| Year |
Citation |
Score |
| 2020 |
Gao T, Guo Y, Zhang B, Cicotti P, Lu Y, Balaji P, Taufer M. Memory-Efficient and Skew-Tolerant MapReduce Over MPI for Supercomputing Systems Ieee Transactions On Parallel and Distributed Systems. 31: 2734-2748. DOI: 10.1109/Tpds.2019.2932066 |
0.52 |
|
| 2020 |
Ahn DH, Bass N, Chu A, Garlick J, Grondona M, Herbein S, Ingólfsson HI, Koning J, Patki T, Scogland TRW, Springmeyer B, Taufer M. Flux: Overcoming scheduling challenges for exascale workflows Future Generation Computer Systems. 110: 202-213. DOI: 10.1016/J.Future.2020.04.006 |
0.679 |
|
| 2017 |
Johnston T, Zhang B, Liwo A, Crivelli S, Taufer M. In situ data analytics and indexing of protein trajectories. Journal of Computational Chemistry. PMID 28093787 DOI: 10.1002/Jcc.24729 |
0.568 |
|
| 2017 |
Searles R, Herbein S, Johnston T, Taufer M, Chandrasekaran S. Creating a portable, high-level graph analytics paradigm for compute and data-intensive applications International Journal of High Performance Computing and Networking. 13: 105-118. DOI: 10.1504/Ijhpcn.2017.10007922 |
0.666 |
|
| 2017 |
Deelman E, Peterka T, Altintas I, Carothers CD, van Dam KK, Moreland K, Parashar M, Ramakrishnan L, Taufer M, Vetter J. The future of scientific workflows The International Journal of High Performance Computing Applications. 32: 159-175. DOI: 10.1177/1094342017704893 |
0.347 |
|
| 2017 |
Zhang B, Estrada T, Cicotti P, Balaji P, Taufer M. Enabling scalable and accurate clustering of distributed ligand geometries on supercomputers Parallel Computing. 63: 38-60. DOI: 10.1016/j.parco.2017.02.005 |
0.495 |
|
| 2016 |
Stodden V, McNutt M, Bailey DH, Deelman E, Gil Y, Hanson B, Heroux MA, Ioannidis JP, Taufer M. Enhancing reproducibility for computational methods. Science (New York, N.Y.). 354: 1240-1241. PMID 27940837 DOI: 10.1126/Science.Aah6168 |
0.351 |
|
| 2016 |
Herbein S, Dusia A, Landwehr A, McDaniel S, Monsalve J, Yang Y, Seelam SR, Taufer M. Resource management for running HPC applications in container clouds Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 9697: 261-278. DOI: 10.1007/978-3-319-41321-1_14 |
0.307 |
|
| 2015 |
Javadi B, Zhang B, Taufer M. Bandwidth Modeling in Large Distributed Systems for Big Data Applications Parallel and Distributed Computing, Applications and Technologies, Pdcat Proceedings. 2015: 21-27. DOI: 10.1109/PDCAT.2014.12 |
0.549 |
|
| 2015 |
Zhang B, Estrada T, Cicotti P, Balaji P, Taufer M. Accurate scoring of drug conformations at the extreme scale Proceedings - 2015 Ieee/Acm 15th International Symposium On Cluster, Cloud, and Grid Computing, Ccgrid 2015. 817-822. DOI: 10.1109/CCGrid.2015.94 |
0.517 |
|
| 2014 |
Schlachter S, Herbein S, Ou S, Logan JS, Patel S, Taufer M. Pursuing coordinated trajectory progression and efficient resource utilization of GPU-enabled molecular dynamics simulations Ieee Design and Test. 31: 40-50. DOI: 10.1109/Mdat.2013.2284203 |
0.672 |
|
| 2014 |
Zhang B, Estrada T, Cicotti P, Taufer M. Enabling in-situ data analysis for large protein-folding trajectory datasets Proceedings of the International Parallel and Distributed Processing Symposium, Ipdps. 221-230. DOI: 10.1109/IPDPS.2014.33 |
0.528 |
|
| 2013 |
