| Year |
Citation |
Score |
| 2023 |
Winfree S, McNutt AT, Khochare S, Borgard TJ, Barwinska D, Sabo AR, Ferkowicz MJ, Williams JC, Lingeman JE, Gulbronson CJ, Kelly KJ, Sutton TA, Dagher PC, Eadon MT, Dunn KW, et al. Integrated Cytometry With Machine Learning Applied to High-Content Imaging of Human Kidney Tissue for In Situ Cell Classification and Neighborhood Analysis. Laboratory Investigation; a Journal of Technical Methods and Pathology. 103: 100104. PMID 36867975 DOI: 10.1016/j.labinv.2023.100104 |
0.329 |
|
| 2023 |
Ferkowicz MJ, Winfree S, Sabo AR, Kamocka MM, Khochare S, Barwinska D, Eadon MT, Cheng YH, Phillips CL, Sutton TA, Kelly KJ, Dagher PC, El-Achkar TM, Dunn KW, Knight R, ... ... Dunn K, et al. Large-scale, three-dimensional tissue cytometry of the human kidney: a complete and accessible pipeline. Laboratory Investigation; a Journal of Technical Methods and Pathology. 101: 661-676. PMID 36775387 DOI: 10.1038/s41374-020-00518-w |
0.307 |
|
| 2021 |
Ferkowicz MJ, Winfree S, Sabo AR, Kamocka MM, Khochare S, Barwinska D, Eadon MT, Cheng YH, Phillips CL, Sutton TA, Kelly KJ, Dagher PC, El-Achkar TM, Dunn KW. Large-scale, three-dimensional tissue cytometry of the human kidney: a complete and accessible pipeline. Laboratory Investigation; a Journal of Technical Methods and Pathology. PMID 33408350 DOI: 10.1038/s41374-020-00518-w |
0.307 |
|
| 2021 |
Muriello PA, Dunn KW. Improving Signal Levels in Intravital Multiphoton Microscopy using an Objective Correction Collar. Optics Communications. 281: 1806-1812. PMID 19343075 DOI: 10.1016/j.optcom.2007.05.070 |
0.333 |
|
| 2020 |
Ho DJ, Mas Montserrat D, Fu C, Salama P, Dunn KW, Delp EJ. Sphere estimation network: three-dimensional nuclei detection of fluorescence microscopy images. Journal of Medical Imaging (Bellingham, Wash.). 7: 044003. PMID 32904135 DOI: 10.1117/1.Jmi.7.4.044003 |
0.377 |
|
| 2020 |
Barwinska D, Ferkowicz MJ, Cheng YH, Winfree S, Dunn KW, Kelly KJ, Sutton TA, Rovin BH, Parikh SV, Phillips CL, Dagher PC, El-Achkar TM, Eadon MT. Application of Laser Microdissection to Uncover Regional Transcriptomics in Human Kidney Tissue. Journal of Visualized Experiments : Jove. PMID 32597856 DOI: 10.3791/61371 |
0.363 |
|
| 2020 |
Reissaus CA, Day KH, Mirmira RG, Dunn KW, Pavalko FM, Day RN. PIE-FLIM Measurements of Two Different FRET-Based Biosensor Activities in the Same Living Cells. Biophysical Journal. PMID 32191861 DOI: 10.1016/J.Bpj.2020.03.003 |
0.385 |
|
| 2019 |
Dunn KW, Fu C, Ho DJ, Lee S, Han S, Salama P, Delp EJ. DeepSynth: Three-dimensional nuclear segmentation of biological images using neural networks trained with synthetic data. Scientific Reports. 9: 18295. PMID 31797882 DOI: 10.1038/S41598-019-54244-5 |
0.378 |
|
| 2019 |
Clendenon SG, Fu X, Von Hoene RA, Clendenon JL, Sluka JP, Winfree S, Mang H, Martinez M, Filson A, Klaunig JE, Glazier JA, Dunn KW. Spatial Temporal Analysis of Fieldwise Flow in Microvasculature. Journal of Visualized Experiments : Jove. PMID 31789313 DOI: 10.3791/60493 |
