| Year |
Citation |
Score |
| 2005 |
Voerman G, Cavalli S, van der Marel GA, Pfleiderer W, van Boom JH, Filippov DV. 1,3-Dimethyllumazine derivatives from Limnatis nilotica. Journal of Natural Products. 68: 938-41. PMID 15974624 DOI: 10.1021/np049617a |
0.421 |
|
| 2005 |
Codée JD, Stubba B, Schiattarella M, Overkleeft HS, van Boeckel CA, van Boom JH, van der Marel GA. A modular strategy toward the synthesis of heparin-like oligosaccharides using monomeric building blocks in a sequential glycosylation strategy. Journal of the American Chemical Society. 127: 3767-73. PMID 15771511 DOI: 10.1021/ja045613g |
0.641 |
|
| 2005 |
Timmer MSM, Chumillas MV, Donker-Koopman WE, Aerts JMFG, Van Der Marel GA, Overkleeft HS, Van Boom JH. Selective cross-metathesis of C-allyl-glycosides Journal of Carbohydrate Chemistry. 24: 335-351. DOI: 10.1080/07328300500174887 |
0.371 |
|
| 2004 |
Welters MJ, Filippov DV, van den Eeden SJ, Franken KL, Nouta J, Valentijn AR, van der Marel GA, Overkleeft HS, Lipford G, Offringa R, Melief CJ, van Boom JH, van der Burg SH, Drijfhout JW. Chemically synthesized protein as tumour-specific vaccine: immunogenicity and efficacy of synthetic HPV16 E7 in the TC-1 mouse tumour model. Vaccine. 23: 305-11. PMID 15530672 DOI: 10.1016/J.Vaccine.2004.06.008 |
0.336 |
|
| 2004 |
Grotenbreg GM, Kronemeijer M, Timmer MS, El Oualid F, van Well RM, Verdoes M, Spalburg E, van Hooft PA, de Neeling AJ, Noort D, van Boom JH, van der Marel GA, Overkleeft HS, Overhand M. A practical synthesis of gramicidin s and sugar amino Acid containing analogues. The Journal of Organic Chemistry. 69: 7851-9. PMID 15527261 DOI: 10.1021/Jo0487449 |
0.417 |
|
| 2004 |
van den Berg RJ, Korevaar CG, Overkleeft HS, van der Marel GA, van Boom JH. Effective, high-yielding, and stereospecific total synthesis of D-erythro-(2R,3S)-sphingosine from D-ribo-(2S,3S,4R)-phytosphingosine. The Journal of Organic Chemistry. 69: 5699-704. PMID 15307742 DOI: 10.1021/jo049277y |
0.41 |
|
| 2004 |
El Oualid F, Burm BE, Leroy IM, Cohen LH, van Boom JH, van den Elst H, Overkleeft HS, van der Marel GA, Overhand M. Design, synthesis, and evaluation of sugar amino acid based inhibitors of protein prenyl transferases PFT and PGGT-1. Journal of Medicinal Chemistry. 47: 3920-3. PMID 15267228 DOI: 10.1021/Jm049927Q |
0.382 |
|
| 2004 |
Tromp RA, van Boom SS, Marco Timmers C, van Zutphen S, van der Marel GA, Overkleeft HS, van Boom JH, Reedijk J. The beta-glucuronyl-based prodrug strategy allows for its application on beta-glucuronyl-platinum conjugates. Bioorganic & Medicinal Chemistry Letters. 14: 4273-6. PMID 15261285 DOI: 10.1016/J.Bmcl.2004.06.015 |
0.349 |
|
| 2004 |
van Roon AM, Pannu NS, de Vrind JP, van der Marel GA, van Boom JH, Hokke CH, Deelder AM, Abrahams JP. Structure of an anti-Lewis X Fab fragment in complex with its Lewis X antigen. Structure (London, England : 1993). 12: 1227-36. PMID 15242599 DOI: 10.1016/j.str.2004.05.008 |
0.401 |
|
| 2004 |
Verhelst SH, Michiels PJ, van der Marel GA, van Boeckel CA, van Boom JH. Surface plasmon resonance evaluation of various aminoglycoside-RNA hairpin interactions reveals low degree of selectivity. Chembiochem : a European Journal of Chemical Biology. 5: 937-42. PMID 15239050 DOI: 10.1002/cbic.200300819 |
0.394 |
|
| 2004 |
van den Bos LJ, Codée JD, van der Toorn JC, Boltje TJ, van Boom JH, Overkleeft HS, van der Marel GA. Thioglycuronides: synthesis and application in the assembly of acidic oligosaccharides. Organic Letters. 6: 2165-8. PMID 15200311 DOI: 10.1021/ol049380+ |
0.63 |
|
| 2004 |
Petersen L, de Koning MC, van Kuik-Romeijn P, Weterings J, Pol CJ, Platenburg G, Overhand M, van der Marel GA, van Boom JH. Synthesis and in vitro evaluation of PNA-peptide-DETA conjugates as potential cell penetrating artificial ribonucleases. Bioconjugate Chemistry. 15: 576-82. PMID 15149186 DOI: 10.1021/Bc034219P |
0.415 |
|
| 2004 |
van Hooft PA, El Oualid F, Overkleeft HS, van der Marel GA, van Boom JH, Leeuwenburgh MA. Synthesis and elaboration of functionalised carbohydrate-derived spiroketals. Organic & Biomolecular Chemistry. 2: 1395-403. PMID 15105932 DOI: 10.1039/b401699h |
0.41 |
|
| 2004 |
Gómez-Pinto I, Cubero E, Kalko SG, Monaco V, van der Marel G, van Boom JH, Orozco M, González C. Effect of bulky lesions on DNA: solution structure of a DNA duplex containing a cholesterol adduct. The Journal of Biological Chemistry. 279: 24552-60. PMID 15047709 DOI: 10.1074/jbc.M311751200 |
0.37 |
|
| 2003 |
van den Bos LJ, Codée JD, van Boom JH, Overkleeft HS, van der Marel GA. A novel strategy towards the synthesis of orthogonally functionalised 4-aminoglycosides. Organic & Biomolecular Chemistry. 1: 4160-5. PMID 14685319 DOI: 10.1039/b309823k |
0.644 |
|
| 2003 |
Verhelst SH, Paez Martinez B, Timmer MS, Lodder G, van der Marel GA, Overkleeft HS, van Boom JH. A short route toward chiral, polyhydroxylated indolizidines and quinolizidines. The Journal of Organic Chemistry. 68: 9598-603. PMID 14656083 DOI: 10.1021/jo0350662 |
0.382 |
|
| 2003 |
Timmer MS, Verdoes M, Sliedregt LA, van der Marel GA, van Boom JH, Overkleeft HS. The use of a mannitol-derived fused oxacycle as a combinatorial scaffold. The Journal of Organic Chemistry. 68: 9406-11. PMID 14629165 DOI: 10.1021/jo0349429 |
0.442 |
|
| 2003 |
van Rossenberg SM, Sliedregt-Bol KM, Prince P, van Berkel TJ, van Boom JH, van der Marel GA, Biessen EA. A targeted peptide nucleic acid to down-regulate mouse microsomal triglyceride transfer protein expression in hepatocytes. Bioconjugate Chemistry. 14: 1077-82. PMID 14624620 DOI: 10.1021/bc0340417 |
0.37 |
|
| 2003 |
Robillard MS, Bacac M, van den Elst H, Flamigni A, van der Marel GA, van Boom JH, Reedijk J. Automated parallel solid-phase synthesis and anticancer screening of a library of peptide-tethered platinum(II) complexes. Journal of Combinatorial Chemistry. 5: 821-5. PMID 14606811 DOI: 10.1021/Cc030011Z |
0.388 |
|
| 2003 |
van Well RM, Marinelli L, Altona C, Erkelens K, Siegal G, van Raaij M, Llamas-Saiz AL, Kessler H, Novellino E, Lavecchia A, van Boom JH, Overhand M. Conformational analysis of furanoid epsilon-sugar amino acid containing cyclic peptides by NMR spectroscopy, molecular dynamics simulation, and X-ray crystallography: evidence for a novel turn structure. Journal of the American Chemical Society. 125: 10822-9. PMID 12952461 DOI: 10.1021/JA035461+ |
0.575 |
|
| 2003 |
Aguilera B, Ghauharali-van der Vlugt K, Helmond MT, Out JM, Donker-Koopman WE, Groener JE, Boot RG, Renkema GH, van der Marel GA, van Boom JH, Overkleeft HS, Aerts JM. Transglycosidase activity of chitotriosidase: improved enzymatic assay for the human macrophage chitinase. The Journal of Biological Chemistry. 278: 40911-6. PMID 12890686 DOI: 10.1074/Jbc.M301804200 |
0.348 |
|
| 2003 |
Robillard MS, Davies NP, van der Marel GA, van Boom JH, Reedijk J, Murray V. The interaction of peptide-tethered platinum(II) complexes with DNA. Journal of Inorganic Biochemistry. 96: 331-8. PMID 12888268 DOI: 10.1016/S0162-0134(03)00180-6 |
0.451 |
|
| 2003 |
van Rossenberg SM, Sliedregt-Bol KM, Koning G, van den Elst H, van Berkel TJ, van Boom JH, van der Marel GA, Biessen EA. Improvement of hepatocyte-specific gene expression by a targeted colchicine prodrug. Chembiochem : a European Journal of Chemical Biology. 4: 633-9. PMID 12851933 DOI: 10.1002/cbic.200300582 |
0.382 |
|
| 2003 |
Grotenbreg GM, Spalburg E, de Neeling AJ, van der Marel GA, Overkleeft HS, van Boom JH, Overhand M. Synthesis and biological evaluation of novel turn-modified gramicidin S analogues. Bioorganic & Medicinal Chemistry. 11: 2835-41. PMID 12788356 DOI: 10.1016/S0968-0896(03)00219-0 |
0.402 |
|
| 2003 |
Codée JD, van den Bos LJ, Litjens RE, Overkleeft HS, van Boom JH, van der Marel GA. Sequential one-pot glycosylations using 1-hydroxyl and 1-thiodonors. Organic Letters. 5: 1947-50. PMID 12762693 DOI: 10.1021/ol034528v |
0.635 |
|
| 2003 |
de Visser PC, Kriek NM, van Hooft PA, Van Schepdael A, Filippov DV, van der Marel GA, Overkleeft HS, van Boom JH, Noort D. Solid-phase synthesis of polymyxin B1 and analogues via a safety-catch approach. The Journal of Peptide Research : Official Journal of the American Peptide Society. 61: 298-306. PMID 12753377 DOI: 10.1034/j.1399-3011.2003.00061.x |
0.42 |
|
| 2003 |
Codée JD, Litjens RE, den Heeten R, Overkleeft HS, van Boom JH, van der Marel GA. Ph2SO/Tf2O: a powerful promotor system in chemoselective glycosylations using thioglycosides. Organic Letters. 5: 1519-22. PMID 12713313 DOI: 10.1021/ol034312t |
0.628 |
|
| 2003 |
Heetebrij RJ, de Kort M, Meeuwenoord NJ, den Dulk H, van der Marel GA, van Boom JH, Reedijk J. A versatile approach towards regioselective platinated DNA sequences. Chemistry (Weinheim An Der Bergstrasse, Germany). 9: 1823-7. PMID 12698440 DOI: 10.1002/Chem.200390209 |
0.44 |
|
| 2003 |
van Well RM, Overkleeft HS, van der Marel GA, Bruss D, Thibault G, de Groot PG, van Boom JH, Overhand M. Solid-phase synthesis of cyclic RGD-furanoid sugar amino acid peptides as integrin inhibitors. Bioorganic & Medicinal Chemistry Letters. 13: 331-4. PMID 12565923 DOI: 10.1016/S0960-894X(02)01022-3 |
0.37 |
|
| 2003 |
