Baikang Pei, Ph.D. - Publications

Affiliations: 
2010 University of Connecticut, Storrs, CT, United States 
Area:
Bioinformatics Biology, Computer Science, Systematic Biology

14 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Frankish A, Diekhans M, Jungreis I, Lagarde J, Loveland JE, Mudge JM, Sisu C, Wright JC, Armstrong J, Barnes I, Berry A, Bignell A, Boix C, Carbonell Sala S, Cunningham F, ... ... Pei B, et al. GENCODE 2021. Nucleic Acids Research. PMID 33270111 DOI: 10.1093/nar/gkaa1087  0.343
2018 Frankish A, Diekhans M, Ferreira AM, Johnson R, Jungreis I, Loveland J, Mudge JM, Sisu C, Wright J, Armstrong J, Barnes I, Berry A, Bignell A, Carbonell Sala S, Chrast J, ... ... Pei B, et al. GENCODE reference annotation for the human and mouse genomes. Nucleic Acids Research. PMID 30357393 DOI: 10.1093/Nar/Gky955  0.498
2015 Pervouchine DD, Djebali S, Breschi A, Davis CA, Barja PP, Dobin A, Tanzer A, Lagarde J, Zaleski C, See LH, Fastuca M, Drenkow J, Wang H, Bussotti G, Pei B, et al. Enhanced transcriptome maps from multiple mouse tissues reveal evolutionary constraint in gene expression. Nature Communications. 6: 5903. PMID 25582907 DOI: 10.1038/Ncomms6903  0.477
2014 Gerstein MB, Rozowsky J, Yan KK, Wang D, Cheng C, Brown JB, Davis CA, Hillier L, Sisu C, Li JJ, Pei B, Harmanci AO, Duff MO, Djebali S, Alexander RP, et al. Comparative analysis of the transcriptome across distant species. Nature. 512: 445-8. PMID 25164755 DOI: 10.1038/Nature13424  0.403
2014 Sisu C, Pei B, Leng J, Frankish A, Zhang Y, Balasubramanian S, Harte R, Wang D, Rutenberg-Schoenberg M, Clark W, Diekhans M, Rozowsky J, Hubbard T, Harrow J, Gerstein MB. Comparative analysis of pseudogenes across three phyla. Proceedings of the National Academy of Sciences of the United States of America. 111: 13361-6. PMID 25157146 DOI: 10.1073/Pnas.1407293111  0.402
2013 Abyzov A, Iskow R, Gokcumen O, Radke DW, Balasubramanian S, Pei B, Habegger L, Lee C, Gerstein M. Analysis of variable retroduplications in human populations suggests coupling of retrotransposition to cell division. Genome Research. 23: 2042-52. PMID 24026178 DOI: 10.1101/Gr.154625.113  0.398
2012 Zhao Y, Chen MH, Pei B, Rowe D, Shin DG, Xie W, Yu F, Kuo L. A Bayesian Approach to Pathway Analysis by Integrating Gene-Gene Functional Directions and Microarray Data. Statistics in Biosciences. 4: 105-131. PMID 23482678 DOI: 10.1007/S12561-011-9046-1  0.67
2012 Pei B, Shin DG. Reconstruction of biological networks by incorporating prior knowledge into Bayesian network models. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 19: 1324-34. PMID 23210479 DOI: 10.1089/Cmb.2011.0194  0.579
2012 Harrow J, Frankish A, Gonzalez JM, Tapanari E, Diekhans M, Kokocinski F, Aken BL, Barrell D, Zadissa A, Searle S, Barnes I, Bignell A, Boychenko V, Hunt T, Kay M, ... ... Pei B, et al. GENCODE: the reference human genome annotation for The ENCODE Project. Genome Research. 22: 1760-74. PMID 22955987 DOI: 10.1101/Gr.135350.111  0.401
2012 Pei B, Sisu C, Frankish A, Howald C, Habegger L, Mu XJ, Harte R, Balasubramanian S, Tanzer A, Diekhans M, Reymond A, Hubbard TJ, Harrow J, Gerstein MB. The GENCODE pseudogene resource. Genome Biology. 13: R51. PMID 22951037 DOI: 10.1186/Gb-2012-13-9-R51  0.421
2010 Pei B, Rowe DW, Shin DG. Learning Bayesian networks with integration of indirect prior knowledge. International Journal of Data Mining and Bioinformatics. 4: 505-19. PMID 21133038 DOI: 10.1504/IJDMB.2010.035897  0.56
2009 Shin DG, Kazmi SA, Pei B, Kim YA, Maddox J, Nori R, Wong A, Krueger W, Rowe D. Computing consistency between microarray data and known gene regulation relationships. Ieee Transactions On Information Technology in Biomedicine : a Publication of the Ieee Engineering in Medicine and Biology Society. 13: 1075-82. PMID 19783507 DOI: 10.1109/TITB.2009.2032540  0.66
2008 Pei B, Rowe DW, Shin DG. Reverse engineering of gene regulatory network by integration of prior global gene regulatory information Proceedings - Ieee International Conference On Bioinformatics and Biomedicine, Bibm 2008. 129-134. DOI: 10.1109/BIBM.2008.55  0.604
2008 Kazmi SA, Kim YA, Pei B, Ravi N, Rowe DW, Wang HW, Wong A, Shin DG. Meta analysis of microarray data using gene regulation pathways Proceedings - Ieee International Conference On Bioinformatics and Biomedicine, Bibm 2008. 37-42. DOI: 10.1109/BIBM.2008.32  0.635
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