Cliburn Chan - Publications

Affiliations: 
Computational Biology and Bioinformatics Duke University, Durham, NC 
Area:
Bioinformatics Biology, Immunology, Computer Science

33 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Zhang T, Harrison MR, O'Donnell PH, Alva AS, Hahn NM, Appleman LJ, Cetnar J, Burke JM, Fleming MT, Milowsky MI, Mortazavi A, Shore N, Sonpavde GP, Schmidt EV, Bitman B, ... ... Chan C, et al. A randomized phase 2 trial of pembrolizumab versus pembrolizumab and acalabrutinib in patients with platinum-resistant metastatic urothelial cancer. Cancer. PMID 32757302 DOI: 10.1002/Cncr.33067  0.4
2020 Sung AD, Jauhari S, Siamakpour-Reihani S, Rao AV, Staats J, Chan C, Meyer E, Gadi VK, Nixon AB, Lyu J, Xie J, Bohannon L, Li Z, Hourigan CS, Dillon LW, et al. Microtransplantation in Older Patients with AML: A Pilot Study of Safety, Efficacy and Immunologic Effects. American Journal of Hematology. PMID 32162718 DOI: 10.1002/Ajh.25781  0.4
2019 Yi JS, Rosa-Bray M, Staats J, Zakroysky P, Chan C, Russo MA, Dumbauld C, White S, Gierman T, Weinhold KJ, Guptill JT. Establishment of normative ranges of the healthy human immune system with comprehensive polychromatic flow cytometry profiling. Plos One. 14: e0225512. PMID 31825961 DOI: 10.1371/Journal.Pone.0225512  0.4
2019 Berger M, Murdoch DM, Staats JS, Chan C, Thomas JP, Garrigues GE, Browndyke JN, Cooter M, Quinones QJ, Mathew JP, Weinhold KJ. Flow Cytometry Characterization of Cerebrospinal Fluid Monocytes in Patients With Postoperative Cognitive Dysfunction: A Pilot Study. Anesthesia and Analgesia. PMID 31085945 DOI: 10.1213/Ane.0000000000004179  0.4
2019 Berger M, Oyeyemi D, Olurinde MO, Whitson HE, Weinhold KJ, Woldorff MG, Lipsitz LA, Moretti E, Giattino CM, Roberts KC, Zhou J, Bunning T, Ferrandino M, Scheri RP, Cooter M, ... Chan C, et al. The INTUIT Study: Investigating Neuroinflammation Underlying Postoperative Cognitive Dysfunction. Journal of the American Geriatrics Society. PMID 30674067 DOI: 10.1111/Jgs.15770  0.4
2017 Pedersen NW, Chandran PA, Qian Y, Rebhahn J, Petersen NV, Hoff MD, White S, Lee AJ, Stanton R, Halgreen C, Jakobsen K, Mosmann T, Gouttefangeas C, Chan C, Scheuermann RH, et al. Automated Analysis of Flow Cytometry Data to Reduce Inter-Lab Variation in the Detection of Major Histocompatibility Complex Multimer-Binding T Cells. Frontiers in Immunology. 8: 858. PMID 28798746 DOI: 10.3389/Fimmu.2017.00858  0.44
2015 Zidar DA, Mudd JC, Juchnowski S, Lopes JP, Sparks S, Park SS, Ishikawa M, Osborne R, Washam JB, Chan C, Funderburg NT, Owoyele A, Alaiti MA, Mayuga M, Orringer C, et al. Altered Maturation Status and Possible Immune Exhaustion of CD8 T Lymphocytes in the Peripheral Blood of Patients Presenting With Acute Coronary Syndromes. Arteriosclerosis, Thrombosis, and Vascular Biology. PMID 26663396 DOI: 10.1161/Atvbaha.115.306112  0.4
2015 Snyder LD, Chan C, Kwon D, Yi JS, Martissa JA, Finlen Copeland CA, Osborne RJ, Sparks SD, Palmer SM, Weinhold KJ. Polyfunctional T cell Responses Predict Protection from Cytomegalovirus After Lung Transplant. American Journal of Respiratory and Critical Care Medicine. PMID 26372850 DOI: 10.1164/Rccm.201504-0733Oc  0.4
2015 Lin L, Chan C, West M. Discriminative variable subsets in Bayesian classification with mixture models, with application in flow cytometry studies. Biostatistics (Oxford, England). PMID 26040910 DOI: 10.1093/Biostatistics/Kxv021  0.36