Leeuwenburgh MA, Van Der Marel GA, Overkleeft HS, Van Boom JH. From α-1,2-Anhydrosugars to C-Glycosides: The Influence of Lewis Acids and Nucleophiles on the Stereochemistry Journal of Carbohydrate Chemistry. 22: 549-564. DOI: 10.1081/CAR-120026458 |
0.373 |
|
| 2002 |
Schmidt KS, Boudvillain M, Schwartz A, van der Marel GA, van Boom JH, Reedijk J, Lippert B. Monofunctionally trans-diammine platinum(II)-modified peptide nucleic acid oligomers: a new generation of potential antisense drugs. Chemistry (Weinheim An Der Bergstrasse, Germany). 8: 5566-70. PMID 12458496 DOI: 10.1002/1521-3765(20021216)8:24<5566::Aid-Chem5566>3.0.Co;2-# |
0.442 |
|
| 2002 |
Van Rossenberg SM, Sliedregt-Bol KM, Meeuwenoord NJ, Van Berkel TJ, Van Boom JH, Van Der Marel GA, Biessen EA. Targeted lysosome disruptive elements for improvement of parenchymal liver cell-specific gene delivery. The Journal of Biological Chemistry. 277: 45803-10. PMID 12237290 DOI: 10.1074/jbc.M203510200 |
0.358 |
|
| 2002 |
Rapozzi V, Burm BE, Cogoi S, van der Marel GA, van Boom JH, Quadrifoglio F, Xodo LE. Antiproliferative effect in chronic myeloid leukaemia cells by antisense peptide nucleic acids. Nucleic Acids Research. 30: 3712-21. PMID 12202756 |
0.409 |
|
| 2002 |
Verhoeven EE, van Kesteren M, Turner JJ, van der Marel GA, van Boom JH, Moolenaar GF, Goosen N. The C-terminal region of Escherichia coli UvrC contributes to the flexibility of the UvrABC nucleotide excision repair system. Nucleic Acids Research. 30: 2492-500. PMID 12034838 DOI: 10.1093/Nar/30.11.2492 |
0.497 |
|
| 2002 |
Sabatini R, Meeuwenoord N, van Boom JH, Borst P. Site-specific interactions of JBP with base and sugar moieties in duplex J-DNA. Evidence for both major and minor groove contacts. The Journal of Biological Chemistry. 277: 28150-6. PMID 12029082 DOI: 10.1074/Jbc.M201487200 |
0.321 |
|
| 2002 |
Ouwerkerk N, Steenweg M, de Ruijter M, Brouwer J, van Boom JH, Lugtenburg J, Raap J. One-pot two-step enzymatic coupling of pyrimidine bases to 2-deoxy-D-ribose-5-phosphate. A new strategy in the synthesis of stable isotope labeled deoxynucleosides. The Journal of Organic Chemistry. 67: 1480-9. PMID 11871876 DOI: 10.1021/Jo0107249 |
0.753 |
|
| 2002 |
Sabatini R, Meeuwenoord N, van Boom JH, Borst P. Recognition of base J in duplex DNA by J-binding protein. The Journal of Biological Chemistry. 277: 958-66. PMID 11700315 DOI: 10.1074/Jbc.M109000200 |
0.314 |
|
| 2001 |
Soliva R, Monaco V, Gómez-Pinto I, Meeuwenoord NJ, Van Der Marel GA, Van Boom JH, González C, Orozco M. Solution structure of a DNA duplex with a chiral alkyl phosphonate moiety Nucleic Acids Research. 29: 2973-2985. PMID 11452022 DOI: 10.1093/Nar/29.14.2973 |
0.371 |
|
| 2001 |
Aguilera B, Wolf LB, Nieczypor P, Rutjes FP, Overkleeft HS, van Hest JC, Schoemaker HE, Wang B, Mol JC, Fürstner A, Overhand M, van der Marel GA, van Boom JH. Synthesis of diaminosuberic acid derivatives via ring-closing alkyne metathesis. The Journal of Organic Chemistry. 66: 3584-9. PMID 11348148 DOI: 10.1021/Jo001734X |
0.389 |
|
| 2001 |
Sliedregt LA, van Rossenberg SM, Autar R, Valentijn AR, van der Marel GA, van Boom JH, Piperi C, van der Merwe PA, Kuiper J, van Berkel TJ, Biessen EA. Design and synthesis of a multivalent homing device for targeting to murine CD22. Bioorganic & Medicinal Chemistry. 9: 85-97. PMID 11197350 DOI: 10.1016/S0968-0896(00)00224-8 |
0.363 |
|
| 2001 |
Cogoi S, Suraci C, Del Terra E, Diviacco S, van der Marel G, van Boom J, Quadrifoglio F, Xodo L. Downregulation of c-Ki-ras promoter activity by triplex-forming oligonucleotides endogenously generated in human 293 cells. Antisense & Nucleic Acid Drug Development. 10: 283-95. PMID 10984122 DOI: 10.1089/108729000421466 |
0.405 |
|
| 2001 |
De Kort M, De Visser PC, Kurzeck J, Meeuwenoord NJ, Van Der Marel GA, Rüger W, Van Boom JH. Chemical and enzymatic synthesis of DNA fragments containing 5-(β-D-glucopyranosyloxymethyl)-2′-deoxycytidine - A modified nucleoside in T4 phage DNA European Journal of Organic Chemistry. 2075-2082. |
0.322 |
|
| 2000 |
Verheijen JC, Chen L, Bayly SF, Torrence PF, van der Marel GA, van Boom JH. Synthesis and RNAse L binding and activation of a 2-5A-(5')-DNA-(3')-PNA chimera, a novel potential antisense molecule. Nucleosides, Nucleotides & Nucleic Acids. 19: 1821-30. PMID 11200276 DOI: 10.1080/15257770008045463 |
0.457 |
|
| 2000 |
Verheijen JC, van Der Marel GA, van Boom JH, Metzler-Nolte N. Transition metal derivatives of peptide nucleic acid (PNA) oligomers-synthesis, characterization, and DNA binding. Bioconjugate Chemistry. 11: 741-3. PMID 11087319 DOI: 10.1021/bc0000740 |
0.49 |
|
| 2000 |
de Kort M, Regenbogen AD, Valentijn AR, Challiss RA, Iwata Y, Miyamoto S, van der Marel GA, van Boom JH. Spirophostins: conformationally restricted analogues of adenophostin A. Chemistry (Weinheim An Der Bergstrasse, Germany). 6: 2696-704. PMID 10985718 DOI: 10.1002/1521-3765(20000804)6:15<2696::AID-CHEM2696>3.0.CO;2-Y |
0.41 |
|
| 2000 |
de Kort M, Correa V, Valentijn AR, van der Marel GA, Potter BV, Taylor CW, van Boom JH. Synthesis of potent agonists of the D-myo-inositol 1,4, 5-trisphosphate receptor based on clustered disaccharide polyphosphate analogues of adenophostin A. Journal of Medicinal Chemistry. 43: 3295-303. PMID 10966748 DOI: 10.1021/Jm000957C |
0.415 |
|
| 2000 |
Verheijen JC, van Roon AM, Meeuwenoord NJ, Stuivenberg HR, Bayly SF, Chen L, van der Marel GA, Torrence PF, van Boom JH. Incorporation of a 4-hydroxy-N-acetylprolinol nucleotide analogue improves the 3'-exonuclease stability of 2'-5'-oligoadenylate-antisense conjugates. Bioorganic & Medicinal Chemistry Letters. 10: 801-4. PMID 10782690 DOI: 10.1016/S0960-894X(00)00100-1 |
0.481 |
|
| 2000 |
Moolenaar GF, Herron MF, Monaco V, van der Marel GA, van Boom JH, Visse R, Goosen N. The role of ATP binding and hydrolysis by UvrB during nucleotide excision repair. The Journal of Biological Chemistry. 275: 8044-50. PMID 10713125 DOI: 10.1074/Jbc.275.11.8044 |
0.488 |
|
| 2000 |
Moolenaar GF, Monaco V, van der Marel GA, van Boom JH, Visse R, Goosen N. The effect of the DNA flanking the lesion on formation of the UvrB-DNA preincision complex. Mechanism for the UvrA-mediated loading of UvrB onto a DNA damaged site. The Journal of Biological Chemistry. 275: 8038-43. PMID 10713124 DOI: 10.1074/Jbc.275.11.8038 |
0.477 |
|
| 2000 |
Ouwerkerk N, Van Boom JH, Lugtenburg J, Raap J. Chemo-enzymatic synthesis of thymidine 13C-labelled in the 2'- deoxyribose moiety European Journal of Organic Chemistry. 861-866. DOI: 10.1002/(Sici)1099-0690(200003)2000:5<861::Aid-Ejoc861>3.0.Co;2-E |
0.744 |
|
| 1999 |
Cross M, Kieft R, Sabatini R, Wilm M, de Kort M, van der Marel GA, van Boom JH, van Leeuwen F, Borst P. The modified base J is the target for a novel DNA-binding protein in kinetoplastid protozoans. The Embo Journal. 18: 6573-81. PMID 10562569 DOI: 10.1093/Emboj/18.22.6573 |
0.484 |
|
| 1999 |
Buijsman RC, Basten JE, Dreef-Tromp CM, van der Marel GA, van Boeckel CA, van Boom JH. Synthesis of heparin-like antithrombotics having perphosphorylated thrombin binding domains. Bioorganic & Medicinal Chemistry. 7: 1881-90. PMID 10530936 DOI: 10.1016/S0968-0896(99)00139-X |
0.381 |
|
| 1999 |
van Dongen MJ, Doreleijers JF, van der Marel GA, van Boom JH, Hilbers CW, Wijmenga SS. Structure and mechanism of formation of the H-y5 isomer of an intramolecular DNA triple helix. Nature Structural Biology. 6: 854-9. PMID 10467098 DOI: 10.1038/12313 |
0.575 |
|
| 1999 |
Buijsman RC, Basten JE, van Dinther TG, van der Marel GA, van Boeckel CA, van Boom JH. Design and synthesis of a novel synthetic NAPAP-penta-saccharide conjugate displaying a dual antithrombotic action. Bioorganic & Medicinal Chemistry Letters. 9: 2013-8. PMID 10450972 DOI: 10.1016/S0960-894X(99)00320-0 |
0.417 |
|
| 1999 |
Verheijen JC, van der Marel GA, van Boom JH, Bayly SF, Player MR, Torrence PF. 2,5-oligoadenylate-peptide nucleic acids (2-5A-PNAs) activate RNase L. Bioorganic & Medicinal Chemistry. 7: 449-55. PMID 10220031 DOI: 10.1016/S0968-0896(98)00258-2 |
0.393 |
|
| 1999 |
Beecroft MD, Marchant JS, Riley AM, Van Straten NC, Van der Marel GA, Van Boom JH, Potter BV, Taylor CW. Acyclophostin: a ribose-modified analog of adenophostin A with high affinity for inositol 1,4,5-trisphosphate receptors and pH-dependent efficacy. Molecular Pharmacology. 55: 109-17. PMID 9882704 DOI: 10.1124/Mol.55.1.109 |
0.372 |
|
| 1998 |
van der Laan AC, Havenaar P, Oosting RS, Kuyl-Yeheskiely E, Uhlmann E, van Boom JH. Optimization of the binding properties of PNA-(5')-DNA chimerae. Bioorganic & Medicinal Chemistry Letters. 8: 663-8. PMID 9871579 DOI: 10.1016/S0960-894X(98)00088-2 |
0.31 |
|
| 1998 |
Gao YG, Robinson H, Guan Y, Liaw YC, van Boom JH, van der Marel GA, Wang AH. Molecular structure of two crystal forms of cyclic triadenylic acid at 1A resolution. Journal of Biomolecular Structure & Dynamics. 16: 69-76. PMID 9745896 DOI: 10.1080/07391102.1998.10508228 |
0.502 |
|
| 1998 |
van Leeuwen F, de Kort M, van der Marel GA, van Boom JH, Borst P. The modified DNA base beta-D-glucosylhydroxymethyluracil confers resistance to micrococcal nuclease and is incompletely recovered by 32P-postlabeling. Analytical Biochemistry. 258: 223-9. PMID 9570833 DOI: 10.1006/Abio.1998.2587 |
0.308 |
|
| 1998 |
