Roland Dunbrack, Ph.D. - Publications

Affiliations: 
Computer and Information Science Temple University, Philadelphia, PA, United States 
Area:
Information Science, Computer Science, Bioinformatics Biology
Website:
http://dunbrack.fccc.edu

97 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Clark WT, Kasak L, Bakolitsa C, Hu Z, Andreoletti G, Babbi G, Bromberg Y, Casadio R, Dunbrack R, Folkman L, Ford CT, Jones D, Katsonis P, Kundu K, Lichtarge O, et al. Assessment of predicted enzymatic activity of alpha-N-acetylglucosaminidase (NAGLU) variants of unknown significance for CAGI 2016. Human Mutation. PMID 31342580 DOI: 10.1002/humu.23875  1
2019 Kueppers F, Andrake MD, Xu Q, Dunbrack RL, Kim J, Sanders CL. Protein modeling to assess the pathogenicity of rare variants of SERPINA1 in patients suspected of having Alpha 1 Antitrypsin Deficiency. Bmc Medical Genetics. 20: 125. PMID 31307431 DOI: 10.1186/s12881-019-0852-5  1
2019 Xu Q, Dunbrack RL. Principles and characteristics of biological assemblies in experimentally determined protein structures. Current Opinion in Structural Biology. 55: 34-49. PMID 30965224 DOI: 10.1016/j.sbi.2019.03.006  1
2019 Modi V, Dunbrack RL. Defining a new nomenclature for the structures of active and inactive kinases. Proceedings of the National Academy of Sciences of the United States of America. PMID 30867294 DOI: 10.1073/pnas.1814279116  1
2019 Shapovalov M, Vucetic S, Dunbrack RL. A new clustering and nomenclature for beta turns derived from high-resolution protein structures. Plos Computational Biology. 15: e1006844. PMID 30845191 DOI: 10.1371/journal.pcbi.1006844  1
2019 Nicolas E, Demidova EV, Iqbal W, Serebriiskii IG, Vlasenkova R, Ghatalia P, Zhou Y, Rainey K, Forman AF, Dunbrack RL, Golemis EA, Hall MJ, Daly MB, Arora S. Interaction of germline variants in a family with a history of early-onset clear cell renal cell carcinoma. Molecular Genetics & Genomic Medicine. e556. PMID 30680959 DOI: 10.1002/mgg3.556  1
2018 Gupta S, Kelow S, Wang L, Andrake M, Dunbrack RL, Kruger WD. Mouse modeling and structural analysis of the p.G307S mutation in human cystathionine β-synthase () reveal effects on CBS activity but not stability. The Journal of Biological Chemistry. PMID 30030379 DOI: 10.1074/jbc.RA118.002164  1
2018 Adolf-Bryfogle J, Kalyuzhniy O, Kubitz M, Weitzner BD, Hu X, Adachi Y, Schief WR, Dunbrack RL. RosettaAntibodyDesign (RAbD): A general framework for computational antibody design. Plos Computational Biology. 14: e1006112. PMID 29702641 DOI: 10.1371/journal.pcbi.1006112  1
2018 Matthew EM, Yang Z, Peri S, Andrake M, Dunbrack R, Ross E, El-Deiry WS. Plk2 Loss Commonly Occurs in Colorectal Carcinomas but not Adenomas: Relationship to mTOR Signaling. Neoplasia (New York, N.Y.). 20: 244-255. PMID 29448085 DOI: 10.1016/j.neo.2018.01.004  1
2017 Deihimi S, Lev A, Slifker M, Shagisultanova E, Xu Q, Jung K, Vijayvergia N, Ross EA, Xiu J, Swensen J, Gatalica Z, Andrake M, Dunbrack RL, El-Deiry WS. BRCA2, EGFR, and NTRK mutations in mismatch repair-deficient colorectal cancers with MSH2 or MLH1 mutations. Oncotarget. PMID 28591715 DOI: 10.18632/oncotarget.18098  1
