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Ananth Kalyanaraman - Publications

Affiliations: 
Computer Science Washington State University, Pullman, WA, United States 
Area:
Computer Science, Bioinformatics Biology
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36 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Kamruzzaman M, Kalyanaraman A, Krishnamoorthy B, Hey S, Schnable P. Hyppo-X: A Scalable Exploratory Framework for Analyzing Complex Phenomics Data. Ieee/Acm Transactions On Computational Biology and Bioinformatics. PMID 31647442 DOI: 10.1109/Tcbb.2019.2947500  0.32
2018 Abnousi A, Broschat SL, Kalyanaraman A. Alignment-free clustering of large data sets of unannotated protein conserved regions using minhashing. Bmc Bioinformatics. 19: 83. PMID 29506470 DOI: 10.1186/S12859-018-2080-Y  0.392
2018 Kalyanaraman A, Halappanavar M. Guest Editorial: Advances in Parallel Graph Processing: Algorithms, Architectures, and Application Frameworks Ieee Transactions On Multi-Scale Computing Systems. 4: 188-189. DOI: 10.1109/TMSCS.2018.2858297  0.312
2017 Pesantez PG, Kalyanaraman A. Efficient Detection of Communities in Biological Bipartite Networks. Ieee/Acm Transactions On Computational Biology and Bioinformatics. PMID 29990252 DOI: 10.1109/Tcbb.2017.2765319  0.372
2017 Ghosh P, Kalyanaraman A. FastEtch: A Fast Sketch-based Assembler for Genomes. Ieee/Acm Transactions On Computational Biology and Bioinformatics. PMID 28910776 DOI: 10.1109/Tcbb.2017.2737999  0.402
2017 Lu H, Halappanavar M, Chavarria-Miranda D, Gebremedhin AH, Panyala A, Kalyanaraman A. Algorithms for Balanced Graph Colorings with Applications in Parallel Computing Ieee Transactions On Parallel and Distributed Systems. 28: 1240-1256. DOI: 10.1109/Tpds.2016.2620142  0.383
2016 Abnousi A, Broschat SL, Kalyanaraman A. A Fast Alignment-Free Approach for De Novo Detection of Protein Conserved Regions. Plos One. 11: e0161338. PMID 27552220 DOI: 10.1371/Journal.Pone.0161338  0.317
2016 Sharpe RM, Koepke T, Harper A, Grimes J, Galli M, Satoh-Cruz M, Kalyanaraman A, Evans K, Kramer D, Dhingra A. CisSERS: Customizable In Silico Sequence Evaluation for Restriction Sites. Plos One. 11: e0152404. PMID 27071032 DOI: 10.1371/Journal.Pone.0152404  0.321
2016 Duraisamy K, Lu H, Pande PP, Kalyanaraman A. High-Performance and Energy-Efficient Network-on-Chip Architectures for Graph Analytics Acm Transactions On Embedded Computing Systems. 15: 1-26. DOI: 10.1145/2961027  0.41
2016 Wu T, Arash Nezam Sarmadi S, Venkatasubramanian V, Pothen A, Kalyanaraman A. Fast SVD Computations for Synchrophasor Algorithms Ieee Transactions On Power Systems. 31: 1651-1652. DOI: 10.1109/Tpwrs.2015.2412679  0.333
2015 Lu H, Halappanavar M, Chavarria-Miranda D, Gebremedhin A, Kalyanaraman A. Balanced Coloring for Parallel Computing Applications Proceedings - 2015 Ieee 29th International Parallel and Distributed Processing Symposium, Ipdps 2015. 7-16. DOI: 10.1109/IPDPS.2015.113  0.303
2015 Duraisamy K, Lu H, Pande PP, Kalyanaraman A. High performance and energy efficient wireless NoC-enabled multicore architectures for graph analytics 2015 International Conference On Compilers, Architecture and Synthesis For Embedded Systems, Cases 2015. 147-156. DOI: 10.1109/CASES.2015.7324555  0.316
2015 Daily J, Kalyanaraman A, Krishnamoorthy S, Vishnu A. A work stealing based approach for enabling scalable optimal sequence homology detection Journal of Parallel and Distributed Computing. 79: 132-142. DOI: 10.1016/J.Jpdc.2014.08.009  0.354
2014 Rytsareva I, Chapman T, Kalyanaraman A. Parallel algorithms for clustering biological graphs on distributed and shared memory architectures International Journal of High Performance Computing and Networking. 7: 241-257. DOI: 10.1504/IJHPCN.2014.062724  0.676
2014 Majumder T, Pande PP, Kalyanaraman A. Hardware accelerators in computational biology: Application, potential, and challenges Ieee Design and Test. 31: 8-18. DOI: 10.1109/Mdat.2013.2290118  0.335
2014 Majumder T, Pande PP, Kalyanaraman A. Wireless NoC platforms with dynamic task allocation for maximum likelihood phylogeny reconstruction Ieee Design and Test. 31: 54-64. DOI: 10.1109/Mdat.2013.2288778  0.305
2014 Chavarria-Miranda D, Halappanavar M, Kalyanaraman A. Scaling graph community detection on the Tilera many-core architecture 2014 21st International Conference On High Performance Computing, Hipc 2014. DOI: 10.1109/HiPC.2014.7116708  0.348