0.346 |
|
| 2019 |
Zhang Y, Hato T, Dagher PC, Nichols EL, Smith CJ, Dunn KW, Howard SS. Automatic segmentation of intravital fluorescence microscopy images by K-means clustering of FLIM phasors. Optics Letters. 44: 3928-3931. PMID 31415514 DOI: 10.1364/Ol.44.003928 |
0.387 |
|
| 2019 |
Tavakoli M, Tsekouras K, Day R, Dunn KW, Presse S. Quantitative Kinetic Models from Intravital Microcopy: A Case Study Using Hepatic Transport. The Journal of Physical Chemistry. B. PMID 31298856 DOI: 10.1021/Acs.Jpcb.9B04729 |
0.303 |
|
| 2019 |
Reissaus CA, Piñeros AR, Twigg AN, Orr KS, Conteh AM, Martinez MM, Kamocka MM, Day RN, Tersey SA, Mirmira RG, Dunn KW, Linnemann AK. A Versatile, Portable Intravital Microscopy Platform for Studying Beta-cell Biology In Vivo. Scientific Reports. 9: 8449. PMID 31186447 DOI: 10.1038/S41598-019-44777-0 |
0.385 |
|
| 2019 |
REISSAUS CA, TERSEY SA, DUNN KW, LINNEMANN AK, MIRMIRA R. 194-OR: A Versatile Platform for Intravital Imaging of Biosensor-Labelled Beta Cells In Situ Diabetes. 68: 194-OR. DOI: 10.2337/Db19-194-Or |
0.337 |
|
| 2018 |
Gadgil NJ, Salama P, Dunn KW, Delp EJ. Segmentation of biological images containing multitarget labeling using the jelly filling framework. Journal of Medical Imaging (Bellingham, Wash.). 5: 044006. PMID 30840740 DOI: 10.1117/1.Jmi.5.4.044006 |
0.415 |
|
| 2018 |
Swallow EA, Aref MW, Chen N, Byiringiro I, Hammond MA, McCarthy BP, Territo PR, Kamocka MM, Winfree S, Dunn KW, Moe SM, Allen MR. Skeletal accumulation of fluorescently tagged zoledronate is higher in animals with early stage chronic kidney disease. Osteoporosis International : a Journal Established as Result of Cooperation Between the European Foundation For Osteoporosis and the National Osteoporosis Foundation of the Usa. PMID 29947866 DOI: 10.1007/S00198-018-4589-3 |
0.316 |
|
| 2018 |
Winfree S, Dagher PC, Dunn KW, Eadon MT, Ferkowicz M, Barwinska D, Kelly KJ, Sutton TA, El-Achkar TM. Quantitative Large-Scale Three-Dimensional Imaging of Human Kidney Biopsies: A Bridge to Precision Medicine in Kidney Disease. Nephron. 1-6. PMID 29870980 DOI: 10.1159/000490006 |
0.37 |
|
| 2018 |
Ryan J, Morgan RE, Chen Y, Volak L, Dunn RT, Dunn KW. Intravital multiphoton microscopy with fluorescent bile salts in rats as an in vivo biomarker for hepatobiliary transport inhibition. Drug Metabolism and Disposition: the Biological Fate of Chemicals. PMID 29467212 DOI: 10.1124/Dmd.117.079277 |
0.306 |
|
| 2018 |
Varberg KM, Winfree S, Dunn KW, Haneline LS. Kinetic Analysis of Vasculogenesis Quantifies Dynamics of Vasculogenesis and Angiogenesis In Vitro. Journal of Visualized Experiments : Jove. PMID 29443032 DOI: 10.3791/57044 |
0.341 |
|
| 2018 |
Dunn KW, Sutton TA, Sandoval RM. Live-Animal Imaging of Renal Function by Multiphoton Microscopy. Current Protocols in Cytometry. 83: 12.9.1-12.9.25. PMID 29345326 DOI: 10.1002/cpcy.32 |
0.359 |
|
| 2018 |
Lee S, Fu C, Salama P, Dunn KW, Delp EJ. Tubule Segmentation of Fluorescence Microscopy Images Based on Convolutional Neural Networks With Inhomogeneity Correction Electronic Imaging. 2018: 199-1-199-8. DOI: 10.2352/Issn.2470-1173.2018.15.Coimg-199 |