2017 Arora S, Huwe PJ, Sikder R, Shah M, Browne AJ, Lesh R, Nicolas E, Deshpande S, Hall MJ, Dunbrack RL, Golemis EA. Functional analysis of rare variants in mismatch repair proteins augments results from computation-based predictive methods. Cancer Biology & Therapy. 0. PMID 28494185 DOI: 10.1080/15384047.2017.1326439  1
2017 Carraro M, Minervini G, Giollo M, Bromberg Y, Capriotti E, Casadio R, Dunbrack R, Elefanti L, Fariselli P, Ferrari C, Gough J, Katsonis P, Leonardi E, Lichtarge O, Menin C, et al. Performance of in silico tools for the evaluation of p16INK4a (CDKN2A) variants in CAGI. Human Mutation. PMID 28440912 DOI: 10.1002/humu.23235  1
2017 Alford RF, Leaver-Fay A, Jeliazkov JR, O'Meara MJ, DiMaio FP, Park H, Shapovalov MV, Renfrew PD, Mulligan VK, Kappel K, Labonte JW, Pacella MS, Bonneau R, Bradley P, Dunbrack RL, et al. The Rosetta all-atom energy function for macromolecular modeling and design. Journal of Chemical Theory and Computation. PMID 28430426 DOI: 10.1021/acs.jctc.7b00125  1
2017 Xu Q, Tang Q, Katsonis P, Lichtarge O, Jones D, Bovo S, Babbi G, Martelli PL, Casadio R, Lee GR, Seok C, Fenton AW, Dunbrack RL. Benchmarking predictions of allostery in liver pyruvate kinase in CAGI4. Human Mutation. PMID 28370845 DOI: 10.1002/humu.23222  1
2017 Weitzner BD, Jeliazkov JR, Lyskov S, Marze N, Kuroda D, Frick R, Adolf-Bryfogle J, Biswas N, Dunbrack RL, Gray JJ. Modeling and docking of antibody structures with Rosetta. Nature Protocols. 12: 401-416. PMID 28125104 DOI: 10.1038/nprot.2016.180  1
2016 Huwe PJ, Xu Q, Shapovalov MV, Modi V, Andrake MD, Dunbrack RL. Biological function derived from predicted structures in CASP11. Proteins. PMID 27181425 DOI: 10.1002/prot.24997  1
2016 Modi V, Xu Q, Adhikari S, Dunbrack RL. Assessment of template-based modeling of protein structure in CASP11. Proteins. PMID 27081927 DOI: 10.1002/prot.25049  1
2016 Modi V, Dunbrack RL. Assessment of refinement of template-based models in CASP11. Proteins. PMID 27081793 DOI: 10.1002/prot.25048  1
2016 Kinch LN, Li W, Schaeffer RD, Dunbrack RL, Monastyrskyy B, Kryshtafovych A, Grishin NV. CASP 11 Target Classification. Proteins. PMID 26756794 DOI: 10.1002/prot.24982  0.01
2015 Xu Q, Malecka KL, Fink L, Jordan EJ, Duffy E, Kolander S, Peterson JR, Dunbrack RL. Identifying three-dimensional structures of autophosphorylation complexes in crystals of protein kinases. Science Signaling. 8: rs13. PMID 26628682 DOI: 10.1126/scisignal.aaa6711  1
2015 Nicolas E, Arora S, Zhou Y, Serebriiskii IG, Andrake MD, Handorf ED, Bodian DL, Vockley JG, Dunbrack RL, Ross EA, Ealeston B, Hall MJ, Golemis EA, Giri VN, Daly MB. Systematic evaluation of underlying defects in DNA repair as an approach to case-only assessment of familial prostate cancer. Oncotarget. PMID 26485759 DOI: 10.18632/oncotarget.5554  1
2015 Lehmann A, Wixted JH, Shapovalov MV, Roder H, Dunbrack RL, Robinson MK. Stability engineering of anti-EGFR scFv antibodies by rational design of a lambda-to-kappa swap of the VL framework using a structure-guided approach. Mabs. 7: 1058-71. PMID 26337947 DOI: 10.1080/19420862.2015.1088618  1