Ippel HH, Van Elst HD, Van Der Marel GA, Van Boom JH, Altona C. Structural similarities and differences between H1- and H2-family DNA minihairpin loops: NMR studies of octameric minihairpins Biopolymers. 46: 375-393. DOI: 10.1002/(SICI)1097-0282(199811)46:6<375::AID-BIP3>3.0.CO;2-6 |
0.572 |
|
| 1997 |
van Dongen MJ, Mooren MM, Willems EF, van der Marel GA, van Boom JH, Wijmenga SS, Hilbers CW. Structural features of the DNA hairpin d(ATCCTA-GTTA-TAGGAT): formation of a G-A base pair in the loop. Nucleic Acids Research. 25: 1537-47. PMID 9092659 DOI: 10.1093/nar/25.8.1537 |
0.682 |
|
| 1997 |
Slijper M, Boelens R, Davis AL, Konings RN, van der Marel GA, van Boom JH, Kaptein R. Backbone and side chain dynamics of lac repressor headpiece (1-56) and its complex with DNA. Biochemistry. 36: 249-54. PMID 8993340 DOI: 10.1021/Bi961670D |
0.529 |
|
| 1996 |
van Delft FL, de Kort M, van Der Marel GA, van Boom JH. Use of a Novel alpha-Hydroxyethylating Reagent in the Stereoselective Synthesis of Lincosamine. The Journal of Organic Chemistry. 61: 1883-1885. PMID 11667071 |
0.349 |
|
| 1996 |
Zegelaar-Jaarsveld K, Smits SA, van der Marel GA, van Boom JH. Synthesis of a pentasaccharide corresponding to the repeating unit of the exopolysaccharide from Cryptococcus neoformans serovar D. Bioorganic & Medicinal Chemistry. 4: 1819-32. PMID 9007267 DOI: 10.1016/S0968-0896(96)00164-2 |
0.439 |
|
| 1996 |
Ohishi H, Terasoma N, Nakanishi I, van der Marel G, van Boom JH, Rich A, Wang AH, Hakoshima T, Tomita K. Interaction between left-handed Z-DNA and polyamine - 3. The crystal structure of the d(CG)3 and thermospermine complex. Febs Letters. 398: 291-6. PMID 8977125 DOI: 10.1016/S0014-5793(96)01225-2 |
0.616 |
|
| 1996 |
van Dongen MJ, Wijmenga SS, van der Marel GA, van Boom JH, Hilbers CW. The transition from a neutral-pH double helix to a low-pH triple helix induces a conformational switch in the CCCG tetraloop closing a Watson-Crick stem. Journal of Molecular Biology. 263: 715-29. PMID 8947571 DOI: 10.1006/jmbi.1996.0611 |
0.69 |
|
| 1996 |
Pikkemaat JA, Overmars FJ, Dreef-Tromp CM, van den Elst H, van Boom JH, Altona C. Conformational aspects of an uncharged phosphate analogon built in at the branch-point of a DNA four-way junction. Journal of Molecular Biology. 262: 349-57. PMID 8845000 DOI: 10.1006/jmbi.1996.0518 |
0.586 |
|
| 1996 |
Ohishi H, Nakanishi I, Inubushi K, van der Marel G, van Boom JH, Rich A, Wang AH, Hakoshima T, Tomita K. Interaction between the left-handed Z-DNA and polyamine-2. The crystal structure of the d(CG)3 and spermidine complex. Febs Letters. 391: 153-6. PMID 8706905 DOI: 10.1016/0014-5793(96)00723-5 |
0.604 |
|
| 1996 |
van Leeuwen F, Wijsman ER, Kuyl-Yeheskiely E, van der Marel GA, van Boom JH, Borst P. The telomeric GGGTTA repeats of Trypanosoma brucei contain the hypermodified base J in both strands. Nucleic Acids Research. 24: 2476-82. PMID 8692684 DOI: 10.1093/Nar/24.13.2476 |
0.306 |
|
| 1996 |
van Dongen MJ, Heus HA, Wymenga SS, van der Marel GA, van Boom JH, Hilbers CW. Unambiguous structure characterization of a DNA-RNA triple helix by 15N- and 13C-filtered NOESY spectroscopy. Biochemistry. 35: 1733-9. PMID 8639652 DOI: 10.1021/bi952002f |
0.676 |
|
| 1996 |
Overmars FJ, Pikkemaat JA, van den Elst H, van Boom JH, Altona C. NMR studies of DNA three-way junctions containing two unpaired thymidine bases: the influence of the sequence at the junction on the stability of the stacking conformers. Journal of Molecular Biology. 255: 702-13. PMID 8636972 DOI: 10.1006/jmbi.1996.0057 |
0.636 |
|
| 1996 |
Ippel JH, Wijmenga SS, De Jong R, Heus HA, Hilbers CW, De Vroom E, Van Der Marel GA, Van Boom JH. Heteronuclear scalar couplings in the bases and sugar rings of nucleic acids: Their determination and application in assignment and conformational analysis Magnetic Resonance in Chemistry. 34: S156-S176. DOI: 10.1002/(Sici)1097-458X(199612)34:133.0.Co;2-U |
0.536 |
|
| 1995 |
Gao YG, Robinson H, van Boom JH, Wang AH. Influence of counter-ions on the crystal structures of DNA decamers: binding of [Co(NH3)6]3+ and Ba2+ to A-DNA. Biophysical Journal. 69: 559-68. PMID 8527670 DOI: 10.1016/S0006-3495(95)79929-5 |
0.374 |
|
| 1995 |
Yang D, van Boom SS, Reedijk J, van Boom JH, Farrell N, Wang AH. A novel DNA structure induced by the anticancer bisplatinum compound crosslinked to a GpC site in DNA. Nature Structural Biology. 2: 577-8. PMID 7664126 DOI: 10.1038/Nsb0795-577 |
0.341 |
|
| 1995 |
Yang D, van Boom SS, Reedijk J, van Boom JH, Wang AH. Structure and isomerization of an intrastrand cisplatin-cross-linked octamer DNA duplex by NMR analysis. Biochemistry. 34: 12912-20. PMID 7548048 DOI: 10.1021/Bi00039A054 |
0.311 |
|
| 1995 |
Bloemberg GV, Lagas RM, van Leeuwen S, Van der Marel GA, Van Boom JH, Lugtenberg BJ, Spaink HP. Substrate specificity and kinetic studies of nodulation protein NodL of Rhizobium leguminosarum. Biochemistry. 34: 12712-20. PMID 7548024 DOI: 10.1021/Bi00039A030 |
0.408 |
|
| 1994 |
Mooren MM, Wijmenga SS, van der Marel GA, van Boom JH, Hilbers CW. The solution structure of the circular trinucleotide cr(GpGpGp) determined by NMR and molecular mechanics calculation. Nucleic Acids Research. 22: 2658-66. PMID 8041628 |
0.581 |
|
| 1994 |
Pikkemaat JA, van den Elst H, van Boom JH, Altona C. NMR studies and conformational analysis of a DNA four-way junction formed in a linear synthetic oligonucleotide. Biochemistry. 33: 14896-907. PMID 7993916 |
0.625 |
|
| 1994 |
Vega MC, García Sáez I, Aymamí J, Eritja R, Van der Marel GA, Van Boom JH, Rich A, Coll M. Three-dimensional crystal structure of the A-tract DNA dodecamer d(CGCAAATTTGCG) complexed with the minor-groove-binding drug Hoechst 33258. European Journal of Biochemistry / Febs. 222: 721-6. PMID 7517864 DOI: 10.1111/j.1432-1033.1994.tb18917.x |
0.613 |
|
| 1994 |
Wijmenga SS, Heus HA, Werten B, van der Marel GA, van Boom JH, Hilbers CW. Assignment strategies and analysis of cross-peak patterns and intensities in the three-dimensional homonuclear TOCSY-NOESY of RNA. Journal of Magnetic Resonance. Series B. 103: 134-41. PMID 7511032 DOI: 10.1006/jmrb.1994.1021 |
0.657 |
|
| 1993 |
Zhang H, Gao YG, van der Marel GA, van Boom JH, Wang AH. Simultaneous incorporations of two anticancer drugs into DNA. The structures of formaldehyde-cross-linked adducts of daunorubicin-d(CG(araC)GCG) and doxorubicin-d(CA(araC)GTG) complexes at high resolution. The Journal of Biological Chemistry. 268: 10095-101. PMID 8486678 |
0.344 |
|
| 1993 |
Zuurmond HM, Veeneman GH, van der Marel GA, van Boom JH. Iodonium ion-assisted synthesis of a haptenic tetrasaccharide fragment corresponding to the inner cell-wall glycopeptidolipid of Mycobacterium avium serotype 4. Carbohydrate Research. 241: 153-64. PMID 8472251 |
0.349 |
|
| 1993 |
Folkers PJ, van Duynhoven JP, van Lieshout HT, Harmsen BJ, van Boom JH, Tesser GI, Konings RN, Hilbers CW. Exploring the DNA binding domain of gene V protein encoded by bacteriophage M13 with the aid of spin-labeled oligonucleotides in combination with 1H-NMR. Biochemistry. 32: 9407-16. PMID 8396429 DOI: 10.1021/Bi00087A020 |
0.581 |
|
| 1993 |
Tabernero L, Verdaguer N, Coll M, Fita I, van der Marel GA, van Boom JH, Rich A, Aymamí J. Molecular structure of the A-tract DNA dodecamer d(CGCAAATTTGCG) complexed with the minor groove binding drug netropsin. Biochemistry. 32: 8403-10. PMID 8395202 DOI: 10.1021/Bi00084A004 |
0.622 |
|
| 1993 |
Yang D, Gao Y, Robinson H, van der Marel GA, van Boom JH, Wang AH. Structural effects of the C2-methylhypoxanthine:cytosine base pair in B-DNA: A combined NMR and X-ray diffraction study of d(CGC[m2I]AATTCGCG). Biochemistry. 32: 8672-81. PMID 8357809 |
0.577 |
|
| 1993 |
Jaishree TN, van der Marel GA, van Boom JH, Wang AH. Structural influence of RNA incorporation in DNA: quantitative nuclear magnetic resonance refinement of d(CG)r(CG)d(CG) and d(CG)r(C)d(TAGCG). Biochemistry. 32: 4903-11. PMID 7683912 |
0.589 |
|
| 1992 |
Cognet JA, Gabarro-Arpa J, Le Bret M, van der Marel GA, van Boom JH, Fazakerley GV. Solution conformation of an oligonucleotide containing a G.G mismatch determined by nuclear magnetic resonance and molecular mechanics. Nucleic Acids Research. 19: 6771-9. PMID 1837078 DOI: 10.1093/NAR/19.24.6771 |
0.557 |
|
| 1992 |
Vink C, Yeheskiely E, van der Marel GA, van Boom JH, Plasterk RH. Site-specific hydrolysis and alcoholysis of human immunodeficiency virus DNA termini mediated by the viral integrase protein. Nucleic Acids Research. 19: 6691-8. PMID 1662361 DOI: 10.1093/NAR/19.24.6691 |
0.426 |
|
| 1992 |
Kellenbach ER, Remerowski ML, Eib D, Boelens R, van der Marel GA, van den Elst H, van Boom JH, Kaptein R. Synthesis of isotope labeled oligonucleotides and their use in an NMR study of a protein-DNA complex. Nucleic Acids Research. 20: 653-7. PMID 1542561 DOI: 10.1093/Nar/20.4.653 |
0.494 |
|
| 1992 |
Dreef-Tromp CM, van der Maarel JC, van den Elst H, van der Marel GA, van Boom JH. Solid-phase synthesis of the nucleopeptide fragment H-Asp-Ser[pAAAGTAAGCC]-Glu-OH from the nucleoprotein of Bacillus subtilis phage phi 29. Nucleic Acids Research. 20: 4015-20. PMID 1508685 |
0.474 |
|
| 1992 |
Dreef CE, Jansze JP, Elie CJ, van der Marel GA, van Boom JH. Synthesis of racemic 5-phosphonate analogues of myo-inositol 1,4,5-tris- and 1,3,4,5-tetrakis-phosphate. Carbohydrate Research. 234: 37-50. PMID 1468080 |
