Yingqi Xu, Ph.D. - Publications

Affiliations: 
2006 Pennsylvania State University, State College, PA, United States 
Area:
Computer Science

30 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Wang L, Zhao H, Li J, Xu Y, Lan Y, Yin W, Liu X, Yu L, Lin S, Du MY, Li X, Xiao Y, Zhang Y. Identifying functions and prognostic biomarkers of network motifs marked by diverse chromatin states in human cell lines. Oncogene. PMID 31537905 DOI: 10.1038/s41388-019-1005-1  0.32
2019 Xu Y, Lin S, Zhao H, Wang J, Zhang C, Dong Q, Hu C, Desi S, Wang L, Xu Y. Quantifying Risk Pathway Crosstalk Mediated by miRNA to Screen Precision drugs for Breast Cancer Patients. Genes. 10. PMID 31466383 DOI: 10.3390/genes10090657  0.32
2019 Xu Y, Dong Q, Li F, Xu Y, Hu C, Wang J, Shang D, Zheng X, Yang H, Zhang C, Shao M, Meng M, Xiong Z, Li X, Zhang Y. Identifying subpathway signatures for individualized anticancer drug response by integrating multi-omics data. Journal of Translational Medicine. 17: 255. PMID 31387579 DOI: 10.1186/s12967-019-2010-4  0.32
2019 Li F, Wu T, Xu Y, Dong Q, Xiao J, Xu Y, Li Q, Zhang C, Gao J, Liu L, Hu X, Huang J, Li X, Zhang Y. A comprehensive overview of oncogenic pathways in human cancer. Briefings in Bioinformatics. PMID 31155677 DOI: 10.1093/bib/bbz046  0.32
2018 Gao Y, Wang P, Wang Y, Ma X, Zhi H, Zhou D, Li X, Fang Y, Shen W, Xu Y, Shang S, Wang L, Wang L, Ning S, Li X. Lnc2Cancer v2.0: updated database of experimentally supported long non-coding RNAs in human cancers. Nucleic Acids Research. PMID 30407549 DOI: 10.1093/nar/gky1096  0.32
2018 Wang L, Zhao H, Xu Y, Li J, Deng C, Deng Y, Bai J, Li X, Xiao Y, Zhang Y. Systematic identification of lincRNA-based prognostic biomarkers by integrating lincRNA expression and copy number variation in lung adenocarcinoma. International Journal of Cancer. PMID 30226269 DOI: 10.1002/ijc.31865  0.32
2017 Zhang C, Xu Y, Yang H, Xu Y, Dong Q, Liu S, Wu T, Zhang Y. Integrating gene and lncRNA expression to infer subpathway activity for tumor analyses. Oncotarget. 8: 111433-111443. PMID 29340065 DOI: 10.18632/oncotarget.22811  0.32
2017 Xu Y, Yang H, Wu T, Dong Q, Sun Z, Shang D, Li F, Xu Y, Su F, Liu S, Zhang Y, Li X. BioM2MetDisease: a manually curated database for associations between microRNAs, metabolites, small molecules and metabolic diseases. Database : the Journal of Biological Databases and Curation. 2017. PMID 28605773 DOI: 10.1093/database/bax037  0.32
2017 Xu Y, Li F, Wu T, Xu Y, Yang H, Dong Q, Zheng M, Shang D, Zhang C, Zhang Y, Li X. LncSubpathway: a novel approach for identifying dysfunctional subpathways associated with risk lncRNAs by integrating lncRNA and mRNA expression profiles and pathway topologies. Oncotarget. PMID 28152521 DOI: 10.18632/oncotarget.14973  0.32
2012 Xu Z, Wang Z, Ou J, Xu Y, Yang S, Zhang X. Two monitoring methods of oral anticoagulant therapy in patients with mechanical heart valve prothesis: a meta-analysis. Journal of Thrombosis and Thrombolysis. 33: 38-47. PMID 21877235 DOI: 10.1007/s11239-011-0626-1  0.4
2010 Nudelman I, Akabayov SR, Schnur E, Biron Z, Levy R, Xu Y, Yang D, Anglister J. Intermolecular interactions in a 44 kDa interferon-receptor complex detected by asymmetric reverse-protonation and two-dimensional NOESY. Biochemistry. 49: 5117-33. PMID 20496919 DOI: 10.1021/bi100041f  0.36
2009 Xu Y, Liu M, Simpson PJ, Isaacson R, Cota E, Marchant J, Yang D, Zhang X, Freemont P, Matthews S. Automated assignment in selectively methyl-labeled proteins. Journal of the American Chemical Society. 131: 9480-1. PMID 19534551 DOI: 10.1021/ja9020233  0.4
2007 Snyder DA, Xu Y, Yang D, Brüschweiler R. Resolution-enhanced 4D 15N/13C NOESY protein NMR spectroscopy by application of the covariance transform. Journal of the American Chemical Society. 129: 14126-7. PMID 17973386 DOI: 10.1021/ja075533n  0.36
2007 Xu Y, Long D, Yang D. Rapid data collection for protein structure determination by NMR spectroscopy. Journal of the American Chemical Society. 129: 7722-3. PMID 17536800 DOI: 10.1021/ja071442e  0.36