2015 Shih J, Bashir B, Gustafson KS, Andrake M, Dunbrack RL, Goldstein LJ, Boumber Y. Cancer Signature Investigation: ERBB2 (HER2)-Activating Mutation and Amplification-Positive Breast Carcinoma Mimicking Lung Primary. Journal of the National Comprehensive Cancer Network : Jnccn. 13: 947-52. PMID 26285240  1
2015 Plimack ER, Dunbrack RL, Brennan TA, Andrake MD, Zhou Y, Serebriiskii IG, Slifker M, Alpaugh K, Dulaimi E, Palma N, Hoffman-Censits J, Bilusic M, Wong YN, Kutikov A, Viterbo R, et al. Defects in DNA Repair Genes Predict Response to Neoadjuvant Cisplatin-based chemotherapy in Muscle-invasive Bladder Cancer. European Urology. PMID 26238431 DOI: 10.1016/j.eururo.2015.07.009  1
2015 Egleston BL, Pedraza O, Wong YN, Dunbrack RL, Griffin CL, Ross EA, Beck JR. Characteristics of clinical trials that require participants to be fluent in English. Clinical Trials (London, England). PMID 26152834 DOI: 10.1177/1740774515592881  1
2015 Weitzner BD, Dunbrack RL, Gray JJ. The origin of CDR H3 structural diversity. Structure (London, England : 1993). 23: 302-11. PMID 25579815 DOI: 10.1016/j.str.2014.11.010  1
2015 Vijayan RS, He P, Modi V, Duong-Ly KC, Ma H, Peterson JR, Dunbrack RL, Levy RM. Conformational analysis of the DFG-out kinase motif and biochemical profiling of structurally validated type II inhibitors. Journal of Medicinal Chemistry. 58: 466-79. PMID 25478866 DOI: 10.1021/jm501603h  1
2015 Adolf-Bryfogle J, Xu Q, North B, Lehmann A, Dunbrack RL. PyIgClassify: a database of antibody CDR structural classifications. Nucleic Acids Research. 43: D432-8. PMID 25392411 DOI: 10.1093/nar/gku1106  1
2015 Shagisultanova E, Dunbrack RL, Golemis EA. Issues in interpreting the in vivo activity of Aurora-A. Expert Opinion On Therapeutic Targets. 19: 187-200. PMID 25384454 DOI: 10.1517/14728222.2014.981154  1
2014 Shapovalov MV, Wang Q, Xu Q, Andrake M, Dunbrack RL. BioAssemblyModeler (BAM): user-friendly homology modeling of protein homo- and heterooligomers. Plos One. 9: e98309. PMID 24922057 DOI: 10.1371/journal.pone.0098309  1
2014 Law MJ, Mallory MJ, Dunbrack RL, Strich R. Acetylation of the transcriptional repressor Ume6p allows efficient promoter release and timely induction of the meiotic transient transcription program in yeast. Molecular and Cellular Biology. 34: 631-42. PMID 24298021 DOI: 10.1128/MCB.00256-13  0.01
2013 Anastassiadis T, Duong-Ly KC, Deacon SW, Lafontant A, Ma H, Devarajan K, Dunbrack RL, Wu J, Peterson JR. A highly selective dual insulin receptor (IR)/insulin-like growth factor 1 receptor (IGF-1R) inhibitor derived from an extracellular signal-regulated kinase (ERK) inhibitor. The Journal of Biological Chemistry. 288: 28068-77. PMID 23935097 DOI: 10.1074/jbc.M113.505032  1
2013 Wei Q, Dunbrack RL. The role of balanced training and testing data sets for binary classifiers in bioinformatics. Plos One. 8: e67863. PMID 23874456 DOI: 10.1371/journal.pone.0067863  1
2013 Adolf-Bryfogle J, Dunbrack RL. The PyRosetta Toolkit: a graphical user interface for the Rosetta software suite. Plos One. 8: e66856. PMID 23874400 DOI: 10.1371/journal.pone.0066856  1
