Ze Tian, Ph.D. - Related publications

Affiliations: 
2012 Computer Science University of Minnesota, Twin Cities, Minneapolis, MN 
Area:
Computer Science, Bioinformatics Biology, Oncology, Genetics
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50 most relevant papers in past 60 days:
Year Citation  Score
2020 Karim MR, Beyan O, Zappa A, Costa IG, Rebholz-Schuhmann D, Cochez M, Decker S. Deep learning-based clustering approaches for bioinformatics. Briefings in Bioinformatics. PMID 32008043 DOI: 10.1093/bib/bbz170   
2020 Xu Z, Liu Y, Li C. Distributed Semi-Supervised Learning With Missing Data. Ieee Transactions On Cybernetics. PMID 32086227 DOI: 10.1109/TCYB.2020.2967072   
2020 Feng S, Zhao C, Fu P. A deep neural network based hierarchical multi-label classification method. The Review of Scientific Instruments. 91: 024103. PMID 32113459 DOI: 10.1063/1.5141161   
2020 Wang Y, Ma Z, Wong KC, Li X. Evolving Multiobjective Cancer Subtype Diagnosis from Cancer Gene Expression Data. Ieee/Acm Transactions On Computational Biology and Bioinformatics. PMID 32086219 DOI: 10.1109/TCBB.2020.2974953   
2020 Wang C, Yu N, Wu MJ, Gao YL, Liu JX, Wang J. Dual Hyper-graph Regularized Supervised NMF for Selecting Differentially Expressed Genes and Tumor Classification. Ieee/Acm Transactions On Computational Biology and Bioinformatics. PMID 32086220 DOI: 10.1109/TCBB.2020.2975173   
2020 Golmakani MK, Polley EC. Super Learner for Survival Data Prediction. The International Journal of Biostatistics. PMID 32097120 DOI: 10.1515/ijb-2019-0065   
2020 Luo B, Yang Y, Liu D. Policy Iteration Q-Learning for Data-Based Two-Player Zero-Sum Game of Linear Discrete-Time Systems. Ieee Transactions On Cybernetics. PMID 32092032 DOI: 10.1109/TCYB.2020.2970969   
2020 Asadi N, Wang Y, Olson I, Obradovic Z. A heuristic information cluster search approach for precise functional brain mapping. Human Brain Mapping. PMID 32034846 DOI: 10.1002/hbm.24944   
2020 Burgos DAT, Vargas RCG, Pedraza C, Agis D, Pozo F. Damage Identification in Structural Health Monitoring: A Brief Review from its Implementation to the Use of Data-Driven Applications. Sensors (Basel, Switzerland). 20. PMID 32013073 DOI: 10.3390/s20030733   
2020 Zalay OC. Blind method for discovering number of clusters in multidimensional datasets by regression on linkage hierarchies generated from random data. Plos One. 15: e0227788. PMID 31971953 DOI: 10.1371/journal.pone.0227788   
2020 Fang Z, Tan J, Wu S, Li M, Wang C, Liu Y, Zhu H. PlasGUN: Gene prediction in plasmid metagenomic short reads using deep learning. Bioinformatics (Oxford, England). PMID 32091572 DOI: 10.1093/bioinformatics/btaa103   
2020 Li X, Zhang S, Wong KC. Evolving Transcriptomic Profiles from Single-cell RNA-seq Data using Nature-Inspired Multiobjective Optimization. Ieee/Acm Transactions On Computational Biology and Bioinformatics. PMID 32031947 DOI: 10.1109/TCBB.2020.2971993   
2020 Cao X, Ding L, Mersha TB. Joint variable selection and network modeling for detecting eQTLs. Statistical Applications in Genetics and Molecular Biology. PMID 32078577 DOI: 10.1515/sagmb-2019-0032   
2020 Prieto Curiel R, Cabrera Arnau C, Torres Pinedo M, González Ramírez H, Bishop SR. A continuous binning for discrete, sparse and concentrated observations. Methodsx. 7: 100709. PMID 32021812 DOI: 10.1016/j.mex.2019.10.020   
2020 Solis Castilla R, Akbari A, Jafari R, Mortazavi BJ. Using Intelligent Personal Annotations to Improve Human Activity Recognition for Movements in Natural Environments. Ieee Journal of Biomedical and Health Informatics. PMID 31940569 DOI: 10.1109/JBHI.2020.2966151   
2020 Zhong W, Dong L, Poston TB, Darville T, Spracklen CN, Wu D, Mohlke KL, Li Y, Li Q, Zheng X. Inferring Regulatory Networks From Mixed Observational Data Using Directed Acyclic Graphs. Frontiers in Genetics. 11: 8. PMID 32127796 DOI: 10.3389/fgene.2020.00008   
