Scott A. Tenenbaum - Publications

Affiliations: 
Biomedical Sciences State University of New York, Albany, Albany, NY, United States 
Area:
Bioinformatics Biology, Systematic Biology, Computer Science

50/69 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Mubaid S, Ma JF, Omer A, Ashour K, Lian XJ, Sanchez BJ, Robinson S, Cammas A, Dormoy-Raclet V, Di Marco S, Chittur SV, Tenenbaum SA, Gallouzi IE. HuR counteracts miR-330 to promote STAT3 translation during inflammation-induced muscle wasting. Proceedings of the National Academy of Sciences of the United States of America. PMID 31405989 DOI: 10.1073/pnas.1905172116  0.32
2016 Doyle F, Leonardi A, Endres L, Tenenbaum SA, Dedon PC, Begley TJ. Gene- and Genome-Based Analysis of Significant Codon Patterns in Yeast, Rat and Mice Genomes with the CUT Codon Utilization Tool. Methods (San Diego, Calif.). PMID 27245397 DOI: 10.1016/j.ymeth.2016.05.010  1
2015 Cassar PA, Carpenedo RL, Samavarchi-Tehrani P, Olsen JB, Park CJ, Chang WY, Chen Z, Choey C, Delaney S, Guo H, Guo H, Tanner RM, Perkins TJ, Tenenbaum SA, Emili A, et al. Integrative genomics positions MKRN1 as a novel ribonucleoprotein within the embryonic stem cell gene regulatory network. Embo Reports. 16: 1334-57. PMID 26265008 DOI: 10.15252/embr.201540974  1
2015 Schmidt SA, Foley PL, Jeong DH, Rymarquis LA, Doyle F, Tenenbaum SA, Belasco JG, Green PJ. Identification of SMG6 cleavage sites and a preferred RNA cleavage motif by global analysis of endogenous NMD targets in human cells. Nucleic Acids Research. 43: 309-23. PMID 25429978 DOI: 10.1093/nar/gku1258  1
2014 Stephenson W, Wan G, Tenenbaum SA, Li PT. Nanomanipulation of single RNA molecules by optical tweezers. Journal of Visualized Experiments : Jove. PMID 25177917 DOI: 10.3791/51542  1
2014 Doyle F, Tenenbaum SA. Trans-regulation of RNA-binding protein motifs by microRNA. Frontiers in Genetics. 5: 79. PMID 24795744 DOI: 10.3389/fgene.2014.00079  1
2014 Stephenson W, Keller S, Santiago R, Albrecht JE, Asare-Okai PN, Tenenbaum SA, Zuker M, Li PT. Combining temperature and force to study folding of an RNA hairpin. Physical Chemistry Chemical Physics : Pccp. 16: 906-17. PMID 24276015 DOI: 10.1039/c3cp52042k  1
2014 Jayaseelan S, Doyle F, Tenenbaum SA. Profiling post-transcriptionally networked mRNA subsets using RIP-Chip and RIP-Seq. Methods (San Diego, Calif.). 67: 13-9. PMID 24257445 DOI: 10.1016/j.ymeth.2013.11.001  1
2014 Gottipati A, Keith JH, Nedumthakady N, Begley T, Tenenbaum SA. Diameter dependent degradation of single walled carbon nanotubes Proceedings of the Ieee Annual Northeast Bioengineering Conference, Nebec. 2014. DOI: 10.1109/NEBEC.2014.6972801  1
2013 Stephenson W, Asare-Okai PN, Chen AA, Keller S, Santiago R, Tenenbaum SA, Garcia AE, Fabris D, Li PT. The essential role of stacking adenines in a two-base-pair RNA kissing complex. Journal of the American Chemical Society. 135: 5602-11. PMID 23517345 DOI: 10.1021/ja310820h  1
2013 Scavelli A, Gottipati A, Comfort E, Jayaseelan S, Murray T, Rizzolo M, Tenenbaum S, Lee JU. Single cell in-vivo carbon nanotube device with multimodal sensing potential Aip Advances. 3. DOI: 10.1063/1.4795408  1
2012 Jayaseelan S, Tenenbaum SA. Neurodevelopmental disorders: Signalling pathways of fragile X syndrome. Nature. 492: 359-60. PMID 23235826 DOI: 10.1038/nature11764  1