0.367 |
|
| 1992 |
Zhang H, van der Marel GA, van Boom JH, Wang AH. Conformational perturbation of the anticancer nucleotide arabinosylcytosine on Z-DNA: molecular structure of (araC-dG)3 at 1.3 A resolution. Biopolymers. 32: 1559-69. PMID 1457732 DOI: 10.1002/bip.360321113 |
0.564 |
|
| 1992 |
Robinson H, van der Marel GA, van Boom JH, Wang AH. Unusual DNA conformation at low pH revealed by NMR: parallel-stranded DNA duplex with homo base pairs. Biochemistry. 31: 10510-7. PMID 1420168 |
0.554 |
|
| 1992 |
Schmieder P, Ippel JH, van den Elst H, van der Marel GA, van Boom JH, Altona C, Kessler H. Heteronuclear NMR of DNA with the heteronucleus in natural abundance: facilitated assignment and extraction of coupling constants. Nucleic Acids Research. 20: 4747-51. PMID 1408787 DOI: 10.1093/Nar/20.18.4747 |
0.644 |
|
| 1992 |
Sriram M, van der Marel GA, Roelen HL, van Boom JH, Wang AH. Structural consequences of a carcinogenic alkylation lesion on DNA: effect of O6-ethylguanine on the molecular structure of the d(CGC[e6G]AATTCGCG)-netropsin complex. Biochemistry. 31: 11823-34. PMID 1332773 |
0.57 |
|
| 1992 |
Dreef-Tromp CM, van den Elst H, van den Boogaart JE, van der Marel GA, van Boom JH. Solid-phase synthesis of an RNA nucleopeptide fragment from the nucleoprotein of poliovirus. Nucleic Acids Research. 20: 2435-9. PMID 1317954 |
0.442 |
|
| 1991 |
Ohishi H, Kunisawa S, van der Marel G, van Boom JH, Rich A, Wang AH, Tomita K, Hakoshima T. Interaction between the left-handed Z-DNA and polyamine. The crystal structure of the d(CG)3 and N-(2-aminoethyl)-1,4-diamino-butane complex. Febs Letters. 284: 238-44. PMID 2060642 DOI: 10.1016/0014-5793(91)80694-X |
0.629 |
|
| 1991 |
Gao YG, Liaw YC, Li YK, van der Marel GA, van Boom JH, Wang AH. Facile formation of a crosslinked adduct between DNA and the daunorubicin derivative MAR70 mediated by formaldehyde: molecular structure of the MAR70-d(CGTnACG) covalent adduct. Proceedings of the National Academy of Sciences of the United States of America. 88: 4845-9. PMID 2052564 DOI: 10.1073/PNAS.88.11.4845 |
0.58 |
|
| 1991 |
Xodo LE, Manzini G, Quadrifoglio F, van der Marel G, van Boom J. DNA hairpin loops in solution. Correlation between primary structure, thermostability and reactivity with single-strand-specific nuclease from mung bean. Nucleic Acids Research. 19: 1505-11. PMID 2027758 DOI: 10.1093/NAR/19.7.1505 |
0.553 |
|
| 1991 |
Roelen HC, Bijsterbosch MK, Bakkeren HF, van Berkel TJ, Kempen HJ, Buytenhek M, van der Marel GA, van Boom JH. Water-soluble cholesteryl-containing phosphorothioate monogalactosides: synthesis, properties, and use in lowering blood cholesterol by directing plasma lipoproteins to the liver. Journal of Medicinal Chemistry. 34: 1036-42. PMID 2002447 DOI: 10.1021/jm00107a024 |
0.35 |
|
| 1991 |
Xodo LE, Manzini G, Quadrifoglio F, van der Marel GA, van Boom JH. Effect of 5-methylcytosine on the stability of triple-stranded DNA--a thermodynamic study. Nucleic Acids Research. 19: 5625-31. PMID 1945840 DOI: 10.1093/NAR/19.20.5625 |
0.492 |
|
| 1991 |
Blommers MJ, van de Ven FJ, van der Marel GA, van Boom JH, Hilbers CW. The three-dimensional structure of a DNA hairpin in solution two-dimensional NMR studies and structural analysis of d(ATCCTATTTATAGGAT). European Journal of Biochemistry / Febs. 201: 33-51. PMID 1915376 DOI: 10.1111/J.1432-1033.1991.TB16253.X |
0.7 |
|
| 1991 |
Gao YG, van der Marel GA, van Boom JH, Wang AH. Molecular structure of a DNA decamber containing an anticancer nucleoside arabinosylcytosine: conformational perturbation by arabinosylcytosine in B-DNA. Biochemistry. 30: 9922-31. PMID 1911784 DOI: 10.1021/BI00105A016 |
0.588 |
|
| 1991 |
Verheul AF, Boons GJ, Van der Marel GA, Van Boom JH, Jennings HJ, Snippe H, Verhoef J, Hoogerhout P, Poolman JT. Minimal oligosaccharide structures required for induction of immune responses against meningococcal immunotype L1, L2, and L3,7,9 lipopolysaccharides determined by using synthetic oligosaccharide-protein conjugates. Infection and Immunity. 59: 3566-73. PMID 1910006 |
0.385 |
|
| 1991 |
Roelen HC, Saris CP, Brugghe HF, van den Elst H, Westra JG, van der Marel GA, van Boom JH. Solid-phase synthesis of DNA fragments containing the modified base 7-hydro-8-oxo-2'-deoxyguanosine. Nucleic Acids Research. 19: 4361-9. PMID 1886763 DOI: 10.1093/nar/19.16.4361 |
0.465 |
|
| 1991 |
Koning TM, Boelens R, van der Marel GA, van Boom JH, Kaptein R. Structure determination of a DNA octamer in solution by NMR spectroscopy. Effect of fast local motions. Biochemistry. 30: 3787-97. PMID 1849738 DOI: 10.1021/Bi00229A028 |
0.522 |
|
| 1991 |
Remerowski ML, Kellenbach E, Boelens R, van der Marel GA, van Boom JH, Maler BA, Yamamoto KR, Kaptein R. 1H NMR studies of DNA recognition by the glucocorticoid receptor: complex of the DNA binding domain with a half-site response element. Biochemistry. 30: 11620-4. PMID 1751485 DOI: 10.1021/Bi00114A003 |
0.535 |
|
| 1990 |
Haasnoot CA, Westerink HP, van der Marel GA, van Boom JH. Discrimination between A-type and B-type conformations of double helical nucleic acid fragments in solution by means of two-dimensional nuclear Overhauser experiments. Journal of Biomolecular Structure & Dynamics. 2: 345-60. PMID 6400940 DOI: 10.1080/07391102.1984.10507572 |
0.828 |
|
| 1990 |
Haasnoot CA, Westerink HP, van der Marel GA, van Boom JH. Conformational analysis of a hybrid DNA-RNA double helical oligonucleotide in aqueous solution: d(CG)r(CG)d(CG) studied by 1D- and 2D-1H NMR spectroscopy. Journal of Biomolecular Structure & Dynamics. 1: 131-49. PMID 6086057 DOI: 10.1080/07391102.1983.10507430 |
0.846 |
|
| 1990 |
Manzini G, Xodo LE, Quadrifoglio F, van Boom JH, van der Marel GA. dC-dG alternating oligonucleotides: thermodynamic and kinetic aspects of the B-Z transformation. Journal of Biomolecular Structure & Dynamics. 4: 651-62. PMID 3271458 DOI: 10.1080/07391102.1987.10507666 |
0.475 |
|
| 1990 |
Liaw YC, Gao YG, Robinson H, van der Marel GA, van Boom JH, Wang AH. Antitumor drug nogalamycin binds DNA in both grooves simultaneously: molecular structure of nogalamycin-DNA complex. Biochemistry. 28: 9913-8. PMID 2620066 DOI: 10.1021/BI00452A006 |
0.539 |
|
| 1990 |
Robinson H, Liaw YC, van der Marel GA, van Boom JH, Wang AH. NMR studies on the binding of antitumor drug nogalamycin to DNA hexamer d(CGTACG). Nucleic Acids Research. 18: 4851-8. PMID 2395646 DOI: 10.1093/NAR/18.16.4851 |
0.563 |
|
| 1990 |
van Belkum A, Blommers MJ, van den Elst H, van Boom JH, Hilbers CW. Biochemical and biophysical studies on the folding of the core region of the origin of replication of bacteriophage M13. Nucleic Acids Research. 18: 4703-10. PMID 2395637 DOI: 10.1093/Nar/18.16.4703 |
0.587 |
|
| 1990 |
Manzini G, Xodo LE, Gasparotto D, Quadrifoglio F, van der Marel GA, van Boom JH. Triple helix formation by oligopurine-oligopyrimidine DNA fragments. Electrophoretic and thermodynamic behavior. Journal of Molecular Biology. 213: 833-43. PMID 2359124 DOI: 10.1016/S0022-2836(05)80267-0 |
0.529 |
|
| 1990 |
Frederick CA, Williams LD, Ughetto G, van der Marel GA, van Boom JH, Rich A, Wang AH. Structural comparison of anticancer drug-DNA complexes: adriamycin and daunomycin. Biochemistry. 29: 2538-49. PMID 2334681 DOI: 10.1021/Bi00462A016 |
0.633 |
|
| 1990 |
Aymami J, Coll M, van der Marel GA, van Boom JH, Wang AH, Rich A. Molecular structure of nicked DNA: a substrate for DNA repair enzymes. Proceedings of the National Academy of Sciences of the United States of America. 87: 2526-30. PMID 2320572 DOI: 10.1073/Pnas.87.7.2526 |
0.648 |
|
| 1990 |
Williams LD, Egli M, Qi G, Bash P, van der Marel GA, van Boom JH, Rich A, Frederick CA. Structure of nogalamycin bound to a DNA hexamer. Proceedings of the National Academy of Sciences of the United States of America. 87: 2225-9. PMID 2315315 DOI: 10.1073/Pnas.87.6.2225 |
0.633 |
|
| 1990 |
Lamerichs RM, Boelens R, Van der Marel GA, Van Boom JH, Kaptein R. Assignment of the 1H-NMR spectrum of a lac repressor headpiece-operator complex in H2O and identification of NOEs. Consequences for protein-DNA interaction. European Journal of Biochemistry / Febs. 194: 629-37. PMID 2269288 DOI: 10.1111/J.1432-1033.1990.Tb15662.X |
0.508 |
|
| 1990 |
Blommers MJ, Slot HJ, van der Marel GA, van Boom JH, Hilbers CW. Conformational analysis of the 3'-5'-cyclic dinucleotide d less than pApA greater than by means of molecular mechanics. Journal of Biomolecular Structure & Dynamics. 8: 233-51. PMID 2176505 DOI: 10.1080/07391102.1990.10507804 |
0.681 |
|
| 1990 |
Liaw YC, Gao YG, Robinson H, Sheldrick GM, Sliedregt LA, van der Marel GA, van Boom JH, Wang AH. Cyclic diguanylic acid behaves as a host molecule for planar intercalators. Febs Letters. 264: 223-7. PMID 2162785 DOI: 10.1016/0014-5793(90)80253-F |
0.489 |
|
| 1990 |
Pieters JM, de Vroom E, van der Marel GA, van Boom JH, Koning TM, Kaptein R, Altona C. Hairpin structures in DNA containing arabinofuranosylcytosine. A combination of nuclear magnetic resonance and molecular dynamics. Biochemistry. 29: 788-99. PMID 2159791 DOI: 10.1021/Bi00455A029 |
0.69 |
|
| 1990 |