0.4 |
|
| 2017 |
Dunn KW, Day RN. Imaging cell biology and physiology in vivo using intravital microscopy. Methods (San Diego, Calif.). 128: 1-2. PMID 28911732 DOI: 10.1016/J.Ymeth.2017.08.020 |
0.415 |
|
| 2017 |
Winfree S, Ferkowicz MJ, Dagher PC, Kelly KJ, Eadon MT, Sutton TA, Markel TA, Yoder MC, Dunn KW, El-Achkar TM. Large-scale 3-dimensional quantitative imaging of tissues: state-of-the-art and translational implications. Translational Research : the Journal of Laboratory and Clinical Medicine. PMID 28784428 DOI: 10.1016/J.Trsl.2017.07.006 |
0.346 |
|
| 2017 |
Dunn KW, Ryan JC. Using quantitative intravital multiphoton microscopy to dissect hepatic transport in rats. Methods (San Diego, Calif.). PMID 28434905 DOI: 10.1016/J.Ymeth.2017.04.015 |
0.344 |
|
| 2017 |
Hato T, Winfree S, Day R, Sandoval RM, Molitoris BA, Yoder MC, Wiggins RC, Zheng Y, Dunn KW, Dagher PC. Two-Photon Intravital Fluorescence Lifetime Imaging of the Kidney Reveals Cell-Type Specific Metabolic Signatures. Journal of the American Society of Nephrology : Jasn. PMID 28250053 DOI: 10.1681/Asn.2016101153 |
0.375 |
|
| 2017 |
Winfree S, Khan S, Micanovic R, Eadon MT, Kelly KJ, Sutton TA, Phillips CL, Dunn KW, El-Achkar TM. Quantitative Three-Dimensional Tissue Cytometry to Study Kidney Tissue and Resident Immune Cells. Journal of the American Society of Nephrology : Jasn. PMID 28154201 DOI: 10.1681/Asn.2016091027 |
0.391 |
|
| 2017 |
Varberg KM, Winfree S, Chu C, Tu W, Blue EK, Gohn CR, Dunn KW, Haneline LS. Kinetic analyses of vasculogenesis inform mechanistic studies. American Journal of Physiology. Cell Physiology. ajpcell.00367.2016. PMID 28100488 DOI: 10.1152/Ajpcell.00367.2016 |
0.305 |
|
| 2017 |
Ho DJ, Salama P, Dunn KW, Delp EJ. Boundary segmentation for fluorescence microscopy using steerable filters Proceedings of Spie. 10133. DOI: 10.1117/12.2254627 |
0.398 |
|
| 2016 |
Day RN, Tao W, Dunn KW. A simple approach for measuring FRET in fluorescent biosensors using two-photon microscopy. Nature Protocols. 11: 2066-80. PMID 27685098 DOI: 10.1038/Nprot.2016.121 |
0.386 |
|
| 2016 |
Gadgil NJ, Salama P, Dunn KW, Delp EJ. Jelly filling segmentation of fluorescence microscopy images containing incomplete labeling Proceedings - International Symposium On Biomedical Imaging. 2016: 531-535. DOI: 10.1109/ISBI.2016.7493324 |
0.319 |
|
| 2015 |
Tao W, Rubart M, Ryan J, Xiao X, Qiao C, Hato T, Davidson MW, Dunn KW, Day RN. A Practical Method for Monitoring FRET-based Biosensors in Living Animals Using Two-photon Microscopy. American Journal of Physiology. Cell Physiology. ajpcell.00182.2015. PMID 26333599 DOI: 10.1152/Ajpcell.00182.2015 |
0.401 |
|
| 2015 |
Lee S, Salama P, Dunn KW, Delp EJ. Boundary fitting based segmentation of fluorescence microscopy images Proceedings of Spie - the International Society For Optical Engineering. 9408. DOI: 10.1117/12.2085417 |
0.344 |
|
| 2015 |