2020 Chai X, Gu H, Li F, Duan H, Hu X, Lin K. Deep learning for irregularly and regularly missing data reconstruction. Scientific Reports. 10: 3302. PMID 32094366 DOI: 10.1038/s41598-020-59801-x   
2020 John CR, Watson D, Russ D, Goldmann K, Ehrenstein M, Pitzalis C, Lewis M, Barnes M. M3C: Monte Carlo reference-based consensus clustering. Scientific Reports. 10: 1816. PMID 32020004 DOI: 10.1038/s41598-020-58766-1   
2020 Xiang G, Keller CA, Giardine B, An L, Li Q, Zhang Y, Hardison RC. S3norm: simultaneous normalization of sequencing depth and signal-to-noise ratio in epigenomic data. Nucleic Acids Research. PMID 32086521 DOI: 10.1093/nar/gkaa105   
2020 Alanko J, Bannai H, Cazaux B, Peterlongo P, Stoye J. Finding all maximal perfect haplotype blocks in linear time. Algorithms For Molecular Biology : Amb. 15: 2. PMID 32055252 DOI: 10.1186/s13015-020-0163-6   
2020 Song M, Kang KY, Timakum T, Zhang X. Examining influential factors for acknowledgements classification using supervised learning. Plos One. 15: e0228928. PMID 32059035 DOI: 10.1371/journal.pone.0228928   
2020 Kurt MN, Yilmaz Y, Wang X. Real-Time Nonparametric Anomaly Detection in High-Dimensional Settings. Ieee Transactions On Pattern Analysis and Machine Intelligence. PMID 32011245 DOI: 10.1109/TPAMI.2020.2970410   
2020 He H, Tan Y. Unsupervised Classification of Multivariate Time Series Using VPCA and Fuzzy Clustering With Spatial Weighted Matrix Distance. Ieee Transactions On Cybernetics. 50: 1096-1105. PMID 30561360 DOI: 10.1109/TCYB.2018.2883388   
2020 Silalahi DD, Midi H, Arasan J, Mustafa MS, Caliman JP. Kernel partial diagnostic robust potential to handle high-dimensional and irregular data space on near infrared spectral data. Heliyon. 6: e03176. PMID 32042959 DOI: 10.1016/j.heliyon.2020.e03176   
2020 Liu X, Li M, Tang C, Xia J, Xiong J, Liu L, Kloft M, Zhu E. Efficient and Effective Regularized Incomplete Multi-view Clustering. Ieee Transactions On Pattern Analysis and Machine Intelligence. PMID 32086196 DOI: 10.1109/TPAMI.2020.2974828   
2020 Li F, Cai X, Gao L, Shen W. A Surrogate-Assisted Multiswarm Optimization Algorithm for High-Dimensional Computationally Expensive Problems. Ieee Transactions On Cybernetics. PMID 32071018 DOI: 10.1109/TCYB.2020.2967553   
2020 Chalise P, Ni Y, Fridley BL. Network-based integrative clustering of multiple types of genomic data using non-negative matrix factorization. Computers in Biology and Medicine. 118: 103625. PMID 31999549 DOI: 10.1016/j.compbiomed.2020.103625   
2020 Cornacchia M, Velipasalar S. Autonomous Selective Parts-Based Tracking. Ieee Transactions On Image Processing : a Publication of the Ieee Signal Processing Society. PMID 31995487 DOI: 10.1109/TIP.2020.2967580   
2020 Jagdhuber R, Lang M, Stenzl A, Neuhaus J, Rahnenführer J. Cost-Constrained feature selection in binary classification: adaptations for greedy forward selection and genetic algorithms. Bmc Bioinformatics. 21: 26. PMID 31992203 DOI: 10.1186/s12859-020-3361-9   
2020 Tehrani AKZ, Rivaz H. Displacement Estimation in Ultrasound Elastography using Pyramidal Convolutional Neural Network. Ieee Transactions On Ultrasonics, Ferroelectrics, and Frequency Control. PMID 32070949 DOI: 10.1109/TUFFC.2020.2973047   
2020 He J, Zhang X, Zhou Y, Maibvisira M. A Subspace Approach to Sparse Sampling based Data Gathering in Wireless Sensor Networks. Sensors (Basel, Switzerland). 20. PMID 32059454 DOI: 10.3390/s20040985   
2020 Li S, Huang J, Liu J, Huang T, Chen H. Relative-path-based algorithm for link prediction on complex networks using a basic similarity factor. Chaos (Woodbury, N.Y.). 30: 013104. PMID 32013467 DOI: 10.1063/1.5094448   
2020 Li C, Xu J, Liu Q, Zhou Y, Mou L, Pu Z, Xia Y, Zheng H, Wang S. Multi-View Mammographic Density Classification by Dilated and Attention-Guided Residual Learning. Ieee/Acm Transactions On Computational Biology and Bioinformatics. PMID 32012021 DOI: 10.1109/TCBB.2020.2970713   
2020 Liu F, Li L, Liu Y, Cao Z, Yang H, Lu S. HKF-SVR Optimized by Krill Herd Algorithm for Coaxial Bearings Performance Degradation Prediction. Sensors (Basel, Switzerland). 20. PMID 31991654 DOI: 10.3390/s20030660   
