow A. Aquila enables reference-assisted diploid personal genome assembly and comprehensive variant detection based on linked reads. Nature Communications. 12: 1077. PMID 33597536 DOI: 10.1038/s41467-021-21395-x   
2021 Psifidi A, Kranis A, Rothwell LM, Bremner A, Russell K, Robledo D, Bush SJ, Fife M, Hocking PM, Banos G, Hume DA, Kaufman J, Bailey RA, Avendano S, Watson KA, et al. Quantitative trait loci and transcriptome signatures associated with avian heritable resistance to Campylobacter. Scientific Reports. 11: 1623. PMID 33436657 DOI: 10.1038/s41598-020-79005-7   
2021 Kumar D, Sharma S, Sharma R, Pundir S, Singh VK, Chaturvedi D, Singh B, Kumar S, Sharma S. Genome-wide association study in hexaploid wheat identifies novel genomic regions associated with resistance to root lesion nematode (Pratylenchus thornei). Scientific Reports. 11: 3572. PMID 33574377 DOI: 10.1038/s41598-021-80996-0   
2021 Romdhane L, Mezzi N, Dallali H, Messaoud O, Shan J, Fakhro KA, Kefi R, Chouchane L, Abdelhak S. A map of copy number variations in the Tunisian population: a valuable tool for medical genomics in North Africa. Npj Genomic Medicine. 6: 3. PMID 33420067 DOI: 10.1038/s41525-020-00166-5   
2021 Rubinacci S, Ribeiro DM, Hofmeister RJ, Delaneau O. Efficient phasing and imputation of low-coverage sequencing data using large reference panels. Nature Genetics. 53: 120-126. PMID 33414550 DOI: 10.1038/s41588-020-00756-0   
2021 Valliyodan B, Brown AV, Wang J, Patil G, Liu Y, Otyama PI, Nelson RT, Vuong T, Song Q, Musket TA, Wagner R, Marri P, Reddy S, Sessions A, Wu X, et al. Genetic variation among 481 diverse soybean accessions, inferred from genomic re-sequencing. Scientific Data. 8: 50. PMID 33558550 DOI: 10.1038/s41597-021-00834-w