2012 Kusek G, Campbell M, Doyle F, Tenenbaum SA, Kiebler M, Temple S. Asymmetric segregation of the double-stranded RNA binding protein Staufen2 during mammalian neural stem cell divisions promotes lineage progression. Cell Stem Cell. 11: 505-16. PMID 22902295 DOI: 10.1016/j.stem.2012.06.006  1
2012 Lin Y, Li Z, Ozsolak F, Kim SW, Arango-Argoty G, Liu TT, Tenenbaum SA, Bailey T, Monaghan AP, Milos PM, John B. An in-depth map of polyadenylation sites in cancer. Nucleic Acids Research. 40: 8460-71. PMID 22753024 DOI: 10.1093/nar/gks637  1
2012 Lapidus KA, Nwokafor C, Scott D, Baroni TE, Tenenbaum SA, Hiroi N, Singer RH, Czaplinski K. Transgenic expression of ZBP1 in neurons suppresses cocaine-associated conditioning. Learning & Memory (Cold Spring Harbor, N.Y.). 19: 35-42. PMID 22240322 DOI: 10.1101/lm.024471.111  1
2012 Perrotti M, Jain R, Abriel LM, Baroni TE, Corbett AB, Tenenbaum SA. Dutasteride monotherapy in men with serologic relapse following radical therapy for adenocarcinoma of the prostate: a pilot study. Urologic Oncology. 30: 133-8. PMID 20800512 DOI: 10.1016/j.urolonc.2010.01.004  1
2011 Shukla GC, Haque F, Tor Y, Wilhelmsson LM, Toulmé JJ, Isambert H, Guo P, Rossi JJ, Tenenbaum SA, Shapiro BA. A boost for the emerging field of RNA nanotechnology. Acs Nano. 5: 3405-18. PMID 21604810 DOI: 10.1021/nn200989r  1
2011 Jayaseelan S, Doyle F, Currenti S, Tenenbaum SA. RIP: an mRNA localization technique. Methods in Molecular Biology (Clifton, N.J.). 714: 407-22. PMID 21431755 DOI: 10.1007/978-1-61779-005-8_25  1
2011 Jain R, Devine T, George AD, Chittur SV, Baroni TE, Penalva LO, Tenenbaum SA. RIP-Chip analysis: RNA-Binding Protein Immunoprecipitation-Microarray (Chip) Profiling. Methods in Molecular Biology (Clifton, N.J.). 703: 247-63. PMID 21125495 DOI: 10.1007/978-1-59745-248-9_17  1
2011 Tenenbaum SA, Christiansen J, Nielsen H. The post-transcriptional operon. Methods in Molecular Biology (Clifton, N.J.). 703: 237-45. PMID 21125494 DOI: 10.1007/978-1-59745-248-9_16  1
2011 George AD, Tenenbaum SA. Web-based tools for studying RNA structure and function. Methods in Molecular Biology (Clifton, N.J.). 703: 67-86. PMID 21125484 DOI: 10.1007/978-1-59745-248-9_6  1
2010 Jain R, Doyle F, George AD, Kuentzel M, Frank D, Chittur SV, Tenenbaum SA. RIP-CHIP in drug development. Methods in Molecular Biology (Clifton, N.J.). 632: 159-71. PMID 20217577 DOI: 10.1007/978-1-60761-663-4_10  1
2009 George AD, Tenenbaum SA. Informatic resources for identifying and annotating structural RNA motifs. Molecular Biotechnology. 41: 180-93. PMID 18979204 DOI: 10.1007/s12033-008-9114-z  1
2008 Baroni TE, Chittur SV, George AD, Tenenbaum SA. Advances in RIP-chip analysis : RNA-binding protein immunoprecipitation-microarray profiling. Methods in Molecular Biology (Clifton, N.J.). 419: 93-108. PMID 18369977 DOI: 10.1007/978-1-59745-033-1_6  1
2008 Doyle F, Zaleski C, George AD, Stenson EK, Ricciardi A, Tenenbaum SA. Bioinformatic tools for studying post-transcriptional gene regulation : The UAlbany TUTR collection and other informatic resources. Methods in Molecular Biology (Clifton, N.J.). 419: 39-52. PMID 18369974 DOI: 10.1007/978-1-59745-033-1_3  1
2008 Stoecklin G, Tenenbaum SA, Mayo T, Chittur SV, George AD, Baroni TE, Blackshear PJ, Anderson P. Genome-wide analysis identifies interleukin-10 mRNA as target of tristetraprolin. The Journal of Biological Chemistry. 283: 11689-99. PMID 18256032 DOI: 10.1074/jbc.M709657200  1
2008 Mazroui R, Di Marco S, Clair E, von Roretz C, Tenenbaum SA, Keene JD, Saleh M, Gallouzi IE. Caspase-mediated cleavage of HuR in the cytoplasm contributes to pp32/PHAP-I regulation of apoptosis. The Journal of Cell Biology. 180: 113-27. PMID 18180367 DOI: 10.1083/jcb.200709030  1