2013 Wu C, Kalyanaraman A. GPU-Accelerated protein family identification for metagenomics Proceedings - Ieee 27th International Parallel and Distributed Processing Symposium Workshops and Phd Forum, Ipdpsw 2013. 559-568. DOI: 10.1109/IPDPSW.2013.185  0.599
2013 Rytsareva I, Kalyanaraman A, Konwar K, Hallam SJ. Scalable heuristics for clustering biological graphs 2013 Ieee 3rd International Conference On Computational Advances in Bio and Medical Sciences, Iccabs 2013. DOI: 10.1109/ICCABS.2013.6629214  0.669
2013 Majumder T, Pande PP, Kalyanaraman A. High-throughput, energy-efficient network-on-chip-based hardware accelerators Sustainable Computing: Informatics and Systems. 3: 36-46. DOI: 10.1016/J.Suscom.2013.01.001  0.328
2012 Rytsareva I, Le Q, Conner E, Kalyanaraman A, Panchal JH. Evaluating socio-Technical coordination in open-source communities: A cluster-based approach Proceedings of the Asme Design Engineering Technical Conference. 2: 277-286. DOI: 10.1115/DETC2012-70604  0.64
2012 Wu C, Kalyanaraman A, Cannon WR. PGraph: Efficient parallel construction of large-scale protein sequence homology graphs Ieee Transactions On Parallel and Distributed Systems. 23: 1923-1933. DOI: 10.1109/Tpds.2012.19  0.597
2012 Majumder T, Borgens ME, Pande PP, Kalyanaraman A. On-chip network-enabled multicore platforms targeting maximum likelihood phylogeny reconstruction Ieee Transactions On Computer-Aided Design of Integrated Circuits and Systems. 31: 1061-1073. DOI: 10.1109/Tcad.2012.2188401  0.349
2012 Majumder T, Sarkar S, Pande PP, Kalyanaraman A. NoC-based hardware accelerator for breakpoint phylogeny Ieee Transactions On Computers. 61: 857-869. DOI: 10.1109/Tc.2011.100  0.405
2011 Kalyanaraman A, Cannon WR, Latt B, Baxter DJ. MapReduce implementation of a hybrid spectral library-database search method for large-scale peptide identification. Bioinformatics (Oxford, England). 27: 3072-3. PMID 21926122 DOI: 10.1093/Bioinformatics/Btr523  0.411
2011 Chapman T, Kalyanaraman A. An OpenMP algorithm and implementation for clustering biological graphs Iaaa'11 - Proceedings of the 1st Workshop On Irregular Applications: Architectures and Algorithm, Co-Located With Sc'11. 3-10. DOI: 10.1145/2089142.2089146  0.4
2010 Velasco R, Zharkikh A, Affourtit J, Dhingra A, Cestaro A, Kalyanaraman A, Fontana P, Bhatnagar SK, Troggio M, Pruss D, Salvi S, Pindo M, Baldi P, Castelletti S, Cavaiuolo M, et al. The genome of the domesticated apple (Malus × domestica Borkh.). Nature Genetics. 42: 833-9. PMID 20802477 DOI: 10.1038/Ng.654  0.473
2010 Sarkar S, Kulkarni GR, Pande PP, Kalyanaraman A. Network-on-chip hardware accelerators for biological sequence alignment Ieee Transactions On Computers. 59: 29-41. DOI: 10.1109/Tc.2009.133  0.383
2010 Wu C, Kalyanaraman A, Cannon WR. A scalable parallel algorithm for large-scale protein sequence homology detection Proceedings of the International Conference On Parallel Processing. 333-342. DOI: 10.1109/ICPP.2010.41  0.514
2008 Wu C, Kalyanaraman A. An efficient parallel approach for identifying protein families in large-scale metagenomic data sets 2008 Sc - International Conference For High Performance Computing, Networking, Storage and Analysis, Sc 2008. DOI: 10.1109/SC.2008.5214891  0.569
2007 Kalyanaraman A, Emrich SJ, Schnable PS, Aluru S. Assembling genomes on large-scale parallel computers Journal of Parallel and Distributed Computing. 67: 1240-1255. DOI: 10.1016/J.Jpdc.2007.05.014  0.338
2006 Kalyanaraman A, Aluru S. Efficient algorithms and software for detection of full-lengh LTR retrotransposons Journal of Bioinformatics and Computational Biology. 4: 197-216. PMID 16819780 DOI: 10.1142/S021972000600203X  0.35
2004 Mitreva M, Elling AA, Dante M, Kloek AP, Kalyanaraman A, Aluru S, Clifton SW, Bird DM, Baum TJ, McCarter JP. A survey of SL1-spliced transcripts from the root-lesion nematode Pratylenchus penetrans. Molecular Genetics and Genomics : Mgg. 272: 138-48. PMID 15338281 DOI: 10.1007/S00438-004-1054-0  0.316
2003 Kalyanaraman A, Aluru S, Kothari S, Brendel V. Efficient clustering of large EST data sets on parallel computers Nucleic Acids Research. 31: 2963-2974. PMID 12771222 DOI: 10.1093/Nar/Gkg379  0.376
2002 Kalyanaraman A, Aluru S, Kothari S. Parallel EST clustering Proceedings - International Parallel and Distributed Processing Symposium, Ipdps 2002. 185. DOI: 10.1109/IPDPS.2002.1016587  0.363
2002 Kalyanaraman A, Aluru S, Kothari S. Space and time efficient parallel algorithms and software for EST clustering Proceedings of the International Conference On Parallel Processing. 2002: 331-339. DOI: 10.1109/ICPP.2002.1040889  0.368
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