Rojas R, Ruiz WG, Wang E, Kinlough CL, Poland PA, Hughey RP, Dunn KW, Apodaca G. Correction: RhoB-dependent modulation of early endocytic traffic in Madin-Darby canine kidney cells (Journal of Biological Chemistry (2004)) Journal of Biological Chemistry. 290: 19542. DOI: 10.1074/Jbc.A115.408387 |
0.307 |
|
| 2014 |
Ryan JC, Dunn KW, Decker BS. Effects of chronic kidney disease on liver transport: quantitative intravital microscopy of fluorescein transport in the rat liver. American Journal of Physiology. Regulatory, Integrative and Comparative Physiology. 307: R1488-92. PMID 25339682 DOI: 10.1152/Ajpregu.00371.2014 |
0.302 |
|
| 2013 |
Clendenon SG, Ward HH, Dunn KW, Bacallao R. High resolution 4-dimension imaging of metanephric embryonic kidney morphogenesis Kidney International. 83: 757-761. PMID 23325081 DOI: 10.1038/Ki.2012.464 |
0.403 |
|
| 2012 |
Dunn KW, Sutton TA, Sandoval RM. Live-animal imaging of renal function by multiphoton Microscopy Current Protocols in Cytometry. PMID 23042524 DOI: 10.1002/0471142956.Cy1209S62 |
0.455 |
|
| 2012 |
Lorenz KS, Salama P, Dunn KW, Delp EJ. Digital correction of motion artefacts in microscopy image sequences collected from living animals using rigid and nonrigid registration. Journal of Microscopy. 245: 148-60. PMID 22092443 DOI: 10.1111/J.1365-2818.2011.03557.X |
0.39 |
|
| 2011 |
Clendenon SG, Young PA, Ferkowicz M, Phillips C, Dunn KW. Deep tissue fluorescent imaging in scattering specimens using confocal microscopy Microscopy and Microanalysis. 17: 614-617. PMID 21729357 DOI: 10.1017/S1431927611000535 |
0.376 |
|
| 2011 |
Presson RG, Brown MB, Fisher AJ, Sandoval RM, Dunn KW, Lorenz KS, Delp EJ, Salama P, Molitoris BA, Petrache I. Two-photon imaging within the murine thorax without respiratory and cardiac motion artifact. The American Journal of Pathology. 179: 75-82. PMID 21703395 DOI: 10.1016/J.Ajpath.2011.03.048 |
0.358 |
|
| 2011 |
Dunn KW, Kamocka MM, McDonald JH. A practical guide to evaluating colocalization in biological microscopy. American Journal of Physiology. Cell Physiology. 300: C723-42. PMID 21209361 DOI: 10.1152/Ajpcell.00462.2010 |
0.401 |
|
| 2011 |
Young PA, Clendenon SG, Byars JM, Decca RS, Dunn KW. The effects of spherical aberration on multiphoton fluorescence excitation microscopy. Journal of Microscopy. 242: 157-65. PMID 21118240 DOI: 10.1111/J.1365-2818.2010.03449.X |
0.349 |
|
| 2011 |
Young PA, Clendenon SG, Byars JM, Dunn KW. The effects of refractive index heterogeneity within kidney tissue on multiphoton fluorescence excitation microscopy. Journal of Microscopy. 242: 148-56. PMID 21118239 DOI: 10.1111/J.1365-2818.2010.03448.X |
0.375 |
|
| 2011 |
Lorenz KS, Salama P, Dunn KW, Delp EJ. Non-rigid registration of multiphoton microscopy images using B-splines Progress in Biomedical Optics and Imaging - Proceedings of Spie. 7962. DOI: 10.1117/12.878304 |
0.362 |
|
| 2010 |
Kamocka MM, Mu J, Liu X, Chen N, Zollman A, Sturonas-Brown B, Dunn K, Xu Z, Chen DZ, Alber MS, Rosen ED. Two-photon intravital imaging of thrombus development. Journal of Biomedical Optics. 15: 016020. PMID 20210466 DOI: 10.1117/1.3322676 |