2013 Slusky JS, Dunbrack RL. Charge asymmetry in the proteins of the outer membrane. Bioinformatics (Oxford, England). 29: 2122-8. PMID 23782617 DOI: 10.1093/bioinformatics/btt355  0.04
2013 Bojja RS, Andrake MD, Merkel G, Weigand S, Dunbrack RL, Skalka AM. Architecture and assembly of HIV integrase multimers in the absence of DNA substrates. The Journal of Biological Chemistry. 288: 7373-86. PMID 23322775 DOI: 10.1074/jbc.M112.434431  1
2013 Balaburski GM, Leu JI, Beeharry N, Hayik S, Andrake MD, Zhang G, Herlyn M, Villanueva J, Dunbrack RL, Yen T, George DL, Murphy ME. A modified HSP70 inhibitor shows broad activity as an anticancer agent. Molecular Cancer Research : McR. 11: 219-29. PMID 23303345 DOI: 10.1158/1541-7786.MCR-12-0547-T  1
2013 Jaffe EK, Stith L, Lawrence SH, Andrake M, Dunbrack RL. A new model for allosteric regulation of phenylalanine hydroxylase: implications for disease and therapeutics. Archives of Biochemistry and Biophysics. 530: 73-82. PMID 23296088 DOI: 10.1016/j.abb.2012.12.017  1
2013 Wei Q, Xu Q, Dunbrack RL. Prediction of phenotypes of missense mutations in human proteins from biological assemblies. Proteins. 81: 199-213. PMID 22965855 DOI: 10.1002/prot.24176  1
2013 Nikonova AS, Astsaturov I, Serebriiskii IG, Dunbrack RL, Golemis EA. Aurora A kinase (AURKA) in normal and pathological cell division. Cellular and Molecular Life Sciences : Cmls. 70: 661-87. PMID 22864622 DOI: 10.1007/s00018-012-1073-7  1
2012 Xu Q, Dunbrack RL. Assignment of protein sequences to existing domain and family classification systems: Pfam and the PDB. Bioinformatics (Oxford, England). 28: 2763-72. PMID 22942020 DOI: 10.1093/bioinformatics/bts533  1
2012 Roberts JL, Buckley RH, Luo B, Pei J, Lapidus A, Peri S, Wei Q, Shin J, Parrott RE, Dunbrack RL, Testa JR, Zhong XP, Wiest DL. CD45-deficient severe combined immunodeficiency caused by uniparental disomy. Proceedings of the National Academy of Sciences of the United States of America. 109: 10456-61. PMID 22689986 DOI: 10.1073/pnas.1202249109  1
2012 Berkholz DS, Driggers CM, Shapovalov MV, Dunbrack RL, Karplus PA. Nonplanar peptide bonds in proteins are common and conserved but not biased toward active sites. Proceedings of the National Academy of Sciences of the United States of America. 109: 449-53. PMID 22198840 DOI: 10.1073/pnas.1107115108  1
2012 Krieger E, Dunbrack RL, Hooft RW, Krieger B. Assignment of protonation states in proteins and ligands: combining pKa prediction with hydrogen bonding network optimization. Methods in Molecular Biology (Clifton, N.J.). 819: 405-21. PMID 22183550 DOI: 10.1007/978-1-61779-465-0_25  1
2012 Beglov D, Hall DR, Brenke R, Shapovalov MV, Dunbrack RL, Kozakov D, Vajda S. Minimal ensembles of side chain conformers for modeling protein-protein interactions. Proteins. 80: 591-601. PMID 22105850 DOI: 10.1002/prot.23222  1
