Jhih-Wei Chu - Publications

Affiliations: 
Chemical Engineering University of California, Berkeley, Berkeley, CA 
Area:
Chemical Engineering, Computer Science

35 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2015 Chung PW, Charmot A, Click T, Lin Y, Bae Y, Chu JW, Katz A. Importance of Internal Porosity for Glucan Adsorption in Mesoporous Carbon Materials. Langmuir : the Acs Journal of Surfaces and Colloids. 31: 7288-95. PMID 26033211 DOI: 10.1021/acs.langmuir.5b01115  0.44
2014 Haas KR, Yang H, Chu JW. Trajectory Entropy of Continuous Stochastic Processes at Equilibrium. The Journal of Physical Chemistry Letters. 5: 999-1003. PMID 26270979 DOI: 10.1021/jz500111p  0.68
2014 Persson RA, Voulgarakis NK, Chu JW. Dynamic mesoscale model of dipolar fluids via fluctuating hydrodynamics. The Journal of Chemical Physics. 141: 174105. PMID 25381500 DOI: 10.1063/1.4900498  0.68
2014 Haas KR, Yang H, Chu JW. Analysis of trajectory entropy for continuous stochastic processes at equilibrium. The Journal of Physical Chemistry. B. 118: 8099-107. PMID 24780123 DOI: 10.1021/jp501133w  0.68
2014 Tan YW, Hanson JA, Chu JW, Yang H. Confocal single-molecule FRET for protein conformational dynamics. Methods in Molecular Biology (Clifton, N.J.). 1084: 51-62. PMID 24061915 DOI: 10.1007/978-1-62703-658-0_3  0.68
2013 Haas KR, Yang H, Chu JW. Fisher information metric for the Langevin equation and least informative models of continuous stochastic dynamics. The Journal of Chemical Physics. 139: 121931. PMID 24089743 DOI: 10.1063/1.4820491  0.68
2013 Voulgarakis NK, Shang BZ, Chu JW. Linking hydrophobicity and hydrodynamics by the hybrid fluctuating hydrodynamics and molecular dynamics methodologies. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 88: 023305. PMID 24032964 DOI: 10.1103/PhysRevE.88.023305  0.68
2013 Lin Y, Beckham GT, Himmel ME, Crowley MF, Chu JW. Endoglucanase peripheral loops facilitate complexation of glucan chains on cellulose via adaptive coupling to the emergent substrate structures. The Journal of Physical Chemistry. B. 117: 10750-8. PMID 23972069 DOI: 10.1021/jp405897q  0.68
2013 Shang BZ, Chang R, Chu JW. Systems-level modeling with molecular resolution elucidates the rate-limiting mechanisms of cellulose decomposition by cellobiohydrolases. The Journal of Biological Chemistry. 288: 29081-9. PMID 23950182 DOI: 10.1074/jbc.M113.497412  0.68
2013 Haas KR, Yang H, Chu JW. Expectation-maximization of the potential of mean force and diffusion coefficient in Langevin dynamics from single molecule FRET data photon by photon. The Journal of Physical Chemistry. B. 117: 15591-605. PMID 23937300 DOI: 10.1021/jp405983d  0.68
2013 Gross AS, Bell AT, Chu JW. Preferential interactions between lithium chloride and glucan chains in N,N-dimethylacetamide drive cellulose dissolution. The Journal of Physical Chemistry. B. 117: 3280-6. PMID 23442105 DOI: 10.1021/jp311770u  0.68
2012 Shang BZ, Voulgarakis NK, Chu JW. Fluctuating hydrodynamics for multiscale modeling and simulation: energy and heat transfer in molecular fluids. The Journal of Chemical Physics. 137: 044117. PMID 22852607 DOI: 10.1063/1.4738763  0.68
2012 Chang R, Gross AS, Chu JW. Degree of polymerization of glucan chains shapes the structure fluctuations and melting thermodynamics of a cellulose microfibril. The Journal of Physical Chemistry. B. 116: 8074-83. PMID 22725724 DOI: 10.1021/jp302974x  0.68
2012 Hanson JA, Brokaw J, Hayden CC, Chu JW, Yang H. Structural distributions from single-molecule measurements as a tool for molecular mechanics. Chemical Physics. 396: 61-71. PMID 22661822 DOI: 10.1016/j.chemphys.2011.06.014  0.68
2012 Gross AS, Bell AT, Chu JW. Entropy of cellulose dissolution in water and in the ionic liquid 1-butyl-3-methylimidazolim chloride. Physical Chemistry Chemical Physics : Pccp. 14: 8425-30. PMID 22510706 DOI: 10.1039/c2cp40417f  0.68
2011 Gross AS, Bell AT, Chu JW. Thermodynamics of cellulose solvation in water and the ionic liquid 1-butyl-3-methylimidazolim chloride. The Journal of Physical Chemistry. B. 115: 13433-40. PMID 21950594 DOI: 10.1021/jp202415v  0.68
2011 Lin Y, Silvestre-Ryan J, Himmel ME, Crowley MF, Beckham GT, Chu JW. Protein allostery at the solid-liquid interface: endoglucanase attachment to cellulose affects glucan clenching in the binding cleft. Journal of the American Chemical Society. 133: 16617-24. PMID 21877736 DOI: 10.1021/ja206692g  0.68
