Graciela Gonzalez - Publications

Computer Science Arizona State University, Tempe, AZ, United States 
Computer Science, Bioinformatics Biology

32 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2017 Emadzadeh E, Sarker A, Nikfarjam A, Gonzalez G. Hybrid Semantic Analysis for Mapping Adverse Drug Reaction Mentions in Tweets to Medical Terminology. Amia ... Annual Symposium Proceedings. Amia Symposium. 2017: 679-688. PMID 29854133  0.52
2015 Gonzalez GH, Tahsin T, Goodale BC, Greene AC, Greene CS. Recent Advances and Emerging Applications in Text and Data Mining for Biomedical Discovery. Briefings in Bioinformatics. PMID 26420781 DOI: 10.1093/Bib/Bbv087  0.92
2015 Weissenbacher D, Tahsin T, Beard R, Figaro M, Rivera R, Scotch M, Gonzalez G. Knowledge-driven geospatial location resolution for phylogeographic models of virus migration. Bioinformatics (Oxford, England). 31: i348-56. PMID 26072502 DOI: 10.1093/Bioinformatics/Btv259  0.92
2015 Nikfarjam A, Sarker A, O'Connor K, Ginn R, Gonzalez G. Pharmacovigilance from social media: mining adverse drug reaction mentions using sequence labeling with word embedding cluster features. Journal of the American Medical Informatics Association : Jamia. 22: 671-81. PMID 25755127 DOI: 10.1093/Jamia/Ocu041  0.92
2015 Sarker A, Ginn R, Nikfarjam A, O'Connor K, Smith K, Jayaraman S, Upadhaya T, Gonzalez G. Utilizing social media data for pharmacovigilance: A review. Journal of Biomedical Informatics. 54: 202-12. PMID 25720841 DOI: 10.1016/J.Jbi.2015.02.004  0.92
2015 Sarker A, Gonzalez G. Portable automatic text classification for adverse drug reaction detection via multi-corpus training. Journal of Biomedical Informatics. 53: 196-207. PMID 25451103 DOI: 10.1016/J.Jbi.2014.11.002  0.92
2014 O'Connor K, Pimpalkhute P, Nikfarjam A, Ginn R, Smith KL, Gonzalez G. Pharmacovigilance on twitter? Mining tweets for adverse drug reactions. Amia ... Annual Symposium Proceedings / Amia Symposium. Amia Symposium. 2014: 924-33. PMID 25954400  0.92
2014 Emadzadeh E, Nikfarjam A, Ginn RE, Gonzalez G. Unsupervised gene function extraction using semantic vectors. Database : the Journal of Biological Databases and Curation. 2014. PMID 25209025 DOI: 10.1093/Database/Bau084  0.52
2014 Mao Y, Van Auken K, Li D, Arighi CN, McQuilton P, Hayman GT, Tweedie S, Schaeffer ML, Laulederkind SJ, Wang SJ, Gobeill J, Ruch P, Luu AT, Kim JJ, Chiang JH, ... ... Gonzalez G, et al. Overview of the gene ontology task at BioCreative IV. Database : the Journal of Biological Databases and Curation. 2014. PMID 25157073 DOI: 10.1093/Database/Bau086  0.52
2013 Nikfarjam A, Emadzadeh E, Gonzalez G. Towards generating a patient's timeline: extracting temporal relationships from clinical notes. Journal of Biomedical Informatics. 46: S40-7. PMID 24212118 DOI: 10.1016/J.Jbi.2013.11.001  0.52
2013 Jonnalagadda S, Cohen T, Wu S, Liu H, Gonzalez G. Using empirically constructed lexical resources for named entity recognition. Biomedical Informatics Insights. 6: 17-27. PMID 23847424 DOI: 10.4137/BII.S11664  0.92
2012 Nikfarjam A, Emadzadeh E, Gonzalez G. A hybrid system for emotion extraction from suicide notes. Biomedical Informatics Insights. 5: 165-74. PMID 22879773 DOI: 10.4137/BII.S8981  0.52
2012 Jonnalagadda S, Cohen T, Wu S, Gonzalez G. Enhancing clinical concept extraction with distributional semantics. Journal of Biomedical Informatics. 45: 129-40. PMID 22085698 DOI: 10.1016/J.Jbi.2011.10.007  0.92
2012 Tari L, Tu PH, Hakenberg J, Chen Y, Son TC, Gonzalez G, Baral C. Incremental information extraction using relational databases Ieee Transactions On Knowledge and Data Engineering. 24: 86-99. DOI: 10.1109/Tkde.2010.214  0.92
2011 Krallinger M, Vazquez M, Leitner F, Salgado D, Chatr-Aryamontri A, Winter A, Perfetto L, Briganti L, Licata L, Iannuccelli M, Castagnoli L, Cesareni G, Tyers M, Schneider G, Rinaldi F, ... ... Gonzalez G, et al. The Protein-Protein Interaction tasks of BioCreative III: classification/ranking of articles and linking bio-ontology concepts to full text. Bmc Bioinformatics. 12: S3. PMID 22151929 DOI: 10.1186/1471-2105-12-S8-S3  0.92