2011 Mehra R, Serebriiskii IG, Dunbrack RL, Robinson MK, Burtness B, Golemis EA. Protein-intrinsic and signaling network-based sources of resistance to EGFR- and ErbB family-targeted therapies in head and neck cancer. Drug Resistance Updates : Reviews and Commentaries in Antimicrobial and Anticancer Chemotherapy. 14: 260-79. PMID 21920801 DOI: 10.1016/j.drup.2011.08.002  1
2011 Shapovalov MV, Dunbrack RL. A smoothed backbone-dependent rotamer library for proteins derived from adaptive kernel density estimates and regressions. Structure (London, England : 1993). 19: 844-58. PMID 21645855 DOI: 10.1016/j.str.2011.03.019  1
2011 Xu Q, Dunbrack RL. The protein common interface database (ProtCID)--a comprehensive database of interactions of homologous proteins in multiple crystal forms. Nucleic Acids Research. 39: D761-70. PMID 21036862 DOI: 10.1093/nar/gkq1059  1
2011 North B, Lehmann A, Dunbrack RL. A new clustering of antibody CDR loop conformations. Journal of Molecular Biology. 406: 228-56. PMID 21035459 DOI: 10.1016/j.jmb.2010.10.030  1
2010 Hayik SA, Dunbrack R, Merz KM. A Mixed QM/MM Scoring Function to Predict Protein-Ligand Binding Affinity. Journal of Chemical Theory and Computation. 6: 3079-3091. PMID 21221417 DOI: 10.1021/ct100315g  0.01
2010 Plotnikova OV, Pugacheva EN, Dunbrack RL, Golemis EA. Rapid calcium-dependent activation of Aurora-A kinase. Nature Communications. 1: 64. PMID 20842194 DOI: 10.1038/ncomms1061  1
2010 Doulias PT, Greene JL, Greco TM, Tenopoulou M, Seeholzer SH, Dunbrack RL, Ischiropoulos H. Structural profiling of endogenous S-nitrosocysteine residues reveals unique features that accommodate diverse mechanisms for protein S-nitrosylation. Proceedings of the National Academy of Sciences of the United States of America. 107: 16958-63. PMID 20837516 DOI: 10.1073/pnas.1008036107  1
2010 Wei Q, Wang L, Wang Q, Kruger WD, Dunbrack RL. Testing computational prediction of missense mutation phenotypes: functional characterization of 204 mutations of human cystathionine beta synthase. Proteins. 78: 2058-74. PMID 20455263 DOI: 10.1002/prot.22722  1
2010 Shandler SJ, Shapovalov MV, Dunbrack RL, DeGrado WF. Development of a rotamer library for use in beta-peptide foldamer computational design. Journal of the American Chemical Society. 132: 7312-20. PMID 20446685 DOI: 10.1021/ja906700x  1
2010 Ting D, Wang G, Shapovalov M, Mitra R, Jordan MI, Dunbrack RL. Neighbor-dependent Ramachandran probability distributions of amino acids developed from a hierarchical Dirichlet process model. Plos Computational Biology. 6: e1000763. PMID 20442867 DOI: 10.1371/journal.pcbi.1000763  1
2010 Egleston BL, Dunbrack RL, Hall MJ. Clinical trials that explicitly exclude gay and lesbian patients. The New England Journal of Medicine. 362: 1054-5. PMID 20237357 DOI: 10.1056/NEJMc0912600  1
2010 Bourne PE, Beran B, Bi C, Bluhm W, Dunbrack R, Prlić A, Quinn G, Rose P, Shah R, Tao W, Weitzner B, Yukich B. Will widgets and semantic tagging change computational biology? Plos Computational Biology. 6: e1000673. PMID 20195550 DOI: 10.1371/journal.pcbi.1000673  1
2010 Xue B, Dunbrack RL, Williams RW, Dunker AK, Uversky VN. PONDR-FIT: a meta-predictor of intrinsically disordered amino acids. Biochimica Et Biophysica Acta. 1804: 996-1010. PMID 20100603 DOI: 10.1016/j.bbapap.2010.01.011  1