Yehdego DT, Zhang B, Kodimala VK, Johnson KL, Taufer M, Leung MY. Secondary Structure Predictions for Long RNA Sequences Based on Inversion Excursions and MapReduce. Ieee International Symposium On Parallel & Distributed Processing, Workshops and Phd Forum : [Proceedings]. Ieee International Symposium On Parallel & Distributed Processing, Workshops and Phd Forum. 2013: 520-529. PMID 26023357 DOI: 10.1109/IPDPSW.2013.109 |
0.48 |
|
| 2013 |
Zhang B, Yehdego DT, Johnson KL, Leung MY, Taufer M. Enhancement of accuracy and efficiency for RNA secondary structure prediction by sequence segmentation and MapReduce. Bmc Structural Biology. 13: S3. PMID 24564983 DOI: 10.1186/1472-6807-13-S1-S3 |
0.521 |
|
| 2013 |
DiMarco J, Taufer M. Performance impact of dynamic parallelism on different clustering algorithms Proceedings of Spie - the International Society For Optical Engineering. 8752. DOI: 10.1117/12.2018069 |
0.393 |
|
| 2013 |
Taufer M, Ganesan N, Patel S. GPU-enabled macromolecular simulation: Challenges and opportunities Computing in Science and Engineering. 15: 56-65. DOI: 10.1109/Mcse.2012.42 |
0.367 |
|
| 2013 |
Schlachter S, Herbein S, Taufer M, Ou S, Patel S, Logan JS. Efficient SDS simulations on multi-GPU nodes of XSEDE high-end clusters Proceedings - Ieee 9th International Conference On E-Science, E-Science 2013. 116-123. DOI: 10.1109/eScience.2013.22 |
0.305 |
|
| 2013 |
Zhang B, Estrada T, Cicotti P, Taufer M. On efficiently capturing scientific properties in distributed big data without moving the data: A case study in distributed structural biology using MapReduce Proceedings - 16th Ieee International Conference On Computational Science and Engineering, Cse 2013. 117-124. DOI: 10.1109/CSE.2013.28 |
0.533 |
|
| 2012 |
Estrada T, Zhang B, Cicotti P, Armen RS, Taufer M. A scalable and accurate method for classifying protein-ligand binding geometries using a MapReduce approach Computers in Biology and Medicine. 42: 758-771. PMID 22658682 DOI: 10.1016/J.Compbiomed.2012.05.001 |
0.533 |
|
| 2012 |
Yehdego DT, Zhang B, Taufer M, Kodimala VKR, Vegesna R, Viswakula S, Johnson KL, Leung MY. Secondary structure predictions for long RNA sequences based on inversion excursions - Preliminary results 2012 Acm Conference On Bioinformatics, Computational Biology and Biomedicine, Bcb 2012. 545-547. DOI: 10.1145/2382936.2383016 |
0.445 |
|
| 2012 |
Wezowicz M, Saunder BD, Taufer M. Dealing with performance/portability and performance/accuracy trade-offs in heterogeneous computing systems: A case study with matrix multiplication modulo primes Proceedings of Spie - the International Society For Optical Engineering. 8403. DOI: 10.1117/12.919323 |
0.303 |
|
| 2012 |
Estrada T, Zhang B, Taufer M, Cicotti P, Armen R. Reengineering high-throughput molecular datasets for scalable clustering using MapReduce Proceedings of the 14th Ieee International Conference On High Performance Computing and Communications, Hpcc-2012 - 9th Ieee International Conference On Embedded Software and Systems, Icess-2012. 351-359. DOI: 10.1109/HPCC.2012.54 |
0.495 |
|
| 2012 |
Zhang B, Yehdego DT, Johnson KL, Leung MY, Taufer M. A modularized MapReduce framework to support RNA secondary structure prediction and analysis workflows Proceedings - 2012 Ieee International Conference On Bioinformatics and Biomedicine Workshops, Bibmw 2012. 86-93. DOI: 10.1109/BIBMW.2012.6470251 |
0.472 |
|
| 2012 |
Arampatzis G, Katsoulakis MA, Plecháč P, Taufer M, Xu L. Hierarchical fractional-step approximations and parallel kinetic Monte Carlo algorithms Journal of Computational Physics. 231: 7795-7814. DOI: 10.1016/J.Jcp.2012.07.017 |