2011 Shang BZ, Voulgarakis NK, Chu JW. Fluctuating hydrodynamics for multiscale simulation of inhomogeneous fluids: mapping all-atom molecular dynamics to capillary waves. The Journal of Chemical Physics. 135: 044111. PMID 21806094 DOI: 10.1063/1.3615719  0.68
2011 Cho HM, Gross AS, Chu JW. Dissecting force interactions in cellulose deconstruction reveals the required solvent versatility for overcoming biomass recalcitrance. Journal of the American Chemical Society. 133: 14033-41. PMID 21797215 DOI: 10.1021/ja2046155  0.68
2011 Silvestre-Ryan J, Lin Y, Chu JW. "Fluctuograms" reveal the intermittent intra-protein communication in subtilisin Carlsberg and correlate mechanical coupling with co-evolution. Plos Computational Biology. 7: e1002023. PMID 21455286 DOI: 10.1371/journal.pcbi.1002023  0.44
2010 Gross AS, Chu JW. On the molecular origins of biomass recalcitrance: the interaction network and solvation structures of cellulose microfibrils. The Journal of Physical Chemistry. B. 114: 13333-41. PMID 20883004 DOI: 10.1021/jp106452m  0.68
2009 Brokaw JB, Haas KR, Chu JW. Reaction Path Optimization with Holonomic Constraints and Kinetic Energy Potentials. Journal of Chemical Theory and Computation. 5: 2050-61. PMID 26613147 DOI: 10.1021/ct9001398  0.68
2009 Voulgarakis NK, Satish S, Chu JW. Modeling the nanoscale viscoelasticity of fluids by bridging non-Markovian fluctuating hydrodynamics and molecular dynamics simulations. The Journal of Chemical Physics. 131: 234115. PMID 20025322 DOI: 10.1063/1.3273210  0.68
2009 Haas K, Chu JW. Decomposition of energy and free energy changes by following the flow of work along reaction path. The Journal of Chemical Physics. 131: 144105. PMID 19831431 DOI: 10.1063/1.3243080  0.68
2009 Cho HM, Chu JW. Inversion of radial distribution functions to pair forces by solving the Yvon-Born-Green equation iteratively. The Journal of Chemical Physics. 131: 134107. PMID 19814543 DOI: 10.1063/1.3238547  0.68
2009 Voulgarakis NK, Chu JW. Bridging fluctuating hydrodynamics and molecular dynamics simulations of fluids. The Journal of Chemical Physics. 130: 134111. PMID 19355721 DOI: 10.1063/1.3106717  0.68
2008 Noid WG, Liu P, Wang Y, Chu JW, Ayton GS, Izvekov S, Andersen HC, Voth GA. The multiscale coarse-graining method. II. Numerical implementation for coarse-grained molecular models. The Journal of Chemical Physics. 128: 244115. PMID 18601325 DOI: 10.1063/1.2938857  0.68
2008 Noid WG, Chu JW, Ayton GS, Krishna V, Izvekov S, Voth GA, Das A, Andersen HC. The multiscale coarse-graining method. I. A rigorous bridge between atomistic and coarse-grained models. The Journal of Chemical Physics. 128: 244114. PMID 18601324 DOI: 10.1063/1.2938860  0.68
2008 Gebremichael Y, Chu JW, Voth GA. Intrinsic bending and structural rearrangement of tubulin dimer: molecular dynamics simulations and coarse-grained analysis. Biophysical Journal. 95: 2487-99. PMID 18515385 DOI: 10.1529/biophysj.108.129072  0.68
2007 Hanson JA, Duderstadt K, Watkins LP, Bhattacharyya S, Brokaw J, Chu JW, Yang H. Illuminating the mechanistic roles of enzyme conformational dynamics. Proceedings of the National Academy of Sciences of the United States of America. 104: 18055-60. PMID 17989222 DOI: 10.1073/pnas.0708600104  0.68
2007 Chu JW, Voth GA. Coarse-grained free energy functions for studying protein conformational changes: a double-well network model. Biophysical Journal. 93: 3860-71. PMID 17704151 DOI: 10.1529/biophysj.107.112060  0.68
2006 Chu JW, Voth GA. Coarse-grained modeling of the actin filament derived from atomistic-scale simulations. Biophysical Journal. 90: 1572-82. PMID 16361345 DOI: 10.1529/biophysj.105.073924  0.68
2005 Chu JW, Voth GA. Allostery of actin filaments: molecular dynamics simulations and coarse-grained analysis. Proceedings of the National Academy of Sciences of the United States of America. 102: 13111-6. PMID 16135566 DOI: 10.1073/pnas.0503732102  0.68
2004 Chu JW, Brooks BR, Trout BL. Oxidation of methionine residues in aqueous solutions: free methionine and methionine in granulocyte colony-stimulating factor. Journal of the American Chemical Society. 126: 16601-7. PMID 15600366 DOI: 10.1021/ja0467059  0.68
2004 Chu JW, Trout BL. On the mechanisms of oxidation of organic sulfides by H2O2 in aqueous solutions. Journal of the American Chemical Society. 126: 900-8. PMID 14733566 DOI: 10.1021/ja036762m  0.68
Show low-probability matches.