2007 Chen Q, Niu X, Xu Y, Wu J, Shi Y. Solution structure and backbone dynamics of the AF-6 PDZ domain/Bcr peptide complex. Protein Science : a Publication of the Protein Society. 16: 1053-62. PMID 17473018 DOI: 10.1110/ps.062440607  0.4
2006 Xu Y, Zheng Y, Fan JS, Yang D. A new strategy for structure determination of large proteins in solution without deuteration. Nature Methods. 3: 931-7. PMID 17060917 DOI: 10.1038/nmeth938  0.36
2006 Xu C, Zhang J, Huang X, Sun J, Xu Y, Tang Y, Wu J, Shi Y, Huang Q, Zhang Q. Solution structure of human peptidyl prolyl isomerase-like protein 1 and insights into its interaction with SKIP. The Journal of Biological Chemistry. 281: 15900-8. PMID 16595688 DOI: 10.1074/jbc.M511155200  0.4
2006 Lin Z, Xu Y, Yang S, Yang D. Sequence-specific assignment of aromatic resonances of uniformly 13C,15N-labeled proteins by using 13C- and 15N-edited NOESY spectra. Angewandte Chemie (International Ed. in English). 45: 1960-3. PMID 16506301 DOI: 10.1002/anie.200503558  0.36
2005 Xu Y, Lin Z, Ho C, Yang D. A general strategy for the assignment of aliphatic side-chain resonances of uniformly 13C,15N-labeled large proteins. Journal of the American Chemical Society. 127: 11920-1. PMID 16117513 DOI: 10.1021/ja053539b  0.36
2005 Sui X, Xu Y, Giovannelli JL, Ho NT, Ho C, Yang D. Mapping protein-protein interfaces on the basis of proton density difference. Angewandte Chemie (International Ed. in English). 44: 5141-4. PMID 16035014 DOI: 10.1002/anie.200501209  0.36
2005 Zhang X, Xu Y, Zhang J, Wu J, Shi Y. Structural and dynamic characterization of the acid-unfolded state of hUBF HMG box 1 provides clues for the early events in protein folding. Biochemistry. 44: 8117-25. PMID 15924431 DOI: 10.1021/bi0501939  0.4
2005 Xu C, Zheng P, Shen S, Xu Y, Wei L, Gao H, Wang S, Zhu C, Tang Y, Wu J, Zhang Q, Shi Y. NMR structure and regulated expression in APL cell of human SH3BGRL3. Febs Letters. 579: 2788-94. PMID 15907482 DOI: 10.1016/j.febslet.2005.04.011  0.4
2005 Xu C, Xu Y, Tang Y, Wu J, Shi Y, Huang Q, Zhang Q. Backbone and side chain assignments of human Peptidylprolyl Isomerase Like 1 (hPPIL1). Journal of Biomolecular Nmr. 31: 179-80. PMID 15772761 DOI: 10.1007/s10858-004-8238-0  0.4
2005 Ding H, Xu Y, Chen Q, Dai H, Tang Y, Wu J, Shi Y. Solution structure of human SUMO-3 C47S and its binding surface for Ubc9. Biochemistry. 44: 2790-9. PMID 15723523 DOI: 10.1021/bi0477586  0.4
2005 Zhou H, Xu Y, Yang Y, Huang A, Wu J, Shi Y. Solution structure of AF-6 PDZ domain and its interaction with the C-terminal peptides from Neurexin and Bcr. The Journal of Biological Chemistry. 280: 13841-7. PMID 15684424 DOI: 10.1074/jbc.M411065200  0.4
2005 Wang CG, Cai Z, Lu W, Wu J, Xu Y, Shi Y, Chi CW. A novel short-chain peptide BmKX from the Chinese scorpion Buthus martensi Karsch, sequencing, gene cloning and structure determination. Toxicon : Official Journal of the International Society On Toxinology. 45: 309-19. PMID 15683869 DOI: 10.1016/j.toxicon.2004.11.014  0.4
2004 Dai H, Wu J, Xu Y, Yajun T, Husheng D, Shi Y. 1H, 13C and 15N resonance assignments and the secondary structures of human coactosin like protein (hCLP) D123N. Journal of Biomolecular Nmr. 29: 455-6. PMID 15213466 DOI: 10.1023/B:JNMR.0000032550.18424.aa  0.4
2004 Cai Z, Xu C, Xu Y, Lu W, Chi CW, Shi Y, Wu J. Solution structure of BmBKTx1, a new BKCa1 channel blocker from the Chinese scorpion Buthus martensi Karsch. Biochemistry. 43: 3764-71. PMID 15049683 DOI: 10.1021/bi035412+  0.4
2003 Yang W, Xu Y, Wu J, Zeng W, Shi Y. Solution structure and DNA binding property of the fifth HMG box domain in comparison with the first HMG box domain in human upstream binding factor. Biochemistry. 42: 1930-8. PMID 12590579 DOI: 10.1021/bi026372x  0.4
2002 Xu Y, Yang W, Wu J, Shi Y. Solution structure of the first HMG box domain in human upstream binding factor. Biochemistry. 41: 5415-20. PMID 11969401  0.4
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