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Anthony Santella, Ph.D. - Publications

Affiliations: 
2005 Rutgers University, New Brunswick, New Brunswick, NJ, United States 
Area:
Computer Science, Design and Decorative Arts, Cognitive Psychology
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30 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2022 Santella A, Kolotuev I, Kizilyaprak C, Bao Z. Cross-modality synthesis of EM time series and live fluorescence imaging. Elife. 11. PMID 35666127 DOI: 10.7554/eLife.77918  0.565
2021 Sengupta T, Koonce NL, Vázquez-Martínez N, Moyle MW, Duncan LH, Emerson SE, Han X, Shao L, Wu Y, Santella A, Fan L, Bao Z, Mohler W, Shroff H, Colón-Ramos DA. Differential adhesion regulates neurite placement via a retrograde zippering mechanism. Elife. 10. PMID 34783657 DOI: 10.7554/eLife.71171  0.495
2021 Moyle MW, Barnes KM, Kuchroo M, Gonopolskiy A, Duncan LH, Sengupta T, Shao L, Guo M, Santella A, Christensen R, Kumar A, Wu Y, Moon KR, Wolf G, Krishnaswamy S, et al. Structural and developmental principles of neuropil assembly in C. elegans. Nature. PMID 33627875 DOI: 10.1038/s41586-020-03169-5  0.513
2020 Barnes KM, Fan L, Moyle MW, Brittin CA, Xu Y, Colón-Ramos DA, Santella A, Bao Z. Cadherin preserves cohesion across involuting tissues during neurulation. Elife. 9. PMID 33030428 DOI: 10.7554/eLife.58626  0.49
2020 Guo M, Li Y, Su Y, Lambert T, Nogare DD, Moyle MW, Duncan LH, Ikegami R, Santella A, Rey-Suarez I, Green D, Beiriger A, Chen J, Vishwasrao H, Ganesan S, et al. Rapid image deconvolution and multiview fusion for optical microscopy. Nature Biotechnology. PMID 32601431 DOI: 10.1038/S41587-020-0560-X  0.589
2019 Wang D, Lu Z, Xu Y, Wang ZI, Santella A, Bao Z. Cellular structure image classification with small targeted training samples. Ieee Access : Practical Innovations, Open Solutions. 7: 148967-148974. PMID 32832309 DOI: 10.1109/Access.2019.2940161  0.531
2019 Duncan LH, Moyle MW, Shao L, Sengupta T, Ikegami R, Kumar A, Guo M, Christensen R, Santella A, Bao Z, Shroff H, Mohler W, Colón-Ramos DA. Isotropic Light-Sheet Microscopy and Automated Cell Lineage Analyses to Catalogue Caenorhabditis elegans Embryogenesis with Subcellular Resolution. Journal of Visualized Experiments : Jove. PMID 31233035 DOI: 10.3791/59533  0.657
2019 Christensen R, Bokinsky A, Santella A, Moyle M, Guo M, Lauziere A, Ardiel E, Vishwasrao HD, Harvey B, Levin M, Karaj N, Mohler W, Daniel Colón-Ramos D, Bao Z, Shroff H. Generating a 4D Atlas of Nuclear Positions in Embryonic Caenorhabditis elegans Biophysical Journal. 116: 558a. DOI: 10.1016/J.Bpj.2018.11.3001  0.502
2018 Katzman B, Tang D, Santella A, Bao Z. AceTree: a major update and case study in the long term maintenance of open-source scientific software. Bmc Bioinformatics. 19: 121. PMID 29618316 DOI: 10.1186/S12859-018-2127-0  0.525
2017 Shah PK, Santella A, Jacobo A, Siletti K, Hudspeth AJ, Bao Z. An In Toto Approach to Dissecting Cellular Interactions in Complex Tissues. Developmental Cell. 43: 530-540.e4. PMID 29161596 DOI: 10.1016/J.Devcel.2017.10.021  0.598
2017 Wang E, Santella A, Wang Z, Wang D, Bao Z. Visualization of 3-Dimensional Vectors in a Dynamic Embryonic System—WormGUIDES Journal of Computer and Communications. 5: 70-79. DOI: 10.4236/Jcc.2017.512008  0.524
2016 Kumar A, Christensen R, Guo M, Chandris P, Duncan W, Wu Y, Santella A, Moyle M, Winter PW, Colón-Ramos D, Bao Z, Shroff H. Using Stage- and Slit-Scanning to Improve Contrast and Optical Sectioning in Dual-View Inverted Light Sheet Microscopy (diSPIM). The Biological Bulletin. 231: 26-39. PMID 27638693 DOI: 10.1086/689589  0.577
2015 Christensen RP, Bokinsky A, Santella A, Wu Y, Marquina-Solis J, Guo M, Kovacevic I, Kumar A, Winter PW, Tashakkori N, McCreedy E, Liu H, McAuliffe M, Mohler W, Colon-Ramos DA, et al. Untwisting the Caenorhabditis elegans embryo. Elife. 4. PMID 26633880 DOI: 10.7554/Elife.10070  0.623
2015 Roy D, Michaelson D, Hochman T, Santella A, Bao Z, Goldberg JD, Hubbard EJ. Cell cycle features of C. elegans germline stem/progenitor cells vary temporally and spatially. Developmental Biology. PMID 26577869 DOI: 10.1016/J.Ydbio.2015.10.031  0.569