2020 Wu Y, Fu Z, Fei J. Fault diagnosis for industrial robots based on a combined approach of manifold learning, treelet transform and Naive Bayes. The Review of Scientific Instruments. 91: 015116. PMID 32012631 DOI: 10.1063/1.5118000   
2020 He H, Liu C, Liu H. Model Reconstruction from Small-Angle X-Ray Scattering Data Using Deep Learning Methods. Iscience. 23: 100906. PMID 32092702 DOI: 10.1016/j.isci.2020.100906   
2020 Abdallah L, Yousef M. GrpClassifierEC: a novel classification approach based on the ensemble clustering space. Algorithms For Molecular Biology : Amb. 15: 3. PMID 32082410 DOI: 10.1186/s13015-020-0162-7   
2020 Song S, Jiang W, Hou L, Zhao H. Leveraging effect size distributions to improve polygenic risk scores derived from summary statistics of genome-wide association studies. Plos Computational Biology. 16: e1007565. PMID 32045423 DOI: 10.1371/journal.pcbi.1007565   
2020 Li S, Zuo X, Li Z, Wang H. Applying Deep Learning to Continuous Bridge Deflection Detected by Fiber Optic Gyroscope for Damage Detection. Sensors (Basel, Switzerland). 20. PMID 32046314 DOI: 10.3390/s20030911   
2020 Dong S, Luo G, Tam C, Wang W, Wang K, Cao S, Chen B, Zhang H, Li S. Deep Atlas Network for Efficient 3D Left Ventricle Segmentation on Echocardiography. Medical Image Analysis. 61: 101638. PMID 32007701 DOI: 10.1016/j.media.2020.101638   
2020 Yu B, Kumbier K. Veridical data science. Proceedings of the National Academy of Sciences of the United States of America. PMID 32054788 DOI: 10.1073/pnas.1901326117   
2020 Kuang H, Wang B, An J, Zhang M, Zhang Z. Voxel-FPN: Multi-Scale Voxel Feature Aggregation for 3D Object Detection from LIDAR Point Clouds. Sensors (Basel, Switzerland). 20. PMID 32012863 DOI: 10.3390/s20030704   
2020 Sarkar A, Yang Y, Vihinen M. Variation benchmark datasets: update, criteria, quality and applications. Database : the Journal of Biological Databases and Curation. 2020. PMID 32016318 DOI: 10.1093/database/baz117   
2020 Wang D, Tian F, Yang SX, Zhu Z, Jiang D, Cai B. Improved Deep CNN with Parameter Initialization for Data Analysis of Near-Infrared Spectroscopy Sensors. Sensors (Basel, Switzerland). 20. PMID 32041366 DOI: 10.3390/s20030874   
2020 Hong W, Qian C, Tang K. Efficient Minimum Cost Seed Selection With Theoretical Guarantees for Competitive Influence Maximization. Ieee Transactions On Cybernetics. PMID 32031962 DOI: 10.1109/TCYB.2020.2966593   
2020 Buetti-Dinh A, Herold M, Christel S, El Hajjami M, Delogu F, Ilie O, Bellenberg S, Wilmes P, Poetsch A, Sand W, Vera M, Pivkin IV, Friedman R, Dopson M. Reverse engineering directed gene regulatory networks from transcriptomics and proteomics data of biomining bacterial communities with approximate Bayesian computation and steady-state signalling simulations. Bmc Bioinformatics. 21: 23. PMID 31964336 DOI: 10.1186/s12859-019-3337-9   
2020 Chattopadhyay A, Hassanzadeh P, Pasha S. Predicting clustered weather patterns: A test case for applications of convolutional neural networks to spatio-temporal climate data. Scientific Reports. 10: 1317. PMID 31992743 DOI: 10.1038/s41598-020-57897-9   
2020 Alam MK, Aziz AA, Latif SA, Awang A. Error-Aware Data Clustering for In-Network Data Reduction in Wireless Sensor Networks. Sensors (Basel, Switzerland). 20. PMID 32069936 DOI: 10.3390/s20041011   
2020 Liu T, Xu H, Ragulskis M, Cao M, Ostachowicz W. A Data-Driven Damage Identification Framework Based on Transmissibility Function Datasets and One-Dimensional Convolutional Neural Networks: Verification on a Structural Health Monitoring Benchmark Structure. Sensors (Basel, Switzerland). 20. PMID 32075311 DOI: 10.3390/s20041059   
2020 Williams DR, Rast P, Pericchi LR, Mulder J. Comparing Gaussian graphical models with the posterior predictive distribution and Bayesian model selection. Psychological Methods. PMID 32077709 DOI: 10.1037/met0000254