Amy Brock, Ph.D. - Publications

Affiliations: 
2013- BME University of Texas at Austin, Austin, Texas, U.S.A. 
Area:
Cell Biology, Molecular Biology, General Biophysics
Website:
www.brocklab.com

47 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2024 Miniere HJM, Lima EABF, Lorenzo G, Hormuth DA, Ty S, Brock A, Yankeelov TE. A mathematical model for predicting the spatiotemporal response of breast cancer cells treated with doxorubicin. Cancer Biology & Therapy. 25: 2321769. PMID 38411436 DOI: 10.1080/15384047.2024.2321769  0.412
2023 Howland KK, Brock A. Cellular barcoding tracks heterogeneous clones through selective pressures and phenotypic transitions. Trends in Cancer. PMID 37105856 DOI: 10.1016/j.trecan.2023.03.008  0.398
2022 Cotner M, Meng S, Jost T, Gardner A, De Santiago C, Brock A. Integration of Quantitative Methods and Mathematical Approaches for the Modeling of Cancer Cell Proliferation Dynamics. American Journal of Physiology. Cell Physiology. PMID 36503241 DOI: 10.1152/ajpcell.00185.2022  0.389
2022 Yang EY, Howard GR, Brock A, Yankeelov TE, Lorenzo G. Mathematical characterization of population dynamics in breast cancer cells treated with doxorubicin. Frontiers in Molecular Biosciences. 9: 972146. PMID 36172049 DOI: 10.3389/fmolb.2022.972146  0.771
2022 Howard GR, Jost TA, Yankeelov TE, Brock A. Quantification of long-term doxorubicin response dynamics in breast cancer cell lines to direct treatment schedules. Plos Computational Biology. 18: e1009104. PMID 35358172 DOI: 10.1371/journal.pcbi.1009104  0.758
2022 Gardner A, Morgan D, Al'Khafaji A, Brock A. Functionalized Lineage Tracing for the Study and Manipulation of Heterogeneous Cell Populations. Methods in Molecular Biology (Clifton, N.J.). 2394: 109-131. PMID 35094325 DOI: 10.1007/978-1-0716-1811-0_8  0.778
2021 Gutierrez C, Al'Khafaji AM, Brenner E, Johnson KE, Gohil SH, Lin Z, Knisbacher BA, Durrett RE, Li S, Parvin S, Biran A, Zhang W, Rassenti L, Kipps TJ, Livak KJ, ... ... Brock A, et al. Multifunctional barcoding with ClonMapper enables high-resolution study of clonal dynamics during tumor evolution and treatment. Nature Cancer. 2: 758-772. PMID 34939038 DOI: 10.1038/s43018-021-00222-8  0.763
2021 Morgan D, Jost TA, De Santiago C, Brock A. Applications of high-resolution clone tracking technologies in cancer. Current Opinion in Biomedical Engineering. 19. PMID 34901584 DOI: 10.1016/j.cobme.2021.100317  0.343
2021 Yang J, Virostko J, Hormuth DA, Liu J, Brock A, Kowalski J, Yankeelov TE. An experimental-mathematical approach to predict tumor cell growth as a function of glucose availability in breast cancer cell lines. Plos One. 16: e0240765. PMID 34255770 DOI: 10.1371/journal.pone.0240765  0.31
2020 Kazerouni AS, Gadde M, Gardner A, Hormuth DA, Jarrett AM, Johnson KE, Lima EABF, Lorenzo G, Phillips C, Brock A, Yankeelov TE. Integrating Quantitative Assays with Biologically Based Mathematical Modeling for Predictive Oncology. Iscience. 23: 101807. PMID 33299976 DOI: 10.1016/j.isci.2020.101807  0.751
2020 Johnson KE, Howard GR, Morgan D, Brenner EA, Gardner AL, Durrett RE, Mo W, Al'Khafaji A, Sontag ED, Jarrett AM, Yankeelov TE, Brock A. Integrating transcriptomics and bulk time course data into a mathematical framework to describe and predict therapeutic resistance in cancer. Physical Biology. 18: 016001. PMID 33215611 DOI: 10.1088/1478-3975/Abb09C  0.737
2020 Phillips CM, Lima EABF, Woodall RT, Brock A, Yankeelov TE. A hybrid model of tumor growth and angiogenesis: In silico experiments. Plos One. 15: e0231137. PMID 32275674 DOI: 10.1371/Journal.Pone.0231137  0.388
2020 Brenner E, Tiwari GR, Kapoor M, Liu Y, Brock A, Mayfield RD. Single cell transcriptome profiling of the human alcohol-dependent brain. Human Molecular Genetics. PMID 32142123 DOI: 10.1093/Hmg/Ddaa038  0.682