Egli M, Gessner RV, Williams LD, Quigley GJ, van der Marel GA, van Boom JH, Rich A, Frederick CA. Atomic-resolution structure of the cellulose synthase regulator cyclic diguanylic acid. Proceedings of the National Academy of Sciences of the United States of America. 87: 3235-9. PMID 2158107 DOI: 10.1073/Pnas.87.8.3235 |
0.566 |
|
| 1990 |
Williams LD, Egli M, Ughetto G, van der Marel GA, van Boom JH, Quigley GJ, Wang AH, Rich A, Frederick CA. Structure of 11-deoxydaunomycin bound to DNA containing a phosphorothioate. Journal of Molecular Biology. 215: 313-20. PMID 2152325 DOI: 10.1016/S0022-2836(05)80349-3 |
0.616 |
|
| 1990 |
Dreef-Tromp CM, van Dam EM, van den Elst H, van der Marel GA, van Boom JH. Solid-phase synthesis of H-Phe-Tyr-(pATAT)-NH2: a nucleopeptide fragment from the nucleoprotein of bacteriophage phi X174. Nucleic Acids Research. 18: 6491-5. PMID 2147473 DOI: 10.1093/nar/18.22.6491 |
0.402 |
|
| 1990 |
Noort D, Coughtrie MW, Burchell B, van der Marel GA, van Boom JH, van der Gen A, Mulder GJ. Inhibition of UDP-glucuronosyltransferase activity by possible transition-state analogues in rat-liver microsomes. European Journal of Biochemistry / Febs. 188: 309-12. PMID 2108023 DOI: 10.1111/J.1432-1033.1990.Tb15404.X |
0.36 |
|
| 1990 |
Carter BJ, De Vroom E, Long EC, Van Der Marel GA, Van Boom JH, Hecht SM. Site-specific cleavage of RNA by Fe(II)·bleomycin Proceedings of the National Academy of Sciences of the United States of America. 87: 9373-9377. PMID 1701259 DOI: 10.1073/Pnas.87.23.9373 |
0.415 |
|
| 1989 |
Xodo LE, Manzini G, Quadrifoglio F, van der Marel GA, van Boom JH. The B-Z conformational transition in folded oligodeoxynucleotides: loop size and stability of Z-hairpins. Biochemistry. 27: 6327-31. PMID 3219338 DOI: 10.1021/BI00417A019 |
0.531 |
|
| 1989 |
Xodo LE, Manzini G, Quadrifoglio F, van der Marel GA, van Boom JH. Oligodeoxynucleotide folding in solution: loop size and stability of B-hairpins. Biochemistry. 27: 6321-6. PMID 3219337 DOI: 10.1021/BI00417A018 |
0.548 |
|
| 1989 |
Xodo LE, Manzini G, Quadrifoglio F, Yathindra N, van der Marel GA, van Boom JH. A facile duplex-hairpin interconversion through a cruciform intermediate in a linear DNA fragment. Journal of Molecular Biology. 205: 777-81. PMID 2926824 DOI: 10.1016/0022-2836(89)90322-7 |
0.553 |
|
| 1989 |
Blommers MJ, Walters JA, Haasnoot CA, Aelen JM, van der Marel GA, van Boom JH, Hilbers CW. Effects of base sequence on the loop folding in DNA hairpins. Biochemistry. 28: 7491-8. PMID 2819083 DOI: 10.1021/BI00444A049 |
0.819 |
|
| 1989 |
Wang AH, Cottens S, Dervan PB, Yesinowski JP, van der Marel GA, van Boom JH. Interactions between a symmetrical minor groove binding compound and DNA oligonucleotides: 1H and 19F NMR studies. Journal of Biomolecular Structure & Dynamics. 7: 101-17. PMID 2818866 DOI: 10.1080/07391102.1989.10507754 |
0.485 |
|
| 1989 |
Xodo LE, Manzini G, Quadrifoglio F, Yathindra N, van der Marel GA, van Boom JH. The left-handed Z-DNA conformation in oligodeoxynucleotides containing different amounts of AT base pairs: a far UV circular dichroism study. Journal of Biomolecular Structure & Dynamics. 6: 1217-31. PMID 2818863 DOI: 10.1080/07391102.1989.10506546 |
0.493 |
|
| 1989 |
Hua N, van der Marel GA, van Boom JH, Feigon J. Non-contiguous regions of Z-DNA in a DNA dodecamer. Nucleic Acids Research. 17: 7923-44. PMID 2798135 DOI: 10.1093/Nar/17.19.7923 |
0.55 |
|
| 1989 |
Pieters JM, de Vroom E, van der Marel GA, van Boom JH, Altona C. Conformational consequences of the incorporation of arabinofuranosylcytidine in DNA. An NMR study of the DNA fragments d(CGCTAGCG) and d(CGaCTAGCG) in solution. European Journal of Biochemistry / Febs. 184: 415-25. PMID 2792106 DOI: 10.1111/J.1432-1033.1989.Tb15033.X |
0.706 |
|
| 1989 |
Pieters JM, Mans RM, van den Elst H, van der Marel GA, van Boom JH, Altona C. Conformational and thermodynamic consequences of the introduction of a nick in duplexed DNA fragments: an NMR study augmented by biochemical experiments. Nucleic Acids Research. 17: 4551-65. PMID 2748334 DOI: 10.1093/nar/17.12.4551 |
0.652 |
|
| 1989 |
Lamerichs RM, Boelens R, van der Marel GA, van Boom JH, Kaptein R, Buck F, Fera B, Rüterjans H. H NMR study of a complex between the lac repressor headpiece and a 22 base pair symmetric lac operator. Biochemistry. 28: 2985-91. PMID 2742823 DOI: 10.1021/Bi00433A037 |
0.496 |
|
| 1989 |
Kuyl-Yeheskiely E, Dreef-Tromp CM, Geluk A, van der Marel GA, van Boom JH. Synthesis of the nucleopeptides H-Phe-Tyr(pGC)-NH2 and H-Phe-Ser(pGC)-Ala-OH via a phosphotriester approach. Nucleic Acids Research. 17: 2897-905. PMID 2726447 DOI: 10.1093/nar/17.8.2897 |
0.42 |
|
| 1989 |
Gilbert DE, van der Marel GA, van Boom JH, Feigon J. Unstable Hoogsteen base pairs adjacent to echinomycin binding sites within a DNA duplex. Proceedings of the National Academy of Sciences of the United States of America. 86: 3006-10. PMID 2717609 DOI: 10.1073/Pnas.86.9.3006 |
0.573 |
|
| 1989 |
Frederick CA, Quigley GJ, Teng MK, Coll M, Van der Marel GA, Van Boom JH, Rich A, Wang AH. Molecular structure of an A-DNA decamer d(ACCGGCCGGT). European Journal of Biochemistry / Febs. 181: 295-307. PMID 2714286 DOI: 10.1111/J.1432-1033.1989.Tb14724.X |
0.65 |
|
| 1989 |
Pieters JM, Mellema JR, van den Elst H, van der Marel GA, van Boom JH, Altona C. Thermodynamics of the various forms of the dodecamer d(ATTACCGGTAAT) and of its constituent hexamers from proton nmr chemical shifts and UV melting curves: three-state and four-state thermodynamic models. Biopolymers. 28: 717-40. PMID 2706311 DOI: 10.1002/bip.360280304 |
0.685 |
|
| 1989 |
Benevides JM, Wang AH, van der Marel GA, van Boom JH, Thomas GJ. Effect of the G.T mismatch on backbone and sugar conformations of Z-DNA and B-DNA: analysis by Raman spectroscopy of crystal and solution structures of d(CGCGTG) and d(CGCGCG). Biochemistry. 28: 304-10. PMID 2706254 DOI: 10.1021/BI00427A041 |
0.562 |
|
| 1989 |
Boons GJ, Overhand M, van der Marel GA, van Boom JH. Synthesis of a trisaccharide of the inner core region of Citrobacter PCM 187 lipopolysaccharide that contains L-glycero-alpha-D-manno-heptopyranosyl units. Carbohydrate Research. 192: C1-4. PMID 2611773 DOI: 10.1016/0008-6215(89)85198-5 |
0.553 |
|
| 1989 |
Coll M, Aymami J, van der Marel GA, van Boom JH, Rich A, Wang AH. Molecular structure of the netropsin-d(CGCGATATCGCG) complex: DNA conformation in an alternating AT segment. Biochemistry. 28: 310-20. PMID 2539859 DOI: 10.1021/Bi00427A042 |
0.646 |
|
| 1989 |
Xodo LE, Manzini G, Quadrifoglio F, van der Marel G, van Boom JH. Hairpin structures in synthetic oligodeoxynucleotides: sequence effects on the duplex-to-hairpin transition. Biochimie. 71: 793-803. PMID 2505860 DOI: 10.1016/0300-9084(89)90042-4 |
0.551 |
|
| 1989 |
Tomita K, Hakoshima T, Inubushi K, Kunisawa S, Ohishi H, van der Marel GA, van Boom JH, Wang AH, Rich A. Polyamine interaction with Z-DNA. Journal of Molecular Graphics. 7: 71-5. PMID 2488266 DOI: 10.1016/S0263-7855(89)80002-5 |
0.597 |
|
| 1989 |
Carrondo MA, Coll M, Aymami J, Wang AH, van der Marel GA, van Boom JH, Rich A. Binding of a Hoechst dye to d(CGCGATATCGCG) and its influence on the conformation of the DNA fragment. Biochemistry. 28: 7849-59. PMID 2482071 DOI: 10.1021/Bi00445A047 |
0.645 |
|
| 1989 |
Teng MK, Liaw YC, van der Marel GA, van Boom JH, Wang AH. Effects of the O2' hydroxyl group on Z-DNA conformation: structure of Z-RNA and (araC)-[Z-DNA]. Biochemistry. 28: 4923-8. PMID 2475172 DOI: 10.1021/BI00438A001 |
0.575 |
|
| 1988 |
Roelen HC, de Vroom E, van der Marel GA, van Boom JH. Synthesis of nucleic acid methylphosphonothioates. Nucleic Acids Research. 16: 7633-45. PMID 3412896 DOI: 10.1093/nar/16.15.7633 |
0.45 |
|
| 1988 |
van den Hoogen YT, van Beuzekom AA, de Vroom E, van der Marel GA, van Boom JH, Altona C. Bulge-out structures in the single-stranded trimer AUA and in the duplex (CUGGUGCGG).(CCGCCCAG). A model-building and NMR study. Nucleic Acids Research. 16: 5013-30. PMID 3387215 DOI: 10.1093/nar/16.11.5013 |
0.668 |
|
| 1988 |
de Vroom E, Broxterman HJ, Sliedregt LA, van der Marel GA, van Boom JH. Synthesis of cyclic oligonucleotides by a modified phosphotriester approach. Nucleic Acids Research. 16: 4607-20. PMID 3380690 DOI: 10.1093/nar/16.10.4607 |
0.445 |
|
| 1988 |
van den Hoogen YT, van Beuzekom AA, van den Elst H, van der Marel GA, van Boom JH, Altona C. Extra thymidine stacks into the d(CTGGTGCGG).d(CCGCCCAG) duplex. An NMR and model-building study. Nucleic Acids Research. 16: 2971-86. PMID 3368313 DOI: 10.1093/nar/16.7.2971 |
0.698 |
|
| 1988 |
Benevides JM, Wang AH, van der Marel GA, van Boom JH, Thomas GJ. Crystal and solution structures of the B-DNA dodecamer d(CGCAAATTTGCG) probed by Raman spectroscopy: heterogeneity in the crystal structure does not persist in the solution structure. Biochemistry. 27: 931-8. PMID 3365372 DOI: 10.1021/BI00403A014 |
0.533 |
|
| 1988 |
Kemmink J, Eker APM, van der Marel GA, van Boom JH, Kaptein R. Photoreactivation of the thymine dimer containing DNA octamer d(GCGT TGCG)·d(CGCAACGC) by the photoreactivating enzyme from Anacystis nidulans Journal of Photochemistry and Photobiology, B: Biology. 1: 323-328. PMID 3149667 DOI: 10.1016/1011-1344(88)85020-6 |
0.532 |
|
| 1988 |