0.372 |
|
| 2011 |
Ganesan N, Bauer BA, Lucas TR, Patel S, Taufer M. Structural, dynamic, and electrostatic properties of fully hydrated DMPC bilayers from molecular dynamics simulations accelerated with graphical processing units (GPUs). Journal of Computational Chemistry. 32: 2958-73. PMID 21793003 DOI: 10.1002/Jcc.21871 |
0.333 |
|
| 2011 |
Rahaman O, Estrada TP, Doren DJ, Taufer M, Brooks CL, Armen RS. Evaluation of several two-step scoring functions based on linear interaction energy, effective ligand size, and empirical pair potentials for prediction of protein-ligand binding geometry and free energy. Journal of Chemical Information and Modeling. 51: 2047-65. PMID 21644546 DOI: 10.1021/Ci1003009 |
0.303 |
|
| 2011 |
Bauer BA, Davis JE, Taufer M, Patel S. Molecular dynamics simulations of aqueous ions at the liquid-vapor interface accelerated using graphics processors. Journal of Computational Chemistry. 32: 375-85. PMID 20862755 DOI: 10.1002/Jcc.21578 |
0.401 |
|
| 2011 |
Ganesan N, Chamberlain RD, Buhler J, Taufer M. Rolling partial prefix-sums to speedup evaluation of uniform and affine recurrence equations Proceedings of Spie - the International Society For Optical Engineering. 8060. DOI: 10.1117/12.884896 |
0.365 |
|
| 2009 |
Estrada T, Taufer M, Anderson DP. Performance prediction and analysis of BOINC projects: An empirical study with EmBOINC Journal of Grid Computing. 7: 537-554. DOI: 10.1007/S10723-009-9126-3 |
0.382 |
|
| 2006 |
Taufer M, An C, Kerstens A, Brooks CL. PredictorΗome: A "protein structure prediction supercomputer" based on global computing Ieee Transactions On Parallel and Distributed Systems. 17: 786-796. DOI: 10.1109/Tpds.2006.110 |
0.353 |
|
| 2005 |
Cicotti P, Taufer M, Chien AA. DGMonitor: A performance monitoring tool for sandbox-based desktop grid platforms Journal of Supercomputing. 34: 113-133. DOI: 10.1007/S11227-005-2336-Y |
0.429 |
|
| 2005 |
Taufer M, Crowley M, Price DJ, Chien AA, Brooks CL. Study of a highly accurate and fast protein-ligand docking method based on molecular dynamics Concurrency Computation Practice and Experience. 17: 1627-1641. DOI: 10.1002/Cpe.949 |
0.381 |
|
| 2003 |
Taufer M, Stricker T. A performance monitor based on virtual global time for clusters of PCs Proceedings - Ieee International Conference On Cluster Computing, Iccc. 2003: 64-72. DOI: 10.1109/CLUSTR.2003.1253300 |
0.333 |
|
| 2003 |
Uk B, Taufer M, Stricker T, Settanni G, Cavalli A, Caflisch A. Combining task- and data parallelism to speed up protein folding on a desktop grid platform Proceedings - Ccgrid 2003: 3rd Ieee/Acm International Symposium On Cluster Computing and the Grid. 240-249. DOI: 10.1109/CCGRID.2003.1199374 |
0.33 |
|
| 2002 |
Taufer M, Perathoner E, Cavalli A, Caflisch A, Stricker T. Performance characterization of a molecular dynamics code on PC clusters: Is there any easy parallelism in CHARMM? Proceedings - International Parallel and Distributed Processing Symposium, Ipdps 2002. 282-289. DOI: 10.1109/IPDPS.2002.1015505 |
0.322 |
|
| 2002 |
Taufer M, Stricker T, Weber R. Scalability and resource usage of an OLAP benchmark on clusters of PCs Annual Acm Symposium On Parallel Algorithms and Architectures. 83-94. |
0.36 |
|
| Show low-probability matches. |