0.356 |
|
| 2010 |
Ghabril MS, Gill EM, Babbey CM, Burford J, Boone L, Burch C, Chalasani NP, Dunn KW. 703 In-Vivo Measurement of Hepatobiliary Transport During Rifampin-Induced Hepatotoxicity in Rats Gastroenterology. 138: S-795. DOI: 10.1016/S0016-5085(10)63661-X |
0.369 |
|
| 2008 |
Goebl NA, Babbey CM, Datta-Mannan A, Witcher DR, Wroblewski VJ, Dunn KW. Neonatal Fc receptor mediates internalization of Fc in transfected human endothelial cells. Molecular Biology of the Cell. 19: 5490-505. PMID 18843053 DOI: 10.1091/Mbc.E07-02-0101 |
0.31 |
|
| 2008 |
Dunn KW, Sutton TA. Functional studies in living animals using multiphoton microscopy Ilar Journal. 49: 66-77. PMID 18172334 DOI: 10.1093/Ilar.49.1.66 |
0.426 |
|
| 2008 |
Muriello PA, Dunn KW. Improving signal levels in intravital multiphoton microscopy using an objective correction collar Optics Communications. 281: 1806-1812. DOI: 10.1016/J.Optcom.2007.05.070 |
0.43 |
|
| 2007 |
Dunn KW, Sutton TA, Sandoval RM. Live-animal imaging of renal function by multiphoton microscopy. Current Protocols in Cytometry. Unit12.9. PMID 18770850 DOI: 10.1002/0471142956.Cy1209S41 |
0.455 |
|
| 2007 |
Rondanino C, Rojas R, Ruiz WG, Wang E, Hughey RP, Dunn KW, Apodaca G. RhoB-dependent modulation of postendocytic traffic in polarized Madin-Darby canine kidney cells. Traffic (Copenhagen, Denmark). 8: 932-49. PMID 17547697 DOI: 10.1111/J.1600-0854.2007.00575.X |
0.34 |
|
| 2006 |
Babbey CM, Ahktar N, Wang E, Chen CC, Grant BD, Dunn KW. Rab10 regulates membrane transport through early endosomes of polarized Madin-Darby canine kidney cells. Molecular Biology of the Cell. 17: 3156-75. PMID 16641372 DOI: 10.1091/Mbc.E05-08-0799 |
0.321 |
|
| 2006 |
Dunn KW, Young PA. Principles of multiphoton microscopy Nephron - Experimental Nephrology. 103. PMID 16543762 DOI: 10.1159/000090614 |
0.457 |
|
| 2005 |
Wang E, Babbey CM, Dunn KW. Performance comparison between the high-speed Yokogawa spinning disc confocal system and single-point scanning confocal systems Journal of Microscopy. 218: 148-159. PMID 15857376 DOI: 10.1111/J.1365-2818.2005.01473.X |
0.389 |
|
| 2004 |
Tanner GA, Sandoval RM, Dunn KW. Two-photon in vivo microscopy of sulfonefluorescein secretion in normal and cystic rat kidneys American Journal of Physiology - Renal Physiology. 286. PMID 12965895 DOI: 10.1152/Ajprenal.00264.2003 |
0.348 |
|
| 2003 |
Dunn K, Maxfield FR. Ratio imaging instrumentation. Methods in Cell Biology. 72: 389-413. PMID 14719342 DOI: 10.1016/S0091-679X(03)72019-6 |
0.354 |
|
| 2003 |
Bacallao RL, Yu W, Dunn KW, Phillips CL. Novel light microscopy imaging techniques in nephrology. Current Opinion in Nephrology and Hypertension. 12: 455-61. PMID 12815343 DOI: 10.1097/00041552-200307000-00015 |
0.359 |
|
| 2003 |
Dunn KW, Sandoval RM, Molitoris BA. Intravital imaging of the kidney using multiparameter multiphoton microscopy Nephron. Experimental Nephrology. 94. PMID 12806182 DOI: 10.1159/000070813 |