van den Hoogen YT, Treurniet SJ, Roelen HC, de Vroom E, van der Marel GA, van Boom JH, Altona C. Conformational analysis of the tetranucleotides m6(2)A-m6(2)A-U-m6(2)A(m6(2)A = N6-dimethyladenosine) and U-m6(2)A-U-m6(2)A and of the hybrid dA-r(U-A). A one- and two-dimensional NMR study. European Journal of Biochemistry / Febs. 171: 155-62. PMID 3123229 DOI: 10.1111/J.1432-1033.1988.TB13771.X |
0.595 |
|
| 1988 |
van den Hoogen YT, Lankhorst PP, Gijsman P, Hartel AJ, van Boom JH, Altona C. Conformational analysis of the dinucleotides 5'-methylphospho-N6-dimethyladenylyl-uridine (mpm62A-U) and 5'methylphospho-uridylyl-N6-dimethyladenosine (mpU-m62A) and of the trinucleotide U-m62A-U. A nuclear magnetic resonance and circular dichroic study. European Journal of Biochemistry / Febs. 171: 143-53. PMID 3123228 DOI: 10.1111/J.1432-1033.1988.Tb13770.X |
0.535 |
|
| 1988 |
Blommers MJ, Haasnoot CA, Walters JA, van der Marel GA, van Boom JH, Hilbers CW. Solution structure of the 3'-5' cyclic dinucleotide d(pApA). A combined NMR, UV melting, and molecular mechanics study. Biochemistry. 27: 8361-9. PMID 2853963 DOI: 10.1021/BI00422A011 |
0.827 |
|
| 1988 |
Frederick CA, Coll M, van der Marel GA, van Boom JH, Wang AH. Molecular structure of cyclic deoxydiadenylic acid at atomic resolution. Biochemistry. 27: 8350-61. PMID 2853962 DOI: 10.1021/BI00422A010 |
0.527 |
|
| 1988 |
Frederick CA, Quigley GJ, van der Marel GA, van Boom JH, Wang AH, Rich A. Methylation of the EcoRI recognition site does not alter DNA conformation: the crystal structure of d(CGCGAm6ATTCGCG) at 2.0-A resolution. The Journal of Biological Chemistry. 263: 17872-9. PMID 2846582 DOI: 10.2210/Pdb4Dnb/Pdb |
0.624 |
|
| 1988 |
Baumann U, Lehmann U, Schwellnus K, van Boom JH, Kuhn H. Complexes of DNA hairpins and a single-stranded oligonucleotide detected by affinity chromatography and mung bean nuclease cleavage. European Journal of Biochemistry. 170: 267-72. PMID 2826156 DOI: 10.1111/J.1432-1033.1987.TB13695.X |
0.304 |
|
| 1988 |
de Vroom E, Roelen HC, Saris CP, Budding TN, van der Marel GA, van Boom JH. Preparation of covalently linked DNA-RNA hybrids and arabinocytidine containing DNA fragments. Nucleic Acids Research. 16: 2987-3003. PMID 2453027 DOI: 10.1093/nar/16.7.2987 |
0.494 |
|
| 1988 |
van den Hoogen YT, Erkelens C, de Vroom E, van der Marel GA, van Boom JH, Altona C. Influence of uracil on the conformational behaviour of RNA oligonucleotides in solution. European Journal of Biochemistry / Febs. 173: 295-303. PMID 2452087 DOI: 10.1111/J.1432-1033.1988.Tb13998.X |
0.713 |
|
| 1988 |
Sugiyama H, Xu C, Murugesan N, Hecht SM, van der Marel GA, van Boom JH. Chemistry of the alkali-labile lesion formed from iron(II) bleomycin and d(CGCTTTAAAGCG). Biochemistry. 27: 58-67. PMID 2450572 DOI: 10.1021/Bi00401A011 |
0.467 |
|
| 1987 |
de Vroom E, Fidder A, Saris CP, van der Marel GA, van Boom JH. Preparation of the individual diastereomers of adenylyl-(2'-5')-P-thioadenylyl-(2'-5')-adenosine and their 5'-phosphorylated derivatives. Nucleic Acids Research. 15: 9933-43. PMID 3697086 DOI: 10.1093/nar/15.23.9933 |
0.36 |
|
| 1987 |
Orbons LP, van der Marel GA, van Boom JH, Altona C. An NMR study of polymorphous behaviour of the mismatched DNA octamer d(m5C-G-m5C-G-A-G-m5C-G) in solution. The B-duplex and hairpin forms. European Journal of Biochemistry / Febs. 170: 225-39. PMID 3691520 DOI: 10.1111/J.1432-1033.1987.Tb13690.X |
0.7 |
|
| 1987 |
Frederick CA, Saal D, van der Marel GA, van Boom JH, Wang AH, Rich A. The crystal structure of d(GGm5CCGGCC): the effect of methylation on A-DNA structure and stability. Biopolymers. 26: S145-60. PMID 3580495 DOI: 10.1002/bip.360260014 |
0.641 |
|
| 1987 |
Orbons LP, van der Marel GA, van Boom JH, Altona C. An NMR study of the polymorphous behavior of the mismatched DNA octamer d(m5C-G-m5C-G-T-G-m5C-G) in solution. The B, Z, and hairpin forms. Journal of Biomolecular Structure & Dynamics. 4: 939-63. PMID 3270540 DOI: 10.1080/07391102.1987.10507691 |
0.698 |
|
| 1987 |
Kuyl-Yeheskiely E, Tromp CM, Schaeffer AH, van der Marel GA, van Boom JH. A model study directed towards the preparation of nucleopeptides via H-phosphonate intermediates. Nucleic Acids Research. 15: 1807-18. PMID 3103103 DOI: 10.1093/NAR/15.4.1807 |
0.445 |
|
| 1987 |
Rinkel LJ, van der Marel GA, van Boom JH, Altona C. Influence of the base sequence on the conformational behaviour of DNA polynucleotides in solution. European Journal of Biochemistry / Febs. 166: 87-101. PMID 3036527 DOI: 10.1111/J.1432-1033.1987.Tb13487.X |
0.712 |
|
| 1987 |
Kemmink J, Boelens R, Koning T, van der Marel GA, van Boom JH, Kaptein R. 1H NMR study of the exchangeable protons of the duplex d(GCGTTGCG).d(CGCAACGC) containing a thymine photodimer. Nucleic Acids Research. 15: 4645-53. PMID 3035498 DOI: 10.1093/Nar/15.11.4645 |
0.548 |
|
| 1987 |
Quignard E, Fazakerley GV, van der Marel G, van Boom JH, Guschlbauer W. Comparison of the conformation of an oligonucleotide containing a central G-T base pair with the non-mismatch sequence by proton NMR. Nucleic Acids Research. 15: 3397-409. PMID 3033602 DOI: 10.1093/NAR/15.8.3397 |
0.522 |
|
| 1987 |
Rinkel LJ, van der Marel GA, van Boom JH, Altona C. Influence of N6-methylation of residue A(5) on the conformational behaviour of d(C-C-G-A-A-T-T-C-G-G) in solution studied by 1H-NMR spectroscopy. 2. The hairpin form. European Journal of Biochemistry / Febs. 163: 287-96. PMID 3028801 |
0.677 |
|
| 1987 |
Rinkel LJ, van der Marel GA, van Boom JH, Altona C. Influence of N6-methylation of residue A(5) on the conformational behaviour of d(C-C-G-A-A-T-T-C-G-G) in solution studied by 1H-NMR spectroscopy. 1. The duplex form. European Journal of Biochemistry / Febs. 163: 275-86. PMID 3028800 DOI: 10.1111/J.1432-1033.1987.Tb10798.X |
0.714 |
|
| 1987 |
Kemmink J, Boelens R, Koning TM, Kaptein R, van der Marel GA, van Boom JH. Conformational changes in the oligonucleotide duplex d(GCGTTGCG) x d(CGCAACGC) induced by formation of a cis-syn thymine dimer. A two-dimensional NMR study. European Journal of Biochemistry / Febs. 162: 37-43. PMID 3028790 DOI: 10.1111/J.1432-1033.1987.Tb10538.X |
0.591 |
|
| 1987 |
Raap J, Dreef CE, van der Marel GA, van Boom JH, Hilbers CW. Synthesis and proton-NMR studies of oligonucleotides containing an apurinic (AP) site. Journal of Biomolecular Structure & Dynamics. 5: 219-47. PMID 2856028 DOI: 10.1080/07391102.1987.10506391 |
0.837 |
|
| 1987 |
Ehrenfeld GM, Shipley JB, Heimbrook DC, Sugiyama H, Long EC, Van Boom JH, Van Der Marel GA, Oppenheimer NJ, Hecht SM. Copper-dependent cleavage of DNA by bleomycin Biochemistry. 26: 931-942. PMID 2436656 DOI: 10.1021/Bi00377A038 |
0.395 |
|
| 1986 |
Benevides JM, Wang AH, Rich A, Kyogoku Y, van der Marel GA, van Boom JH, Thomas GJ. Raman spectra of single crystals of r(GCG)d(CGC) and d(CCCCGGGG) as models for A DNA, their structure transitions in aqueous solution, and comparison with double-helical poly(dG).poly(dC). Biochemistry. 25: 41-50. PMID 3954991 DOI: 10.1021/Bi00349A007 |
0.666 |
|
| 1986 |
Orbons LP, van der Marel GA, van Boom JH, Altona C. Hairpin and duplex formation of the DNA octamer d(m5C-G-m5C-G-T-G-m5C-G) in solution. An NMR study. Nucleic Acids Research. 14: 4187-96. PMID 3714474 DOI: 10.1093/nar/14.10.4187 |
0.683 |
|
| 1986 |
Quigley GJ, Ughetto G, van der Marel GA, van Boom JH, Wang AH, Rich A. Non-Watson-Crick G.C and A.T base pairs in a DNA-antibiotic complex. Science (New York, N.Y.). 232: 1255-8. PMID 3704650 DOI: 10.1126/Science.3704650 |
0.65 |
|
| 1986 |
Marugg JE, de Vroom E, Dreef CE, Tromp M, van der Marel GA, van Boom JH. Synthesis of nucleic acid methylphosphonates via the 1-hydroxybenzotriazole phosphotriester approach. Nucleic Acids Research. 14: 2171-85. PMID 3457366 DOI: 10.1093/NAR/14.5.2171 |
0.449 |
|
| 1986 |
Coll M, Wang AH, van der Marel GA, van Boom JH, Rich A. Crystal structure of a Z-DNA fragment containing thymine/2-aminoadenine base pairs. Journal of Biomolecular Structure & Dynamics. 4: 157-72. PMID 3271437 DOI: 10.1080/07391102.1986.10506337 |
0.663 |
|
| 1986 |
Orbons LP, van der Marel GA, van Boom JH, Altona C. The B and Z forms of the d(m5C-G)3 and d(br5C-G)3 hexamers in solution. A 300-MHz and 500-MHz two-dimensional NMR study. European Journal of Biochemistry / Febs. 160: 131-9. PMID 3021446 DOI: 10.1111/J.1432-1033.1986.Tb09949.X |
0.665 |
|
| 1986 |
Rinkel LJ, Sanderson MR, van der Marel GA, van Boom JH, Altona C. Conformational analysis of the octamer d(G-G-C-C-G-G-C-C) in aqueous solution. A one-dimensional and two-dimensional proton NMR study at 300 MHz and 500 MHz. European Journal of Biochemistry / Febs. 159: 85-93. PMID 3017719 DOI: 10.1111/J.1432-1033.1986.Tb09836.X |
0.683 |
|
| 1986 |
Rinkel LJ, Mellema JR, van der Marel GA, van Boom JH, Altona C. Influence of 2-aminoadenosine, A', on the conformational behaviour of d(T-A'-T-A'). A one-dimensional proton NMR study at 300 MHz and 500 MHz. European Journal of Biochemistry / Febs. 154: 259-65. PMID 3002796 DOI: 10.1111/J.1432-1033.1986.Tb09391.X |
0.699 |
|
| 1986 |
Haasnoot CA, Hilbers CW, van der Marel GA, van Boom JH, Singh UC, Pattabiraman N, Kollman PA. On loop folding in nucleic acid hairpin-type structures. Journal of Biomolecular Structure & Dynamics. 3: 843-57. PMID 2482747 DOI: 10.1080/07391102.1986.10508468 |
0.822 |
|
| 1986 |