2010 Tong X, Zitserman D, Serebriiskii I, Andrake M, Dunbrack R, Roegiers F. Numb independently antagonizes Sanpodo membrane targeting and Notch signaling in Drosophila sensory organ precursor cells. Molecular Biology of the Cell. 21: 802-10. PMID 20053677 DOI: 10.1091/mbc.E09-09-0831  1
2010 Li C, Andrake M, Dunbrack R, Enders GH. A bifunctional regulatory element in human somatic Wee1 mediates cyclin A/Cdk2 binding and Crm1-dependent nuclear export. Molecular and Cellular Biology. 30: 116-30. PMID 19858290 DOI: 10.1128/MCB.01876-08  1
2009 Berkholz DS, Shapovalov MV, Dunbrack RL, Karplus PA. Conformation dependence of backbone geometry in proteins. Structure (London, England : 1993). 17: 1316-25. PMID 19836332 DOI: 10.1016/j.str.2009.08.012  1
2009 Krivov GG, Shapovalov MV, Dunbrack RL. Improved prediction of protein side-chain conformations with SCWRL4. Proteins. 77: 778-95. PMID 19603484 DOI: 10.1002/prot.22488  1
2009 Schwede T, Sali A, Honig B, Levitt M, Berman HM, Jones D, Brenner SE, Burley SK, Das R, Dokholyan NV, Dunbrack RL, Fidelis K, Fiser A, Godzik A, Huang YJ, et al. Outcome of a workshop on applications of protein models in biomedical research. Structure (London, England : 1993). 17: 151-9. PMID 19217386 DOI: 10.1016/j.str.2008.12.014  1
2009 Weitzner B, Meehan T, Xu Q, Dunbrack RL. An unusually small dimer interface is observed in all available crystal structures of cytosolic sulfotransferases. Proteins. 75: 289-95. PMID 19173308 DOI: 10.1002/prot.22347  1
2008 Wang Q, Dunbrack RL. An Integrated Database for Complex Protein Structure Modeling. Proceedings. Ieee International Conference On Bioinformatics and Biomedicine. 2008: 33-40. PMID 21151784 DOI: 10.1109/BIBMW.2008.4686206  1
2008 Wang Q, Canutescu AA, Dunbrack RL. SCWRL and MolIDE: computer programs for side-chain conformation prediction and homology modeling. Nature Protocols. 3: 1832-47. PMID 18989261 DOI: 10.1038/nprot.2008.184  1
2008 Xu Q, Canutescu AA, Wang G, Shapovalov M, Obradovic Z, Dunbrack RL. Statistical analysis of interface similarity in crystals of homologous proteins. Journal of Molecular Biology. 381: 487-507. PMID 18599072 DOI: 10.1016/j.jmb.2008.06.002  1
2008 Pietsch EC, Perchiniak E, Canutescu AA, Wang G, Dunbrack RL, Murphy ME. Oligomerization of BAK by p53 utilizes conserved residues of the p53 DNA binding domain. The Journal of Biological Chemistry. 283: 21294-304. PMID 18524770 DOI: 10.1074/jbc.M710539200  1
2008 Karplus PA, Shapovalov MV, Dunbrack RL, Berkholz DS. A forward-looking suggestion for resolving the stereochemical restraints debate: ideal geometry functions. Acta Crystallographica. Section D, Biological Crystallography. 64: 335-6. PMID 18323629 DOI: 10.1107/S0907444908002333  1
2007 Shapovalov MV, Canutescu AA, Dunbrack RL. BioDownloader: bioinformatics downloads and updates in a few clicks. Bioinformatics (Oxford, England). 23: 1437-9. PMID 17483505 DOI: 10.1093/bioinformatics/btm120  1