2015 Santella A, Kovacevic I, Herndon LA, Hall DH, Du Z, Bao Z. Digital development: a database of cell lineage differentiation in C. elegans with lineage phenotypes, cell-specific gene functions and a multiscale model. Nucleic Acids Research. PMID 26503254 DOI: 10.1093/Nar/Gkv1119  0.615
2015 Du Z, Santella A, He F, Shah PK, Kamikawa Y, Bao Z. The Regulatory Landscape of Lineage Differentiation in a Metazoan Embryo. Developmental Cell. 34: 592-607. PMID 26321128 DOI: 10.1016/J.Devcel.2015.07.014  0.592
2015 Vidal B, Santella A, Serrano-Saiz E, Bao Z, Chuang CF, Hobert O. C. elegans SoxB genes are dispensable for embryonic neurogenesis but required for terminal differentiation of specific neuron types. Development (Cambridge, England). 142: 2464-77. PMID 26153233 DOI: 10.1242/Dev.125740  0.568
2015 Santella A, Catena R, Kovacevic I, Shah P, Yu Z, Marquina-Solis J, Kumar A, Wu Y, Schaff J, Colón-Ramos D, Shroff H, Mohler WA, Bao Z. WormGUIDES: an interactive single cell developmental atlas and tool for collaborative multidimensional data exploration. Bmc Bioinformatics. 16: 189. PMID 26051157 DOI: 10.1186/S12859-015-0627-8  0.597
2015 Christensen RP, Bokinsky A, Santella A, Wu Y, Marquina-Solis J, Guo M, Kovacevic I, Kumar A, Winter PW, Tashakkori N, McCreedy E, Liu H, McAuliffe M, Mohler W, Colón-Ramos DA, et al. Author response: Untwisting the Caenorhabditis elegans embryo Elife. DOI: 10.7554/Elife.10070.058  0.501
2015 Vidal B, Santella A, Serrano-Sai E, Bao Z, Chuang CF, Hobert O. C. Elegans SoxB genes are dispensable for embryonic neurogenesis but required for terminal differentiation of specific neuron types Development (Cambridge). 142: 2464-2477. DOI: 10.1242/dev.125740  0.492
2015 Christensen R, Bokinsky A, Santella A, Wu Y, Marquina J, Kovacevic I, Kumar A, Winter P, McCreedy E, Mohler W, Bao Z, Colón-Ramos D, Shroff H. An imaging and analysis toolset for the study of Caenorhabditis elegans neurodevelopment Progress in Biomedical Optics and Imaging - Proceedings of Spie. 9334. DOI: 10.1117/12.2082394  0.613
2015 Du Z, Santella A, He F, Shah PK, Kamikawa Y, Bao Z. The Regulatory Landscape of Lineage Differentiation in a Metazoan Embryo Developmental Cell. DOI: 10.1016/j.devcel.2015.07.014  0.504
2014 Vogel JL, Michaelson D, Santella A, Hubbard EJ, Bao Z. Irises: A practical tool for image-based analysis of cellular DNA content. Worm. 3: e29041. PMID 25254149 DOI: 10.4161/worm.29041  0.497
2014 Santella A, Du Z, Bao Z. A semi-local neighborhood-based framework for probabilistic cell lineage tracing. Bmc Bioinformatics. 15: 217. PMID 24964866 DOI: 10.1186/1471-2105-15-217  0.58
2014 Du Z, Santella A, He F, Tiongson M, Bao Z. De novo inference of systems-level mechanistic models of development from live-imaging-based phenotype analysis. Cell. 156: 359-72. PMID 24439388 DOI: 10.1016/J.Cell.2013.11.046  0.63
2013 Wu Y, Wawrzusin P, Senseney J, Fischer RS, Christensen R, Santella A, York AG, Winter PW, Waterman CM, Bao Z, Colón-Ramos DA, McAuliffe M, Shroff H. Spatially isotropic four-dimensional imaging with dual-view plane illumination microscopy. Nature Biotechnology. 31: 1032-8. PMID 24108093 DOI: 10.1038/Nbt.2713  0.576
2012 Pohl C, Tiongson M, Moore JL, Santella A, Bao Z. Actomyosin-based self-organization of cell internalization during C. elegans gastrulation. Bmc Biology. 10: 94. PMID 23198792 DOI: 10.1186/1741-7007-10-94  0.652
2011 Wu Y, Ghitani A, Christensen R, Santella A, Du Z, Rondeau G, Bao Z, Colón-Ramos D, Shroff H. Inverted selective plane illumination microscopy (iSPIM) enables coupled cell identity lineaging and neurodevelopmental imaging in Caenorhabditis elegans. Proceedings of the National Academy of Sciences of the United States of America. 108: 17708-13. PMID 22006307 DOI: 10.1073/Pnas.1108494108  0.616
2010 Santella A, Du Z, Nowotschin S, Hadjantonakis AK, Bao Z. A hybrid blob-slice model for accurate and efficient detection of fluorescence labeled nuclei in 3D. Bmc Bioinformatics. 11: 580. PMID 21114815 DOI: 10.1186/1471-2105-11-580  0.584
2010 Keller PJ, Schmidt AD, Santella A, Khairy K, Bao Z, Wittbrodt J, Stelzer EH. Fast, high-contrast imaging of animal development with scanned light sheet-based structured-illumination microscopy. Nature Methods. 7: 637-42. PMID 20601950 DOI: 10.1038/Nmeth.1476  0.586
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