2007 Baroni TE, Lastro MT, Ranganathan AC, Tenenbaum SA, Conklin DS, Aguirre-Ghiso JA. Ribonomic and short hairpin RNA gene silencing methods to explore functional gene programs associated with tumor growth arrest. Methods in Molecular Biology (Clifton, N.J.). 383: 227-44. PMID 18217689 DOI: 10.1007/978-1-59745-335-6_15  1
2006 George AD, Tenenbaum SA. MicroRNA modulation of RNA-binding protein regulatory elements. Rna Biology. 3: 57-9. PMID 17114943  1
2005 Tenenbaum SA, Aguirre-Ghiso J. Dephosphorylation shows SR proteins the way out. Molecular Cell. 20: 499-501. PMID 16307914 DOI: 10.1016/j.molcel.2005.11.005  1
2005 Sander DM, Szabo S, Gallaher WR, Deas JE, Thompson JJ, Cao Y, Luo-Zhang H, Liu LG, Colmegna I, Koehler J, Espinoza LR, Alexander SS, Hart DJ, Tom DM, Fermin CD, ... ... Tenenbaum SA, et al. Involvement of human intracisternal A-type retroviral particles in autoimmunity. Microscopy Research and Technique. 68: 222-34. PMID 16276517 DOI: 10.1002/jemt.20234  1
2005 Tenenbaum SA, Morris CA, Alexander SS, McFerrin HE, Garry RF, Leissinger CA. Evidence of HIV exposure and transient seroreactivity in archived HIV-negative severe hemophiliac sera. Virology Journal. 2: 65. PMID 16107217 DOI: 10.1186/1743-422X-2-65  1
2005 Di Marco S, Mazroui R, Dallaire P, Chittur S, Tenenbaum SA, Radzioch D, Marette A, Gallouzi IE. NF-kappa B-mediated MyoD decay during muscle wasting requires nitric oxide synthase mRNA stabilization, HuR protein, and nitric oxide release. Molecular and Cellular Biology. 25: 6533-45. PMID 16024790 DOI: 10.1128/MCB.25.15.6533-6545.2005  1
2004 Penalva LO, Tenenbaum SA, Keene JD. Gene expression analysis of messenger RNP complexes. Methods in Molecular Biology (Clifton, N.J.). 257: 125-34. PMID 14770002 DOI: 10.1385/1-59259-750-5:125  1
2003 Intine RV, Tenenbaum SA, Sakulich AL, Keene JD, Maraia RJ. Differential phosphorylation and subcellular localization of La RNPs associated with precursor tRNAs and translation-related mRNAs. Molecular Cell. 12: 1301-7. PMID 14636586 DOI: 10.1016/S1097-2765(03)00429-5  1
2003 Tenenbaum SA, Carson CC, Atasoy U, Keene JD. Genome-wide regulatory analysis using en masse nuclear run-ons and ribonomic profiling with autoimmune sera. Gene. 317: 79-87. PMID 14604794 DOI: 10.1016/S0378-1119(03)00661-9  1
2002 Keene JD, Tenenbaum SA. Eukaryotic mRNPs may represent posttranscriptional operons. Molecular Cell. 9: 1161-7. PMID 12086614 DOI: 10.1016/S1097-2765(02)00559-2  1
2002 Tenenbaum SA, Lager PJ, Carson CC, Keene JD. Ribonomics: identifying mRNA subsets in mRNP complexes using antibodies to RNA-binding proteins and genomic arrays. Methods (San Diego, Calif.). 26: 191-8. PMID 12054896 DOI: 10.1016/S1046-2023(02)00022-1  1
2002 Eystathioy T, Chan EK, Tenenbaum SA, Keene JD, Griffith K, Fritzler MJ. A phosphorylated cytoplasmic autoantigen, GW182, associates with a unique population of human mRNAs within novel cytoplasmic speckles. Molecular Biology of the Cell. 13: 1338-51. PMID 11950943 DOI: 10.1091/mbc.01-11-0544  1
2001 Brown V, Jin P, Ceman S, Darnell JC, O'Donnell WT, Tenenbaum SA, Jin X, Feng Y, Wilkinson KD, Keene JD, Darnell RB, Warren ST. Microarray identification of FMRP-associated brain mRNAs and altered mRNA translational profiles in fragile X syndrome. Cell. 107: 477-87. PMID 11719188 DOI: 10.1016/S0092-8674(01)00568-2  1