2007 Gudima S, Meier A, Dunbrack R, Taylor J, Bruss V. Two potentially important elements of the hepatitis B virus large envelope protein are dispensable for the infectivity of hepatitis delta virus. Journal of Virology. 81: 4343-7. PMID 17251287 DOI: 10.1128/JVI.02478-06  0.01
2007 Shapovalov MV, Dunbrack RL. Statistical and conformational analysis of the electron density of protein side chains. Proteins. 66: 279-303. PMID 17080462 DOI: 10.1002/prot.21150  1
2006 Xu Q, Canutescu A, Obradovic Z, Dunbrack RL. ProtBuD: a database of biological unit structures of protein families and superfamilies. Bioinformatics (Oxford, England). 22: 2876-82. PMID 17018535 DOI: 10.1093/bioinformatics/btl490  1
2006 Tang Y, Poustovoitov MV, Zhao K, Garfinkel M, Canutescu A, Dunbrack R, Adams PD, Marmorstein R. Structure of a human ASF1a-HIRA complex and insights into specificity of histone chaperone complex assembly. Nature Structural & Molecular Biology. 13: 921-9. PMID 16980972 DOI: 10.1038/nsmb1147  1
2006 Berman HM, Burley SK, Chiu W, Sali A, Adzhubei A, Bourne PE, Bryant SH, Dunbrack RL, Fidelis K, Frank J, Godzik A, Henrick K, Joachimiak A, Heymann B, Jones D, et al. Outcome of a Workshop on Archiving Structural Models of Biological Macromolecules Structure. 14: 1211-1217. PMID 16955948 DOI: 10.1016/j.str.2006.06.005  1
2006 Dunbrack RL. Sequence comparison and protein structure prediction. Current Opinion in Structural Biology. 16: 374-84. PMID 16713709 DOI: 10.1016/j.sbi.2006.05.006  0.01
2006 Krasley E, Cooper KF, Mallory MJ, Dunbrack R, Strich R. Regulation of the oxidative stress response through Slt2p-dependent destruction of cyclin C in Saccharomyces cerevisiae. Genetics. 172: 1477-86. PMID 16387872 DOI: 10.1534/genetics.105.052266  0.01
2005 Jin Y, Dunbrack RL. Assessment of disorder predictions in CASP6. Proteins. 61: 167-75. PMID 16187359 DOI: 10.1002/prot.20734  1
2005 Wang G, Jin Y, Dunbrack RL. Assessment of fold recognition predictions in CASP6. Proteins. 61: 46-66. PMID 16187346 DOI: 10.1002/prot.20721  1
2005 Tress M, Tai CH, Wang G, Ezkurdia I, López G, Valencia A, Lee B, Dunbrack RL. Domain definition and target classification for CASP6. Proteins. 61: 8-18. PMID 16187342 DOI: 10.1002/prot.20717  1
2005 Wang G, Dunbrack RL. PISCES: recent improvements to a PDB sequence culling server. Nucleic Acids Research. 33: W94-8. PMID 15980589 DOI: 10.1093/nar/gki402  1
2005 Tarn C, Merkel E, Canutescu AA, Shen W, Skorobogatko Y, Heslin MJ, Eisenberg B, Birbe R, Patchefsky A, Dunbrack R, Arnoletti JP, von Mehren M, Godwin AK. Analysis of KIT mutations in sporadic and familial gastrointestinal stromal tumors: therapeutic implications through protein modeling. Clinical Cancer Research : An Official Journal of the American Association For Cancer Research. 11: 3668-77. PMID 15897563 DOI: 10.1158/1078-0432.CCR-04-2515  1
2005 Canutescu AA, Dunbrack RL. MollDE: a homology modeling framework you can click with. Bioinformatics (Oxford, England). 21: 2914-6. PMID 15845657 DOI: 10.1093/bioinformatics/bti438  1
2005 Kahsay RY, Wang G, Gao G, Liao L, Dunbrack R. Quasi-consensus-based comparison of profile hidden Markov models for protein sequences. Bioinformatics (Oxford, England). 21: 2287-93. PMID 15797916 DOI: 10.1093/bioinformatics/bti374  1