de Vroom E, Fidder A, Marugg JE, van der Marel GA, van Boom JH. Use of a 1-hydroxybenzotriazole activated phosphorylating reagent towards the synthesis of short RNA fragments in solution. Nucleic Acids Research. 14: 5885-900. PMID 2426660 DOI: 10.1093/NAR/14.14.5885 |
0.427 |
|
| 1985 |
Fazakerley GV, van der Marel GA, van Boom JH, Guschlbauer W. Helix opening in deoxyribonucleic acid from a proton nuclear magnetic resonance study of imino and amino protons in d(CG)3. Nucleic Acids Research. 12: 8269-79. PMID 6504700 DOI: 10.1093/NAR/12.21.8269 |
0.497 |
|
| 1985 |
Ho PS, Frederick CA, Quigley GJ, van der Marel GA, van Boom JH, Wang AH, Rich A. G.T wobble base-pairing in Z-DNA at 1.0 A atomic resolution: the crystal structure of d(CGCGTG). The Embo Journal. 4: 3617-23. PMID 4092690 DOI: 10.1002/J.1460-2075.1985.Tb04125.X |
0.535 |
|
| 1985 |
Hilbers CW, Haasnoot CAG, de Bruin SH, Joordens JJM, Van Der Marel GA, Van Boom JH. Hairpin formation in synthetic oligonucleotides Biochimie. 67: 685-695. PMID 4084598 DOI: 10.1016/S0300-9084(85)80156-5 |
0.705 |
|
| 1985 |
Feigon J, Wang AH, van der Marel GA, van Boom JH, Rich A. Z-DNA forms without an alternating purine-pyrimidine sequence in solution. Science (New York, N.Y.). 230: 82-4. PMID 4035359 DOI: 10.1126/Science.4035359 |
0.564 |
|
| 1985 |
Schattenkerk C, Wreesmann CT, van der Marel GA, van Boom JH. Synthesis of riboguanosine pentaphosphate ppprGpp (Magic Spot II) via a phosphotriester approach. Nucleic Acids Research. 13: 3635-49. PMID 4011437 DOI: 10.1093/NAR/13.10.3635 |
0.357 |
|
| 1985 |
Ughetto G, Wang AH, Quigley GJ, van der Marel GA, van Boom JH, Rich A. A comparison of the structure of echinomycin and triostin A complexed to a DNA fragment. Nucleic Acids Research. 13: 2305-23. PMID 4000957 DOI: 10.1093/Nar/13.7.2305 |
0.626 |
|
| 1985 |
Lankhorst PP, Haasnoot CA, Erkelens C, Westerink HP, van der Marel GA, van Boom JH, Altona C. Carbon-13 NMR in conformational analysis of nucleic acid fragments. 4. The torsion angle distribution about the C3'-O3' bond in DNA constituents. Nucleic Acids Research. 13: 927-42. PMID 4000932 DOI: 10.1093/nar/13.3.927 |
0.822 |
|
| 1985 |
Fujii S, Wang AH, Quigley GJ, Westerink H, Van der Marel G, Van Boom JH, Rich A. The octamers d(CGCGCGCG) and d(CGCATGCG) both crystallize as Z-DNA in the same hexagonal lattice. Biopolymers. 24: 243-50. PMID 3986289 DOI: 10.1002/bip.360240118 |
0.617 |
|
| 1985 |
Gessner RV, Quigley GJ, Wang AH, van der Marel GA, van Boom JH, Rich A. Structural basis for stabilization of Z-DNA by cobalt hexaammine and magnesium cations. Biochemistry. 24: 237-40. PMID 3978072 DOI: 10.1021/Bi00323A001 |
0.608 |
|
| 1985 |
den Hartog JH, Altona C, van Boom JH, van der Marel GA, Haasnoot CA, Reedijk J. cis-diamminedichloroplatinum(II) induced distortion of a single and double stranded deoxydecanucleosidenonaphosphate studied by nuclear magnetic resonance. Journal of Biomolecular Structure & Dynamics. 2: 1137-55. PMID 3916945 DOI: 10.1080/07391102.1985.10507629 |
0.823 |
|
| 1985 |
Wang AH, Gessner RV, van der Marel GA, van Boom JH, Rich A. Crystal structure of Z-DNA without an alternating purine-pyrimidine sequence. Proceedings of the National Academy of Sciences of the United States of America. 82: 3611-5. PMID 3858839 DOI: 10.1073/Pnas.82.11.3611 |
0.65 |
|
| 1985 |
Lankhorst PP, van der Marel GA, Wille G, van Boom JH, Altona C. Conformational characteristics of the hexanucleoside pentaphosphate AUAUAU: a 2D NMR study at 500 MHz. Nucleic Acids Research. 13: 3317-33. PMID 2987882 DOI: 10.1093/nar/13.9.3317 |
0.685 |
|
| 1984 |
Mellema JR, van der Woerd R, van der Marel GA, van Boom JH, Altona C. Proton NMR study and conformational analysis of d(CGT), d(TCG) and d(CGTCG) in aqueous solution. The effect of a dangling thymidine and of a thymidine mismatch on DNA mini-duplexes. Nucleic Acids Research. 12: 5061-78. PMID 6739297 DOI: 10.1093/nar/12.12.5061 |
0.718 |
|
| 1984 |
Westerink HP, van der Marel GA, van Boom JH, Haasnoot CA. Conformational analysis of r(CGCGCG) in aqueous solution: an A-type double helical conformation studied by two-dimensional nuclear Overhauser effect spectroscopy. Nucleic Acids Research. 12: 4323-38. PMID 6728679 DOI: 10.1093/NAR/12.10.4323 |
0.824 |
|
| 1984 |
Wang AH, Hakoshima T, van der Marel G, van Boom JH, Rich A. AT base pairs are less stable than GC base pairs in Z-DNA: the crystal structure of d(m5CGTAm5CG). Cell. 37: 321-31. PMID 6722876 DOI: 10.1016/0092-8674(84)90328-3 |
0.52 |
|
| 1984 |
Tibanyenda N, De Bruin SH, Haasnoot CA, van der Marel GA, van Boom JH, Hilbers CW. The effect of single base-pair mismatches on the duplex stability of d(T-A-T-T-A-A-T-A-T-C-A-A-G-T-T-G) . d(C-A-A-C-T-T-G-A-T-A-T-T-A-A-T-A) European Journal of Biochemistry. 139: 19-27. PMID 6698006 DOI: 10.1111/J.1432-1033.1984.TB07970.X |
0.794 |
|
| 1984 |
Feigon J, Wang AH, van der Marel GA, Van Boom JH, Rich A. A one- and two-dimensional NMR study of the B to Z transition of (m5dC-dG)3 in methanolic solution. Nucleic Acids Research. 12: 1243-63. PMID 6694910 DOI: 10.1093/Nar/12.2.1243 |
0.661 |
|
| 1984 |
Uesugi S, Ohkubo M, Ohtsuka E, Ikehara M, Kobayashi Y, Kyogoku Y, Westerink HP, van der Marel GA, van Boom JH, Haasnoot CA. Conformation of ribooligonucleotide duplexes containing an alternating C-G sequence which show an unusual circular dichroism spectrum. The Journal of Biological Chemistry. 259: 1390-3. PMID 6693410 |
0.801 |
|
| 1984 |
Schattenkerk C, Visser GM, van der Marel GA, van Boom JH. Synthesis of ppTppp via phosphotriester intermediates. Nucleic Acids Research. 11: 7545-54. PMID 6647028 DOI: 10.1093/NAR/11.21.7545 |
0.377 |
|
| 1984 |
Mellema JR, Pieters JM, van der Marel GA, van Boom JH, Haasnoot CA, Altona C. Sequence-dependent structural variation in single-helical DNA. Proton NMR studies of d(T-A-T-A) and d(A-T-A-T) in aqueous solution. European Journal of Biochemistry / Febs. 143: 285-301. PMID 6547907 DOI: 10.1111/J.1432-1033.1984.Tb08371.X |
0.825 |
|
| 1984 |
den Hartog JH, Altona C, van Boom JH, Reedijk J. A phosphorus NMR study of the reaction products of cis-diamminedichloroplatinum (II) with a double-helical oligonucleotide and with DNA. Febs Letters. 176: 393-7. PMID 6541594 DOI: 10.1016/0014-5793(84)81204-1 |
0.61 |
|
| 1984 |
Wang AH, Ughetto G, Quigley GJ, Hakoshima T, van der Marel GA, van Boom JH, Rich A. The molecular structure of a DNA-triostin A complex. Science (New York, N.Y.). 225: 1115-21. PMID 6474168 DOI: 10.1126/Science.6474168 |
0.662 |
|
| 1984 |
Benevides JM, Wang AH, van der Marel GA, van Boom JH, Rich A, Thomas GJ. The Raman spectra of left-handed DNA oligomers incorporating adenine-thymine base pairs+. Nucleic Acids Research. 12: 5913-25. PMID 6462921 DOI: 10.1093/Nar/12.14.5913 |
0.63 |
|
| 1984 |
Mellema JR, Jellema AK, Haasnoot CA, Van Boom JH, Altona C. Conformational analysis of the single-helical DNA fragment d(T-A-A-T) in aqueous solution. The combined use of NMR proton chemical shifts and coupling constants obtained at 300 MHz and 500 MHz. European Journal of Biochemistry / Febs. 141: 165-75. PMID 6327305 DOI: 10.1111/J.1432-1033.1984.Tb08171.X |
0.833 |
|
| 1984 |
Wreesmann CT, Fidder A, van der Marel GA, van Boom JH. Synthesis of short RNA fragments by the benzotriazolyl phosphotriester approach. Nucleic Acids Research. 11: 8389-405. PMID 6200828 DOI: 10.1093/NAR/11.23.8389 |
0.416 |
|
| 1984 |
Clore GM, Gronenborn AM, Piper EA, McLaughlin LW, Graeser E, van Boom JH. The solution structure of a RNA pentadecamer comprising the anticodon loop and stem of yeast tRNAPhe. A 500 MHz 1H-n.m.r. study. The Biochemical Journal. 221: 737-51. PMID 6089745 DOI: 10.1042/Bj2210737 |
0.325 |
|
| 1983 |
Fujii S, Wang AH, van der Marel G, van Boom JH, Rich A. Molecular structure of (m5 dC-dG)3: the role of the methyl group on 5-methyl cytosine in stabilizing Z-DNA. Nucleic Acids Research. 10: 7879-92. PMID 7155900 DOI: 10.1093/NAR/10.23.7879 |
0.627 |
|
| 1983 |
Lankhorst PP, Wille G, van Boom JH, Altona C, Haasnoot CA. Conformational analysis of a ribopentanucleoside tetraphosphate in aqueous solution. A two-dimensional NMR study at 500 MHz. Nucleic Acids Research. 11: 2839-56. PMID 6856477 DOI: 10.1093/nar/11.9.2839 |
0.794 |
|
| 1983 |
Sanderson MR, Mellema JR, van der Marel GA, Wille G, van Boom JH, Altona C. Assignment of non-exchangeable base proton and H1' resonances of a deoxyoctanucleoside heptaphosphate d(G-G-C*-C*-G-G-C-C) by using the nuclear Overhauser effect. Nucleic Acids Research. 11: 3333-46. PMID 6856458 DOI: 10.1093/nar/11.10.3333 |
0.667 |
|
| 1983 |
den Hartog JH, Altona C, van Boom JH, Marcelis AT, van der Marel GA, Rinkel LJ, Wille-Hazeleger G, Reedijk J. cis-Platinum induced distortions in DNA. Conformational analysis of d(GpCpG) and cis-pt(NH3)2[d(GpCpG)], studied by 500-MHz NMR. European Journal of Biochemistry / Febs. 134: 485-95. PMID 6684039 DOI: 10.1111/J.1432-1033.1983.Tb07593.X |
0.672 |
|
| 1983 |
Hakoshima T, Wang AH, van Boom JH, Rich A. Molecular structure of d(m5CGTAm5CG): TA pairs in Z-DNA and the consequences. Nucleic Acids Symposium Series. 213-6. PMID 6664864 |
0.55 |
|
| 1983 |
Alma NCM, Harmsen BJM, Van Boom JH, Van Der Marel G, Hilbers CW. A 500-MHz proton nuclear magnetic resonance study of the structure and structural alterations of gene-5 protein-oligo(deoxyadenylic acid) complexes Biochemistry. 22: 2104-2115. PMID 6602628 DOI: 10.1021/BI00278A010 |