2019 Lele TP, Brock A, Peyton SR. Emerging Concepts and Tools in Cell Mechanomemory. Annals of Biomedical Engineering. PMID 31745676 DOI: 10.1007/S10439-019-02412-Z  0.362
2019 Johnson KE, Howard G, Mo W, Strasser MK, Lima EABF, Huang S, Brock A. Cancer cell population growth kinetics at low densities deviate from the exponential growth model and suggest an Allee effect. Plos Biology. 17: e3000399. PMID 31381560 DOI: 10.1371/Journal.Pbio.3000399  0.772
2019 Ma KY, Schonnesen AA, Brock A, Van Den Berg C, Eckhardt SG, Liu Z, Jiang N. Single-cell RNA sequencing of lung adenocarcinoma reveals heterogeneity of immune response-related genes. Jci Insight. 4. PMID 30821712 DOI: 10.1172/Jci.Insight.121387  0.447
2019 Gutierrez C, Al'Khafaji A, Brenner E, Durrett R, Johnson K, Zhang W, Li S, Livak KJ, Neuberg DS, Brock A, Wu CJ. Lineage Tracing in Chronic Lymphocytic Leukemia Reveals Clones with Stable Gene Expression States That Differentially Respond to Therapy Blood. 134: 1229-1229. DOI: 10.1182/Blood-2019-129303  0.771
2018 Jarrett AM, Lima EABF, Hormuth DA, McKenna IMT, Feng X, Ekrut DA, Resende ACM, Brock A, Yankeelov TE. Mathematical models of tumor cell proliferation: a review of the literature. Expert Review of Anticancer Therapy. PMID 30252552 DOI: 10.1080/14737140.2018.1527689  0.47
2018 Joyce MH, Lu C, James ER, Hegab R, Allen SC, Suggs LJ, Brock A. Phenotypic Basis for Matrix Stiffness-Dependent Chemoresistance of Breast Cancer Cells to Doxorubicin. Frontiers in Oncology. 8: 337. PMID 30234012 DOI: 10.3389/Fonc.2018.00337  0.455
2018 Al'Khafaji AM, Deatherage D, Brock A. Control of Lineage-Specific Gene Expression by Functionalized gRNA Barcodes. Acs Synthetic Biology. PMID 30169961 DOI: 10.1021/Acssynbio.8B00105  0.781
2018 Howard GR, Johnson KE, Rodriguez Ayala A, Yankeelov TE, Brock A. A multi-state model of chemoresistance to characterize phenotypic dynamics in breast cancer. Scientific Reports. 8: 12058. PMID 30104569 DOI: 10.1038/S41598-018-30467-W  0.777
2018 McKenna MT, Weis JA, Brock A, Quaranta V, Yankeelov TE. Precision Medicine with Imprecise Therapy: Computational Modeling for Chemotherapy in Breast Cancer. Translational Oncology. 11: 732-742. PMID 29674173 DOI: 10.1016/J.Tranon.2018.03.009  0.416
2017 Brock A, Huang S. Precision Oncology: Between Vaguely Right and Precisely Wrong. Cancer Research. PMID 29162615 DOI: 10.1158/0008-5472.Can-17-0448  0.613
2017 Clark A, Bird NK, Brock A. Intraductal Delivery to the Rabbit Mammary Gland. Journal of Visualized Experiments : Jove. PMID 28362409 DOI: 10.3791/55209  0.371
2017 Johnson KE, Howard G, Brock A, Yankeelov T. Abstract LB-011: Experimentally derived multi-state model of chemoresistance to characterize phenotypic dynamics in breast cancer Cancer Research. 77. DOI: 10.1158/1538-7445.Am2017-Lb-011  0.757
2017 Joyce MH, Allen S, Suggs L, Brock A. Novel Nanomaterials Enable Biomimetic Models of the Tumor Microenvironment Journal of Nanotechnology. 2017: 1-8. DOI: 10.1155/2017/5204163  0.75
2015 Brock A, Krause S, Ingber DE. Control of cancer formation by intrinsic genetic noise and microenvironmental cues. Nature Reviews. Cancer. 15: 499-509. PMID 26156637 DOI: 10.1038/Nrc3959  0.544
2015 Davis JD, Ross C, Li H, Brock A. Abstract P2-03-16: Examining 3-dimensional genome architecture and transcriptional profiles using an optimized HiC-seq protocol in breast cancer cells Cancer Research. 75. DOI: 10.1158/1538-7445.Sabcs14-P2-03-16  0.403
2014 Kanapathipillai M, Brock A, Ingber DE. Nanoparticle targeting of anti-cancer drugs that alter intracellular signaling or influence the tumor microenvironment. Advanced Drug Delivery Reviews. 79: 107-18. PMID 24819216 DOI: 10.1016/J.Addr.2014.05.005  0.525
2014 Brock A, Krause S, Li H, Kowalski M, Goldberg MS, Collins JJ, Ingber DE. Silencing HoxA1 by intraductal injection of siRNA lipidoid nanoparticles prevents mammary tumor progression in mice. Science Translational Medicine. 6: 217ra2. PMID 24382894 DOI: 10.1126/Scitranslmed.3007048  0.573