2011 Hakenberg J, Gerner M, Haeussler M, Solt I, Plake C, Schroeder M, Gonzalez G, Nenadic G, Bergman CM. The GNAT library for local and remote gene mention normalization. Bioinformatics (Oxford, England). 27: 2769-71. PMID 21813477 DOI: 10.1093/Bioinformatics/Btr455  0.92
2011 Scotch M, Sarkar IN, Mei C, Leaman R, Cheung KH, Ortiz P, Singraur A, Gonzalez G. Enhancing phylogeography by improving geographical information from GenBank. Journal of Biomedical Informatics. 44: S44-7. PMID 21723960 DOI: 10.1016/J.Jbi.2011.06.005  0.92
2011 Emadzadeh E, Jonnalagadda S, Gonzalez G. Evaluating distributional semantic and feature selection for extracting relationships from biological text Proceedings - 10th International Conference On Machine Learning and Applications, Icmla 2011. 2: 66-71. DOI: 10.1109/ICMLA.2011.65  0.92
2011 Sullivan R, Leaman R, Gonzalez G. The DIEGO Lab graph based gene normalization system Proceedings - 10th International Conference On Machine Learning and Applications, Icmla 2011. 2: 78-83. DOI: 10.1109/ICMLA.2011.140  0.92
2010 Jonnalagadda S, Gonzalez G. BioSimplify: an open source sentence simplification engine to improve recall in automatic biomedical information extraction. Amia ... Annual Symposium Proceedings / Amia Symposium. Amia Symposium. 2010: 351-5. PMID 21346999  0.92
2010 Hakenberg J, Leaman R, Vo NH, Jonnalagadda S, Sullivan R, Miller C, Tari L, Baral C, Gonzalez G. Efficient extraction of protein-protein interactions from full-text articles. Ieee/Acm Transactions On Computational Biology and Bioinformatics / Ieee, Acm. 7: 481-94. PMID 20498514 DOI: 10.1109/Tcbb.2010.51  0.92
2010 Tari L, Tu PH, Hakenberg J, Chen Y, Son TC, Gonzalez G, Baral C. GenerIE: Information extraction using database queries Proceedings - International Conference On Data Engineering. 1121-1124. DOI: 10.1109/ICDE.2010.5447773  0.92
2010 Jonnalagadda S, Leaman R, Cohen T, Gonzalez G. A distributional semantics approach to simultaneous recognition of multiple classes of named entities Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 6008: 224-235. DOI: 10.1007/978-3-642-12116-6_19  0.92
2009 Tari L, Hakenberg J, Gonzalez G, Baral C. Querying parse tree database of Medline text to synthesize user-specific biomolecular networks. Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 87-98. PMID 19209697  0.92
2009 Jonnalagadda S, Topham P, Gonzalez G. Towards automatic extraction of social networks of organizations in pub-med abstracts Proceedings - 2009 Ieee International Conference On Bioinformatics and Biomedicine Workshops, Bibmw 2009. 279-286. DOI: 10.1109/BIBMW.2009.5332108  0.92
2008 Hakenberg J, Plake C, Leaman R, Schroeder M, Gonzalez G. Inter-species normalization of gene mentions with GNAT. Bioinformatics (Oxford, England). 24: i126-132. PMID 18689813 DOI: 10.1093/bioinformatics/btn299  0.92
2008 Leaman R, Gonzalez G. BANNER: an executable survey of advances in biomedical named entity recognition. Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 652-63. PMID 18229723  0.92
2007 Gonzalez G, Uribe JC, Tari L, Brophy C, Baral C. Mining gene-disease relationships from biomedical literature: weighting protein-protein interactions and connectivity measures. Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 28-39. PMID 17992743  0.92
2007 Gonzalez G. A systematic approach to active and cooperative learning in CS1 and its effects on CS2 Proceedings of the Thirty-Seventh Sigcse Technical Symposium On Computer Science Education. 133-137. DOI: 10.1145/1121341.1121386  0.92
2005 González G, Baral C, Gelfond M. Alan: An action language for modelling non-Markovian domains Studia Logica. 79: 115-134. DOI: 10.1007/S11225-005-0498-5  0.92
1998 Baral C, Gonzalez G, Nandigam A. SQL+D: Extended display capabilities for multimedia database queries Proceedings of the 6th Acm International Conference On Multimedia, Multimedia 1998. 109-114. DOI: 10.1145/290747.290761  0.92
1998 Baral C, Gonzalez G, Son T. Conceptual Modeling and Querying in Multimedia Databases Multimedia Tools and Applications. 23: 37-66. DOI: 10.1023/A:1009670119569  0.92
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