2015 Kvistborg P, Gouttefangeas C, Aghaeepour N, Cazaly A, Chattopadhyay PK, Chan C, Eckl J, Finak G, Hadrup SR, Maecker HT, Maurer D, Mosmann T, Qiu P, Scheuermann RH, Welters MJ, et al. Thinking outside the gate: single-cell assessments in multiple dimensions. Immunity. 42: 591-2. PMID 25902473 DOI: 10.1016/J.Immuni.2015.04.006  0.52
2015 Gouttefangeas C, Chan C, Attig S, Køllgaard TT, Rammensee HG, Stevanović S, Wernet D, thor Straten P, Welters MJ, Ottensmeier C, van der Burg SH, Britten CM. Data analysis as a source of variability of the HLA-peptide multimer assay: from manual gating to automated recognition of cell clusters. Cancer Immunology, Immunotherapy : Cii. 64: 585-98. PMID 25854580 DOI: 10.1007/S00262-014-1649-1  0.44
2015 Gouttefangeas C, Walter S, Welters MJP, Ottensmeier C, Van Der Burg SH, Britten CM, Chan C. Flow cytometry in cancer immunotherapy: Applications, quality assurance, and future Cancer Immunology: a Translational Medicine Context. 471-490. DOI: 10.1007/978-3-662-44006-3_25  0.52
2014 White S, Laske K, Welters MJ, Bidmon N, van der Burg SH, Britten CM, Enzor J, Staats J, Weinhold KJ, Gouttefangeas C, Chan C. Managing Multi-center Flow Cytometry Data for Immune Monitoring. Cancer Informatics. 13: 111-22. PMID 26085786 DOI: 10.4137/Cin.S16346  0.44
2014 Staats JS, Enzor JH, Sanchez AM, Rountree W, Chan C, Jaimes M, Chan RC, Gaur A, Denny TN, Weinhold KJ. Toward development of a comprehensive external quality assurance program for polyfunctional intracellular cytokine staining assays. Journal of Immunological Methods. 409: 44-53. PMID 24968072 DOI: 10.1016/J.Jim.2014.05.021  0.52
2014 Nair SK, Tomaras GD, Sales AP, Boczkowski D, Chan C, Plonk K, Cai Y, Dannull J, Kepler TB, Pruitt SK, Weinhold KJ. High-throughput identification and dendritic cell-based functional validation of MHC class I-restricted Mycobacterium tuberculosis epitopes. Scientific Reports. 4: 4632. PMID 24755960 DOI: 10.1038/Srep04632  0.52
2014 Richards AJ, Staats J, Enzor J, McKinnon K, Frelinger J, Denny TN, Weinhold KJ, Chan C. Setting objective thresholds for rare event detection in flow cytometry. Journal of Immunological Methods. 409: 54-61. PMID 24727143 DOI: 10.1016/J.Jim.2014.04.002  0.52
2013 Cron A, Gouttefangeas C, Frelinger J, Lin L, Singh SK, Britten CM, Welters MJ, van der Burg SH, West M, Chan C. Hierarchical modeling for rare event detection and cell subset alignment across flow cytometry samples. Plos Computational Biology. 9: e1003130. PMID 23874174 DOI: 10.1371/Journal.Pcbi.1003130  0.52
2013 Lin L, Chan C, Hadrup SR, Froesig TM, Wang Q, West M. Hierarchical Bayesian mixture modelling for antigen-specific T-cell subtyping in combinatorially encoded flow cytometry studies. Statistical Applications in Genetics and Molecular Biology. 12: 309-31. PMID 23629459 DOI: 10.1515/Sagmb-2012-0001  0.52
2013 Shetty G, Beasley GM, Sparks S, Barfield M, Masoud M, Mosca PJ, Pruitt SK, Salama AK, Chan C, Tyler DS, Weinhold KJ. Plasma cytokine analysis in patients with advanced extremity melanoma undergoing isolated limb infusion. Annals of Surgical Oncology. 20: 1128-35. PMID 23456379 DOI: 10.1245/S10434-012-2785-5  0.4
2013 Chan C, Billard M, Ramirez SA, Schmidl H, Monson E, Kepler TB. A model for migratory B cell oscillations from receptor down-regulation induced by external chemokine fields. Bulletin of Mathematical Biology. 75: 185-205. PMID 23296998 DOI: 10.1007/S11538-012-9799-9  0.52