2000 Tenenbaum SA, Carson CC, Lager PJ, Keene JD. Identifying mRNA subsets in messenger ribonucleoprotein complexes by using cDNA arrays. Proceedings of the National Academy of Sciences of the United States of America. 97: 14085-90. PMID 11121017 DOI: 10.1073/pnas.97.26.14085  1
1997 Edlavitch SA, Lamm SH, Everson MP, Blackburn W.D. J, Korn JH, Angell M, Tenenbaum SA, Rice JC, Espinoza LR, Garry RF, Ellis TM, Hardt NS, Atkinson MA. Antipolymer antibodies, silicone breast implants, and fibromyalgia (multiple letters) [9] Lancet. 349: 1170-1173. PMID 9113027  1
1997 Tenenbaum SA, Rice JC, Espinoza LR, Cuéllar ML, Plymale DR, Sander DM, Williamson LL, Haislip AM, Gluck OS, Tesser JR. Use of antipolymer antibody assay in recipients of silicone breast implants. Lancet. 349: 449-54. PMID 9040573 DOI: 10.1016/S0140-6736(96)07131-0  1
1997 Scandurro AB, Rondon IJ, Wilson RB, Tenenbaum SA, Garry RF, Beckman BS. Interaction of erythropoietin RNA binding protein with erythropoietin RNA requires an association with heat shock protein 70. Kidney International. 51: 579-84. PMID 9027743  1
1996 Chiang CF, Tenenbaum SA, Verret CR, Leissinger CA, Garry RF. Activity of granzyme A, a serine protease in the killing granules of cytotoxic T lymphocytes, is reduced in cells from HIV-infected hemophiliacs. Aids Research and Human Retroviruses. 12: 235-9. PMID 8835202 DOI: 10.1089/aid.1996.12.235  1
1995 Cuéllar ML, Scopelitis E, Tenenbaum SA, Garry RF, Silveira LH, Cabrera G, Espinoza LR. Serum antinuclear antibodies in women with silicone breast implants. The Journal of Rheumatology. 22: 236-40. PMID 7738944  1
1994 Tenenbaum SA, Voss TG, Garry RF, Gallaher WR. Sequence similarities between retroviral proteins and components of the spliceosome. Aids Research and Human Retroviruses. 10: 521-2. PMID 7917513 DOI: 10.1089/aid.1994.10.521  1
1993 Tenenbaum SA, Leissinger CA, Garry RF. Absence of seroconversion of HIV-1 antibody in seroreactive individuals. Jama. 270: 2178-9. PMID 8292159 DOI: 10.1001/jama.1993.03510180048022  1
1992 Garry RF, Hart DJ, Tenenbaum SA, Luo-Zhang H, Breeding SA, Alexander SS. Sjögren's syndrome and assays for retroviral proteins: reply Arthritis and Rheumatism. 35: 1405. PMID 1445467  1
1992 Meilof JF, Arentsen H, Kruize AA, Hene RJ, Bijlsma JWJ, Van der Poel CL, Smeenk RJT, Huisman JG, Garry RF, Hart DJ, Tenenbaum SA, Luo-Zhang H, Breeding SAL, Alexander SS, Dang H, et al. Sjogren's syndrome and retroviral infection [3] Arthritis and Rheumatism. 35: 1403-1406. PMID 1332725  1
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2020 Muralidharan-Chari V, Wurz Z, Doyle F, Henry M, Diendorfer A, Tenenbaum SA, Borth N, Eveleth E, Sharfstein ST. PTSelect™: A post-transcriptional technology that enables rapid establishment of stable CHO cell lines and surveillance of clonal variation. Journal of Biotechnology. PMID 33115662 DOI: 10.1016/j.jbiotec.2020.09.025  0.28
2018 Li X, Burton EM, Koganti S, Zhi J, Doyle F, Tenenbaum SA, Horn B, Bhaduri-McIntosh S. KRAB-ZFP repressors enforce quiescence of oncogenic human herpesviruses. Journal of Virology. PMID 29695433 DOI: 10.1128/JVI.00298-18  0.28
2017 Huang K, Doyle F, Wurz ZE, Tenenbaum SA, Hammond RK, Caplan JL, Meyers BC. FASTmiR: an RNA-based sensor for in vitro quantification and live-cell localization of small RNAs. Nucleic Acids Research. PMID 28586459 DOI: 10.1093/nar/gkx504  0.28
2017 Doyle F, Lapsia S, Spadaro S, Wurz ZE, Bhaduri-McIntosh S, Tenenbaum SA. Engineering Structurally Interacting RNA (sxRNA). Scientific Reports. 7: 45393. PMID 28350000 DOI: 10.1038/srep45393  0.28