2005 Zhang R, Poustovoitov MV, Ye X, Santos HA, Chen W, Daganzo SM, Erzberger JP, Serebriiskii IG, Canutescu AA, Dunbrack RL, Pehrson JR, Berger JM, Kaufman PD, Adams PD. Formation of MacroH2A-containing senescence-associated heterochromatin foci and senescence driven by ASF1a and HIRA. Developmental Cell. 8: 19-30. PMID 15621527 DOI: 10.1016/j.devcel.2004.10.019  1
2004 Wang G, Dunbrack RL. Scoring profile-to-profile sequence alignments. Protein Science : a Publication of the Protein Society. 13: 1612-26. PMID 15152092 DOI: 10.1110/ps.03601504  1
2003 Fischer D, Rychlewski L, Dunbrack RL, Ortiz AR, Elofsson A. CAFASP3: the third critical assessment of fully automated structure prediction methods. Proteins. 53: 503-16. PMID 14579340 DOI: 10.1002/prot.10538  1
2003 Canutescu AA, Shelenkov AA, Dunbrack RL. A graph-theory algorithm for rapid protein side-chain prediction. Protein Science : a Publication of the Protein Society. 12: 2001-14. PMID 12930999 DOI: 10.1110/ps.03154503  1
2003 Wang G, Dunbrack RL. PISCES: a protein sequence culling server. Bioinformatics (Oxford, England). 19: 1589-91. PMID 12912846  1
2003 Kundrat L, Martins J, Stith L, Dunbrack RL, Jaffe EK. A structural basis for half-of-the-sites metal binding revealed in Drosophila melanogaster porphobilinogen synthase. The Journal of Biological Chemistry. 278: 31325-30. PMID 12794073 DOI: 10.1074/jbc.M304124200  1
2003 Canutescu AA, Dunbrack RL. Cyclic coordinate descent: A robotics algorithm for protein loop closure. Protein Science : a Publication of the Protein Society. 12: 963-72. PMID 12717019 DOI: 10.1110/ps.0242703  1
2002 Cheng JD, Dunbrack RL, Valianou M, Rogatko A, Alpaugh RK, Weiner LM. Promotion of tumor growth by murine fibroblast activation protein, a serine protease, in an animal model. Cancer Research. 62: 4767-72. PMID 12183436  1
2002 Dunbrack RL. Rotamer libraries in the 21st century. Current Opinion in Structural Biology. 12: 431-40. PMID 12163064  0.01
2002 Prowse AH, Vanderveer L, Milling SW, Pan ZZ, Dunbrack RL, Xu XX, Godwin AK. OVCA2 is downregulated and degraded during retinoid-induced apoptosis. International Journal of Cancer. Journal International Du Cancer. 99: 185-92. PMID 11979432 DOI: 10.1002/ijc.10334  1
2002 Hang H, Zhang Y, Dunbrack RL, Wang C, Lieberman HB. Identification and characterization of a paralog of human cell cycle checkpoint gene HUS1. Genomics. 79: 487-92. PMID 11944979 DOI: 10.1006/geno.2002.6737  0.01
2002 Kahsay RY, Wang G, Dongre N, Gao G, Dunbrack RL. CASA: a server for the critical assessment of protein sequence alignment accuracy. Bioinformatics (Oxford, England). 18: 496-7. PMID 11934755  1
2002 Yi J, Cheng H, Andrake MD, Dunbrack RL, Roder H, Skalka AM. Mapping the epitope of an inhibitory monoclonal antibody to the C-terminal DNA-binding domain of HIV-1 integrase. The Journal of Biological Chemistry. 277: 12164-74. PMID 11805085 DOI: 10.1074/jbc.M105072200  1
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