2013 Cron A, Gouttefangeas C, Frelinger J, Lin L, Singh SK, Britten CM, Welters MJP, Burg SHvd, West M, Chan C. Comparison of accuracy, reproducibility and linearity of manual gating, DPGMM and HDPGMM. Plos Computational Biology. DOI: 10.1371/Journal.Pcbi.1003130.G007  0.52
2011 Snyder LD, Medinas R, Chan C, Sparks S, Davis WA, Palmer SM, Weinhold KJ. Polyfunctional cytomegalovirus-specific immunity in lung transplant recipients receiving valganciclovir prophylaxis. American Journal of Transplantation : Official Journal of the American Society of Transplantation and the American Society of Transplant Surgeons. 11: 553-60. PMID 21219584 DOI: 10.1111/J.1600-6143.2010.03405.X  0.52
2010 Chan C, Lin L, Frelinger J, Hérbert V, Gagnon D, Landry C, Sékaly RP, Enzor J, Staats J, Weinhold KJ, Jaimes M, West M. Optimization of a highly standardized carboxyfluorescein succinimidyl ester flow cytometry panel and gating strategy design using discriminative information measure evaluation. Cytometry. Part a : the Journal of the International Society For Analytical Cytology. 77: 1126-36. PMID 21053294 DOI: 10.1002/Cyto.A.20987  0.52
2010 Suchard MA, Wang Q, Chan C, Frelinger J, Cron A, West M. Understanding GPU Programming for Statistical Computation: Studies in Massively Parallel Massive Mixtures. Journal of Computational and Graphical Statistics : a Joint Publication of American Statistical Association, Institute of Mathematical Statistics, Interface Foundation of North America. 19: 419-438. PMID 20877443 DOI: 10.1198/Jcgs.2010.10016  0.52
2010 Manolopoulou I, Chan C, West M. Selection Sampling from Large Data Sets for Targeted Inference in Mixture Modeling. Bayesian Analysis (Online). 5: 1-22. PMID 20865145 DOI: 10.1214/10-Ba517  0.52
2010 Frelinger J, Ottinger J, Gouttefangeas C, Chan C. Modeling flow cytometry data for cancer vaccine immune monitoring. Cancer Immunology, Immunotherapy : Cii. 59: 1435-41. PMID 20563720 DOI: 10.1007/S00262-010-0883-4  0.52
2008 Frelinger J, Kepler TB, Chan C. Flow: Statistics, visualization and informatics for flow cytometry. Source Code For Biology and Medicine. 3: 10. PMID 18559108 DOI: 10.1186/1751-0473-3-10  0.52
2008 Chan C, Feng F, Ottinger J, Foster D, West M, Kepler TB. Statistical mixture modeling for cell subtype identification in flow cytometry. Cytometry. Part a : the Journal of the International Society For Analytical Cytology. 73: 693-701. PMID 18496851 DOI: 10.1002/Cyto.A.20583  0.52
2008 Mitha F, Lucas TA, Feng F, Kepler TB, Chan C. The Multiscale Systems Immunology project: software for cell-based immunological simulation. Source Code For Biology and Medicine. 3: 6. PMID 18442405 DOI: 10.1186/1751-0473-3-6  0.52
2007 Kepler TB, Chan C. Spatiotemporal programming of a simple inflammatory process. Immunological Reviews. 216: 153-63. PMID 17367341 DOI: 10.1111/J.1600-065X.2007.00500.X  0.52
2007 Chan C, Kepler TB. Computational immunology--from bench to virtual reality. Annals of the Academy of Medicine, Singapore. 36: 123-7. PMID 17364079  0.52
2005 Tan PH, Yates JB, Xue SA, Chan C, Jordan WJ, Harper JE, Watson MP, Dong R, Ritter MA, Lechler RI, Lombardi G, George AJ. Creation of tolerogenic human dendritic cells via intracellular CTLA4: a novel strategy with potential in clinical immunosuppression. Blood. 106: 2936-43. PMID 15994283 DOI: 10.1182/Blood-2005-05-1826  0.52
2005 Yates AJ, Chan CCT, Callard RE. 16 Modelling T cell activation, proliferation, and homeostasis Studies in Multidisciplinarity. 3: 281-308. DOI: 10.1016/S1571-0831(06)80020-1  0.52
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