Ruchi Chaudhary, Ph.D. - Publications

Affiliations: 
2013 Computer Science Iowa State University, Ames, IA, United States 
Area:
Computer Science

8 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2015 Hinchliff CE, Smith SA, Allman JF, Burleigh JG, Chaudhary R, Coghill LM, Crandall KA, Deng J, Drew BT, Gazis R, Gude K, Hibbett DS, Katz LA, Laughinghouse HD, McTavish EJ, et al. Synthesis of phylogeny and taxonomy into a comprehensive tree of life. Proceedings of the National Academy of Sciences of the United States of America. PMID 26385966 DOI: 10.1073/Pnas.1423041112  0.36
2015 Chaudhary R, Boussau B, Burleigh JG, Fernández-Baca D. Assessing approaches for inferring species trees from multi-copy genes. Systematic Biology. 64: 325-39. PMID 25540456 DOI: 10.1093/Sysbio/Syu128  0.36
2015 Chaudhary R, Fernández-Baca D, Burleigh JG. MulRF: a software package for phylogenetic analysis using multi-copy gene trees. Bioinformatics (Oxford, England). 31: 432-3. PMID 25273112 DOI: 10.1093/Bioinformatics/Btu648  0.36
2013 Chaudhary R, Burleigh JG, Fernández-Baca D. Inferring species trees from incongruent multi-copy gene trees using the Robinson-Foulds distance. Algorithms For Molecular Biology : Amb. 8: 28. PMID 24180377 DOI: 10.1186/1748-7188-8-28  0.36
2012 Chaudhary R, Burleigh JG, Eulenstein O. Efficient error correction algorithms for gene tree reconciliation based on duplication, duplication and loss, and deep coalescence. Bmc Bioinformatics. 13: S11. PMID 22759416 DOI: 10.1186/1471-2105-13-S10-S11  0.36
2012 Chaudhary R, Burleigh JG, Fernández-Baca D. Fast local search for unrooted Robinson-Foulds supertrees. Ieee/Acm Transactions On Computational Biology and Bioinformatics / Ieee, Acm. 9: 1004-13. PMID 22431553 DOI: 10.1109/Tcbb.2012.47  0.36
2011 Chaudhary R, Burleigh JG, Eulenstein O. Algorithms for rapid error correction for the gene duplication problem Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 6674: 227-239. DOI: 10.1007/978-3-642-21260-4_23  0.36
2010 Chaudhary R, Bansal MS, Wehe A, Fernández-Baca D, Eulenstein O. iGTP: a software package for large-scale gene tree parsimony analysis. Bmc Bioinformatics. 11: 574. PMID 21092314 DOI: 10.1186/1471-2105-11-574  0.36
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