2013 Krause S, Brock A, Ingber DE. Intraductal injection for localized drug delivery to the mouse mammary gland. Journal of Visualized Experiments : Jove. PMID 24121742 DOI: 10.3791/50692  0.456
2013 Pisco AO, Brock A, Zhou J, Moor A, Mojtahedi M, Jackson D, Huang S. Non-Darwinian dynamics in therapy-induced cancer drug resistance. Nature Communications. 4: 2467. PMID 24045430 DOI: 10.1038/Ncomms3467  0.607
2013 Krause S, Brock A, Goldberg M, Ingber DE. Abstract 2025: Prevention of mammary tumor progression via intraductal injection of nanoparticle-formulated siRNA. Cancer Research. 73: 2025-2025. DOI: 10.1158/1538-7445.Am2013-2025  0.537
2012 Brock A, Goh HT, Yang B, Lu Y, Li H, Loh YH. Cellular reprogramming: a new technology frontier in pharmaceutical research. Pharmaceutical Research. 29: 35-52. PMID 22068279 DOI: 10.1007/S11095-011-0618-Z  0.338
2012 Brock A. Abstract SY08-02: Gene regulatory network models identify targets for mammary tumor normalization Cancer Research. 72. DOI: 10.1158/1538-7445.Am2012-Sy08-02  0.484
2012 Brock A, Li H, Krause S, Kowalski M, Collins JJ, Ingber DE. Abstract 4920: Gene network models identify targets for mammary tumor normalization Cancer Research. 72: 4920-4920. DOI: 10.1158/1538-7445.Am2012-4920  0.618
2012 Brock A, Krause S, Li H, Kowalski M, Collins J, Ingber D. Abstract P5-05-04: Intraductal delivery of RNAi-based therapeutics to gene targets identified through computational systems modeling Cancer Research. 72. DOI: 10.1158/0008-5472.Sabcs12-P5-05-04  0.477
2011 Krause S, Tobin H, Brock A, Ingber DE. Abstract 520: Local changes in tissue microenvironment regulate mammary tumor progression Cancer Research. 71: 520-520. DOI: 10.1158/1538-7445.Am2011-520  0.586
2011 Brock A, Li H, Krause S, Collins JJ, Ingber DE. Abstract 4924: Gene network inference models reveal novel key mediators of mammary tumorigenesis Cancer Research. 71: 4924-4924. DOI: 10.1158/1538-7445.Am2011-4924  0.556
2009 Brock A, Chang H, Huang S. Non-genetic heterogeneity--a mutation-independent driving force for the somatic evolution of tumours. Nature Reviews. Genetics. 10: 336-42. PMID 19337290 DOI: 10.1038/Nrg2556  0.68
2005 Joy MP, Brock A, Ingber DE, Huang S. High-betweenness proteins in the yeast protein interaction network. Journal of Biomedicine & Biotechnology. 2005: 96-103. PMID 16046814 DOI: 10.1155/Jbb.2005.96  0.559
2003 Brock A, Chang E, Ho CC, LeDuc P, Jiang X, Whitesides GM, Ingber DE. Geometric determinants of directional cell motility revealed using microcontact printing. Langmuir : the Acs Journal of Surfaces and Colloids. 19: 1611-7. PMID 14674434 DOI: 10.1021/La026394K  0.655
2003 Brock A, Huang S, Ingber DE. Identification of a distinct class of cytoskeleton-associated mRNAs using microarray technology. Bmc Cell Biology. 4: 6. PMID 12848903 DOI: 10.1186/1471-2121-4-6  0.625
2002 Parker KK, Brock AL, Brangwynne C, Mannix RJ, Wang N, Ostuni E, Geisse NA, Adams JC, Whitesides GM, Ingber DE. Directional control of lamellipodia extension by constraining cell shape and orienting cell tractional forces. Faseb Journal : Official Publication of the Federation of American Societies For Experimental Biology. 16: 1195-204. PMID 12153987 DOI: 10.1096/Fj.02-0038Com  0.627
2002 Brock A, Huang S. A novel trap for dynamic protein interactions in cytokine signaling. Trends in Biotechnology. 20: 145. PMID 11906744 DOI: 10.1016/S0167-7799(02)01959-5  0.462
2002 Brock A, Huang S. A bright new tool lights up promoters Trends in Biotechnology. 20: 490. DOI: 10.1016/S0167-7799(02)02099-1  0.479
2001 Brock A, Huang S. Proteomics in context Trends in Biotechnology. 19: 435. DOI: 10.1016/S0167-7799(01)01863-7  0.504
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