2013 Stephenson WT, Santiago R, Keller S, Tenenbaum S, Zuker M, Li PT. Combining Temperature and Force to Study Folding of Single RNA Molecules Biophysical Journal. 104: 412a. DOI: 10.1016/j.bpj.2012.11.2296  0.12
1986 Mahmood T, Tenenbaum S, Niu XT, Levenson SM, Seifter E, Demetriou AA. Prevention of duodenal ulcer formation in the rat by dietary vitamin A supplementation. Jpen. Journal of Parenteral and Enteral Nutrition. 10: 74-7. PMID 3945046 DOI: 10.1177/014860718601000174  0.04
2020 Chandrasekaran A, Lee MY, Zhang X, Hasan S, Desta H, Tenenbaum SA, Melendez JA. Redox and mTOR-dependent regulation of plasma lamellar calcium influx controls the senescence-associated secretory phenotype. Experimental Biology and Medicine (Maywood, N.J.). 1535370220943122. PMID 32686475 DOI: 10.1177/1535370220943122  0.01
2019 Almehmadi LM, Curley SM, Tokranova NA, Tenenbaum SA, Lednev IK. Surface Enhanced Raman Spectroscopy for Single Molecule Protein Detection. Scientific Reports. 9: 12356. PMID 31451702 DOI: 10.1038/s41598-019-48650-y  0.01
2015 Iuliano JN, Kutscha PD, Biderman NJ, Subbaram S, Groves TR, Tenenbaum SA, Hempel N. Metastatic bladder cancer cells distinctively sense and respond to physical cues of collagen fibril-mimetic nanotopography. Experimental Biology and Medicine (Maywood, N.J.). 240: 601-10. PMID 25465204 DOI: 10.1177/1535370214560973  0.01
2015 Bariteau JT, Murillo DM, Tenenbaum SA, Brodsky JW. Joint salvage after neglected intra-articular physeal fracture of the hallux in high-level gymnasts. Foot & Ankle Specialist. 8: 130-4. PMID 25037957 DOI: 10.1177/1938640014543359  0.01
2014 Nicolini C. Fabrication of carbon fullerene based hard disk unit Journal of Nanomedicine & Nanotechnology. 5. DOI: 10.4172/2157-7439.S1.017  0.01
2014 Stephenson W, Asare-Okai PN, Tenenbaum S, Fabris D, Li PT. Comparing RNA Kissing Interactions at Single-Molecule and Ensemble Levels Biophysical Journal. 106: 283a-284a. DOI: 10.1016/j.bpj.2013.11.1659  0.01
2014 Stephenson WT, Keller S, Tenenbaum SA, Zuker M, Li PT. Structural Polymorphism of (Cag)N Repeat RNA Elucidated using Single Molecule Nanomanipulation Biophysical Journal. 106: 282a. DOI: 10.1016/J.BPJ.2013.11.1653  0.01
2013 Stephenson W, Asare-Okai PN, Chen AA, Tenenbaum S, Garcia AE, Fabris D, Li PT. 41 The essential adenosine stacking in a two-base-pair minimal kissing complex Journal of Biomolecular Structure and Dynamics. 31: 25-25. DOI: 10.1080/07391102.2013.786474  0.01
2013 Stephenson W, Santiago R, Keller S, Tenenbaum S, Zuker M, Li PT. 40 Probing single molecule RNA folding using temperature and force Journal of Biomolecular Structure and Dynamics. 31: 24-25. DOI: 10.1080/07391102.2013.786473  0.01
2013 Li PT, Stephenson W, Nii Asare-Okai P, Chen AA, Tenenbaum S, Garcia AE, Fabris D. The Essential Adenosine Stacking in a Two-Base-Pair Minimal Kissing Complex Biophysical Journal. 104: 411a. DOI: 10.1016/j.bpj.2012.11.2289  0.01
2012 Gottipati A, Sanders JM, Tenenbaum SA. Nanobioscience: The future of personalised medicine Drug Discovery World. 13: 81-86.  0.01
2011 . A user's guide to the encyclopedia of DNA elements (ENCODE). Plos Biology. 9: e1001046. PMID 21526222 DOI: 10.1371/journal.pbio.1001046  0.01
1997 Tenenbaum SA, Garry RF. Silicone breast implants and antipolymer antibodies The Lancet. 350: 740-741. DOI: 10.1016/S0140-6736(05)63550-7  0.01
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