0.415 |
|
| 2003 |
Gopalakrishnan S, Dunn KW, Marrs JA. Testing effects of signal transduction pathways on cadherin junctional complex assembly using quantitative image analysis Methods. 30: 218-227. PMID 12798136 DOI: 10.1016/S1046-2023(03)00028-8 |
0.331 |
|
| 2003 |
Kelly KJ, Sandoval RM, Dunn KW, Molitoris BA, Dagher PC. A novel method to determine specificity and sensitivity of the TUNEL reaction in the quantitation of apoptosis American Journal of Physiology - Cell Physiology. 284. PMID 12676658 DOI: 10.1152/Ajpcell.00353.2002 |
0.328 |
|
| 2002 |
Sandoval RM, Bacallao RL, Dunn KW, Leiser JD, Molitoris BA. Nucleotide depletion increases trafficking of gentamicin to the Golgi complex in LLC-PK1 cells American Journal of Physiology - Renal Physiology. 283. PMID 12388419 DOI: 10.1152/Ajprenal.00095.2002 |
0.321 |
|
| 2002 |
Dunn KW, Sandoval RM, Kelly KJ, Dagher PC, Tanner GA, Atkinson SJ, Bacallao RL, Molitoris BA. Functional studies of the kidney of living animals using multicolor two-photon microscopy. American Journal of Physiology. Cell Physiology. 283: C905-16. PMID 12176747 DOI: 10.1152/Ajpcell.00159.2002 |
0.412 |
|
| 2002 |
Clendenon JL, Phillips CL, Sandoval RM, Fang S, Dunn KW. Voxx: a PC-based, near real-time volume rendering system for biological microscopy. American Journal of Physiology. Cell Physiology. 282: C213-8. PMID 11742814 DOI: 10.1152/Ajpcell.2002.282.1.C213 |
0.396 |
|
| 2001 |
Phillips CL, Arend LJ, Filson AJ, Kojetin DJ, Clendenon JL, Fang S, Dunn KW. Three-dimensional imaging of embryonic mouse kidney by two-photon microscopy. The American Journal of Pathology. 158: 49-55. PMID 11141478 DOI: 10.1016/S0002-9440(10)63943-0 |
0.428 |
|
| 2000 |
Wang E, Brown PS, Aroeti B, Chapin SJ, Mostov KE, Dunn KW. Apical and basolateral endocytic pathways of MDCK cells meet in acidic common endosomes distinct from a nearly-neutral apical recycling endosome. Traffic (Copenhagen, Denmark). 1: 480-93. PMID 11208134 DOI: 10.1034/J.1600-0854.2000.010606.X |
0.301 |
|
| 2000 |
Brown PS, Wang E, Aroeti B, Chapin SJ, Mostov KE, Dunn KW. Definition of distinct compartments in polarized Madin-Darby canine kidney (MDCK) cells for membrane-volume sorting, polarized sorting and apical recycling. Traffic (Copenhagen, Denmark). 1: 124-40. PMID 11208093 DOI: 10.1034/J.1600-0854.2000.010205.X |
0.308 |
|
| 2000 |
Sandoval RM, Dunn KW, Molitoris BA. Gentamicin traffics rapidly and directly to the Golgi complex in LLC-PK1 cells American Journal of Physiology - Renal Physiology. 279. PMID 11053049 DOI: 10.1152/Ajprenal.2000.279.5.F884 |
0.403 |
|
| 2000 |
Dunn KW, Wang E. Optical aberrations and objective choice in multicolor confocal microscopy Biotechniques. 28: 542-550. PMID 10723569 DOI: 10.2144/00283Rr03 |
0.31 |
|
| 1998 |
Dunn K, Maxfield FR. Chapter 11 Ratio Imaging Instrumentation Methods in Cell Biology. 56: 217-236. DOI: 10.1016/S0091-679X(08)60428-8 |
0.395 |
|
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