0.653 |
|
| 1983 |
van Boom JH, van der Marel GA, Westerink H, van Boeckel CA, Mellema JR, Altona C, Hilbers CW, Haasnoot CA, de Bruin SH, Berendsen RG. Synthesis and conformational analysis of synthetic DNA fragments. Cold Spring Harbor Symposia On Quantitative Biology. 47: 403-9. PMID 6574853 |
0.807 |
|
| 1983 |
Wang AH, Fujii S, van Boom JH, Rich A. Right-handed and left-handed double-helical DNA: structural studies. Cold Spring Harbor Symposia On Quantitative Biology. 33-44. PMID 6574849 DOI: 10.1101/SQB.1983.047.01.006 |
0.437 |
|
| 1983 |
Haasnoot CA, de Bruin SH, Berendsen RG, Janssen HG, Binnendijk TJ, Hilbers CW, van der Marel GA, van Boom JH. Structure, kinetics and thermodynamics of DNA hairpin fragments in solution. Journal of Biomolecular Structure & Dynamics. 1: 115-29. PMID 6401107 DOI: 10.1080/07391102.1983.10507429 |
0.824 |
|
| 1983 |
Mellema JR, Haasnoot CA, van der Marel GA, Wille G, van Boeckel CA, van Boom JH, Altona C. Proton NMR studies on the covalently linked RNA-DNA hybrid r(GCG)d(TATACGC). Assignment of proton resonances by application of the nuclear Overhauser effect. Nucleic Acids Research. 11: 5717-38. PMID 6193486 DOI: 10.1093/nar/11.16.5717 |
0.834 |
|
| 1983 |
Doornbos J, Wreesmann CT, Van Boom JH, Altona C. Conformational analysis of the single-stranded ribonucleic acid A-A-C-C. A one-dimensional and two-dimensional proton NMR study at 500 MHz. European Journal of Biochemistry / Febs. 131: 571-9. PMID 6188609 DOI: 10.1111/J.1432-1033.1983.Tb07301.X |
0.585 |
|
| 1983 |
Marugg J, McLaughlin L, Piel N, Tromp M, van der Marel G, van Boom J. Polymer supported dna synthesis using hydroxybenzotriazole activated phosphotriester intermediates Tetrahedron Letters. 24: 3989-3992. DOI: 10.1016/S0040-4039(00)88244-1 |
0.421 |
|
| 1982 |
van der Marel GA, van Boeckel CA, Wille G, van Boom JH. A general method for the synthesis of 5'-monophosphates of DNA fragments via phosphotriester intermediates. Nucleic Acids Research. 10: 2337-51. PMID 7088712 DOI: 10.1093/NAR/10.7.2337 |
0.452 |
|
| 1982 |
Alma NC, Harmsen BJ, van Boom JH, van der Marel G, Hilbers CW. 1H NMR studies of the binding of bacteriophage-M13-encoded gene-5 protein to oligo(deoxyadenylic acid)s of varying length. European Journal of Biochemistry. 122: 319-26. PMID 6977447 DOI: 10.1111/J.1432-1033.1982.TB05883.X |
0.63 |
|
| 1982 |
Wang AH, Fujii S, van Boom JH, Rich A. Molecular structure of the octamer d(G-G-C-C-G-G-C-C): modified A-DNA Proceedings of the National Academy of Sciences of the United States of America. 79: 3968-3972. PMID 6955784 DOI: 10.1073/PNAS.79.13.3968 |
0.569 |
|
| 1982 |
Wang AH, Fujii S, van Boom JH, van der Marel GA, van Boeckel SA, Rich A. Molecular structure of r(GCG)d(TATACGC): a DNA--RNA hybrid helix joined to double helical DNA. Nature. 299: 601-4. PMID 6181416 DOI: 10.1038/299601a0 |
0.819 |
|
| 1981 |
Wang AJ, Quigley GJ, Kolpak FJ, van der Marel G, van Boom JH, Rich A. Left-handed double helical DNA: variations in the backbone conformation. Science (New York, N.Y.). 211: 171-6. PMID 7444458 DOI: 10.1126/SCIENCE.7444458 |
0.629 |
|
| 1981 |
Zuiderweg ER, Scheek RM, Veeneman G, van Boom JH, Kaptein R, Rüterjans H, Beyreuther K. 1H NMR studies of lac-operator DNA fragments. Nucleic Acids Research. 9: 6553-69. PMID 7322923 DOI: 10.1093/Nar/9.23.6553 |
0.303 |
|
| 1981 |
Mellema JR, Haasnoot CA, Van Boom JH, Altona C. Complete assignment and conformational analysis of a deoxyribotetranucleotide. d(TAAT). A 360 and 500 Mhz NMR study. Biochimica Et Biophysica Acta. 655: 256-64. PMID 7284386 DOI: 10.1016/0005-2787(81)90016-2 |
0.814 |
|
| 1981 |
Doornbos J, den Hartog JA, van Boom JH, Altona C. Conformational analysis of the nucleotides A2'-5'A, A2'-5'A2'-5'A and A2'-5'U from nuclear magnetic resonance and circular dichroism studies. European Journal of Biochemistry / Febs. 116: 403-12. PMID 7250133 DOI: 10.1111/J.1432-1033.1981.Tb05349.X |
0.487 |
|
| 1981 |
Olsthoorn CS, Bostelaar LJ, De Rooij JF, Van Boom JH, Altona C. Circular dichroism study of stacking properties of oligodeoxyadenylates and polydeoxyadenylate. A three-state conformational model. European Journal of Biochemistry / Febs. 115: 309-21. PMID 7238508 DOI: 10.1111/j.1432-1033.1981.tb05240.x |
0.584 |
|
| 1981 |
Alma NCM, Harmsen BJM, Hull WE, Van Der Marel G, Van Boom JH, Hilbers CW. Double-resonance experiments at 500 MHz on gene-5 protein and its complex with octadeoxyriboadenylic acid Biochemistry. 20: 4419-4428. PMID 6974567 DOI: 10.1021/BI00518A029 |
0.67 |
|
| 1981 |
Quigley GJ, Wang AH, Ughetto G, van der Marel G, van Boom JH, Rich A. Molecular structure of an anticancer drug-DNA complex: daunomycin plus d(CpGpTpApCpG). Proceedings of the National Academy of Sciences of the United States of America. 77: 7204-8. PMID 6938965 DOI: 10.1073/PNAS.77.12.7204 |
0.654 |
|
| 1981 |
Alma NCM, Harmsen BJM, Hilbers CW, Van der Marel G, Van Boom JH. 500 MHz 1H NMR study of the role of lysines and arginines in the binding of gene-5 protein to oligoadenylic acids Febs Letters. 135: 15-20. PMID 6797840 DOI: 10.1016/0014-5793(81)80934-9 |
0.588 |
|
| 1981 |
Hartel AJ, Wille-Hazeleger G, van Boom JH, Altona C. Conformational analysis of a modified ribotetranucleoside triphosphate: m6(2)A-U-m6(2)A-U studied in aqueous solution by nuclear magnetic resonance at 500 MHz. Nucleic Acids Research. 9: 1405-23. PMID 6785726 DOI: 10.1093/nar/9.6.1405 |
0.548 |
|
| 1981 |
Baas PD, Teertstra WR, van Mansfeld AD, Jansz HS, van der Marel GA, Veeneman GH, van Boom JH. Construction of viable and lethal mutations in the origin of bacteriophage 'phi' X174 using synthetic oligodeoxyribonucleotides. Journal of Molecular Biology. 152: 615-39. PMID 6460870 DOI: 10.1016/0022-2836(81)90120-0 |
0.499 |
|
| 1980 |
Haasnoot CA, den Hartog JH, de Rooij JF, van Boom JH, Altona C. Loopstructures in synthetic oligodeoxynucleotides. Nucleic Acids Research. 8: 169-81. PMID 7355127 DOI: 10.1093/nar/8.1.169 |
0.81 |
|
| 1980 |
Geerdes HA, Van Boom JH, Hilbers CW. Codon-anticodon interaction in tRNAPhe. II. A nuclear magnetic resonance study of the binding of the codon UUC Journal of Molecular Biology. 142: 219-230. PMID 7003160 DOI: 10.1016/0022-2836(80)90046-7 |
0.461 |
|
| 1980 |
Backendorf C, Overbeek GP, Van Boom JH, Van Der Marel G, Veeneman G, Van Duin J. Role of 16-S RNA in ribosome messenger recognition European Journal of Biochemistry. 110: 599-604. PMID 7002555 |
0.428 |
|
| 1980 |
Olsthoorn CS, Bostelaar LJ, Van Boom JH, Altona C. Conformational characteristics of the trinucleoside diphosphate dApdApdA and its constituents from nuclear magnetic resonance and circular dichroism studies. Extrapolation to the stacked conformers. European Journal of Biochemistry / Febs. 112: 95-110. PMID 6935052 DOI: 10.1111/J.1432-1033.1980.Tb04991.X |
0.609 |
|
| 1980 |
Crawford JL, Kolpak FJ, Wang AH, Quigley GJ, van Boom JH, van der Marel G, Rich A. The tetramer d(CpGpCpG) crystallizes as a left-handed double helix. Proceedings of the National Academy of Sciences of the United States of America. 77: 4016-20. PMID 6933447 DOI: 10.1073/PNAS.77.7.4016 |
0.595 |
|
| 1980 |
Geerdes HA, Van Boom JH, Hilbers CW. Nuclear magnetic resonance studies of codon-anticodon interaction in tRNAPhe. I. Effect of binding complementary tetra and pentanucleotides to the anticodon Journal of Molecular Biology. 142: 195-217. PMID 6160254 DOI: 10.1016/0022-2836(80)90045-5 |
0.465 |
|
| 1980 |
Baas PD, van Teeffelen HA, Teertstra WR, Jansz HS, Veeneman GH, van der Marel GA, van Boom JH. Restoration of the biological activity of in vitro synthesized phi X DNA by transfection of ung- spheroplasts or dUTPase treatment. Febs Letters. 110: 15-20. PMID 6101560 DOI: 10.1016/0014-5793(80)80012-3 |
0.432 |
|
| 1978 |
Geerdes HAM, Van Boom JH, Hilbers CW. Codon-anticodon interaction in Yeast tRNAPhe an 1H NMR study Febs Letters. 88: 27-32. PMID 346374 DOI: 10.1016/0014-5793(78)80599-7 |
0.495 |
|
| 1977 |
van Boom JH, Burgers PM, Haasnoot CA. Synthesis of 3'-phosphates of diribonucleoside monophosphates via phosphotriester intermediates. Nucleic Acids Research. 3: 2731-47. PMID 995650 DOI: 10.1093/nar/3.10.2731 |
0.766 |
|
| 1977 |
De Leeuw HP, De Jager JR, Koeners HJ, Van Boom JH, Altona C. Puromycin and some of its analogues: conformational properties in solution. A 360-MHz nuclear-magnetic-resonance investigation. European Journal of Biochemistry / Febs. 76: 209-17. PMID 880948 DOI: 10.1111/J.1432-1033.1977.Tb11586.X |
0.582 |
|
| 1977 |
van Boom JH, Burgers PM, van der Marel G, Verdegaal CH, Wille G. Synthesis of oligonucleotides with sequences identical with or analogous to the 3'-end of 16S ribosomal RNA of Escherichia coli: preparation of A-C-C-U-C-C via the modified phosphotriester method. Nucleic Acids Research. 4: 1047-63. PMID 325524 DOI: 10.1093/NAR/4.4.1047 |
0.428 |
|
| 1976 |
Altona C, Van Boom JH, Haasnoot CA. Conformational analysis of a DNA triplet in aqueous solution. Thymidylyl-(3'-5')-thymidylyl-(3'-5')-2'-deoxyadenosine, d(T-T-A), studied by 1H nuclear magnetic resonance at 360 MHz. European Journal of Biochemistry / Febs. 71: 557-62. PMID 1009965 DOI: 10.1111/J.1432-1033.1976.Tb11145.X |
0.824 |
|
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