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Ming C. Hammond - Publications

Affiliations: 
University of California, Berkeley, Berkeley, CA, United States 
Area:
mechanistic studies of RNA-based gene regulation
Website:
http://chem.berkeley.edu/faculty/hammond/index.php
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43 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Manna S, Kimoto M, Truong J, Bommisetti P, Peitz A, Hirao I, Hammond MC. Systematic Mutation and Unnatural Base Pair Incorporation Improves Riboswitch-Based Biosensor Response Time. Acs Sensors. PMID 37878677 DOI: 10.1021/acssensors.3c01266  0.335
2022 Mumbleau MM, Meyer MR, Hammond MC. Determination of In Vitro and Cellular Turn-on Kinetics for Fluorogenic RNA Aptamers. Journal of Visualized Experiments : Jove. PMID 36036622 DOI: 10.3791/64367  0.352
2022 Tan Z, Chan CH, Maleska M, Banuelos Jara B, Lohman BK, Ricks NJ, Bond DR, Hammond MC. The Signaling Pathway That cGAMP Riboswitches Found: Analysis and Application of Riboswitches to Study cGAMP Signaling in . International Journal of Molecular Sciences. 23. PMID 35163114 DOI: 10.3390/ijms23031183  0.363
2020 Kitto RZ, Christiansen KE, Hammond MC. RNA-based fluorescent biosensors for live cell detection of bacterial sRNA. Biopolymers. e23394. PMID 32786000 DOI: 10.1002/Bip.23394  0.545
2020 Anderson WA, Dippel AB, Maiden MM, Waters CM, Hammond MC. Chemiluminescent sensors for quantitation of the bacterial second messenger cyclic di-GMP. Methods in Enzymology. 640: 83-104. PMID 32560807 DOI: 10.1016/Bs.Mie.2020.04.004  0.377
2020 Li Y, Fin A, Rovira A, Su Y, Dippel A, Valderrama A, Riestra A, Nizet V, Hammond MC, Tor Y. Tuning the Innate Immune Response to Cyclic Dinucleotides Using Atomic Mutagenesis. Chembiochem : a European Journal of Chemical Biology. PMID 32346955 DOI: 10.1002/Cbic.202000162  0.323
2020 Dippel AB, Anderson WA, Park JH, Yildiz FH, Hammond MC. Development of ratiometric bioluminescent sensors for in vivo detection of bacterial signaling. Acs Chemical Biology. PMID 32186367 DOI: 10.1021/Acschembio.9B00800  0.362
2020 Su Y, Hammond MC. RNA-based fluorescent biosensors for live cell imaging of small molecules and RNAs. Current Opinion in Biotechnology. 63: 157-166. PMID 32086101 DOI: 10.1016/J.Copbio.2020.01.001  0.479
2019 Wright TA, Jiang L, Park JJ, Anderson WA, Chen G, Hallberg ZF, Nan B, Hammond MC. Second messengers and divergent HD-GYP phosphodiesterases regulate 3',3'-cGAMP signaling. Molecular Microbiology. PMID 31665539 DOI: 10.1111/Mmi.14412  0.354
2019 Hallberg ZF, Chan CH, Wright TA, Kranzusch PJ, Doxzen KW, Park JJ, Bond DR, Hammond MC. Structure and mechanism of a Hypr GGDEF enzyme that activates cGAMP signaling to control extracellular metal respiration. Elife. 8. PMID 30964001 DOI: 10.7554/Elife.43959  0.424
2018 Villa JK, Su Y, Contreras LM, Hammond MC. Synthetic Biology of Small RNAs and Riboswitches. Microbiology Spectrum. 6. PMID 29932045 DOI: 10.1128/Microbiolspec.Rwr-0007-2017  0.531
2018 Dippel AB, Anderson WA, Evans RS, Deutsch S, Hammond MC. Chemiluminescent Biosensors for Detection of Second Messenger Cyclic di-GMP. Acs Chemical Biology. PMID 29466657 DOI: 10.1021/Acschembio.7B01019  0.388
2018 Truong J, Hsieh YF, Truong L, Jia G, Hammond MC. Designing fluorescent biosensors using circular permutations of riboswitches. Methods (San Diego, Calif.). PMID 29458090 DOI: 10.1016/J.Ymeth.2018.02.014  0.423
2017 Yeo J, Dippel AB, Wang XC, Hammond MC. In Vivo Biochemistry: Single-cell dynamics of cyclic di-GMP in E. coli in response to zinc overload. Biochemistry. PMID 29052983 DOI: 10.1021/Acs.Biochem.7B00696  0.408
2017 Yeo J, Wang XC, Hammond MC. Live Flow Cytometry Analysis of c-di-GMP Levels in Single Cell Populations. Methods in Molecular Biology (Clifton, N.J.). 1657: 111-130. PMID 28889290 DOI: 10.1007/978-1-4939-7240-1_10  0.369
2017 Hallberg ZF, Su Y, Kitto RZ, Hammond MC. Engineering and In Vivo Applications of Riboswitches. Annual Review of Biochemistry. PMID 28375743 DOI: 10.1146/Annurev-Biochem-060815-014628  0.484
2016 Bose D, Su Y, Marcus A, Raulet DH, Hammond MC. An RNA-Based Fluorescent Biosensor for High-Throughput Analysis of the cGAS-cGAMP-STING Pathway. Cell Chemical Biology. PMID 27889408 DOI: 10.1016/J.Chembiol.2016.10.014  0.439
2016 Wang XC, Wilson SC, Hammond MC. Next-generation RNA-based fluorescent biosensors enable anaerobic detection of cyclic di-GMP. Nucleic Acids Research. PMID 27382070 DOI: 10.1093/Nar/Gkw580  0.662
2016 Su Y, Hickey SF, Keyser SG, Hammond MC. In vitro and in vivo enzyme activity screening via RNA-based fluorescent biosensors for S-adenosyl-L-homocysteine (SAH). Journal of the American Chemical Society. PMID 27191512 DOI: 10.1021/Jacs.6B01621  0.401
2016 Hallberg ZF, Wang XC, Wright TA, Nan B, Ad O, Yeo J, Hammond MC. Hybrid promiscuous (Hypr) GGDEF enzymes produce cyclic AMP-GMP (3', 3'-cGAMP). Proceedings of the National Academy of Sciences of the United States of America. PMID 26839412 DOI: 10.1073/Pnas.1515287113  0.361
2015 Gonzalez TL, Liang Y, Nguyen BN, Staskawicz BJ, Loqué D, Hammond MC. Tight regulation of plant immune responses by combining promoter and suicide exon elements. Nucleic Acids Research. PMID 26138488 DOI: 10.1093/Nar/Gkv655  0.661
2015 Kellenberger CA, Sales-Lee J, Pan Y, Gassaway MM, Herr AE, Hammond MC. A minimalist biosensor: Quantitation of cyclic Di-GMP using the conformational change of a riboswitch aptamer. Rna Biology. 0. PMID 26114964 DOI: 10.1080/15476286.2015.1062970  0.407
2015 Kellenberger CA, Hallberg ZF, Hammond MC. Live Cell Imaging Using Riboswitch-Spinach tRNA Fusions as Metabolite-Sensing Fluorescent Biosensors. Methods in Molecular Biology (Clifton, N.J.). 1316: 87-103. PMID 25967055 DOI: 10.1007/978-1-4939-2730-2_8  0.354
2015 Kellenberger CA, Chen C, Whiteley AT, Portnoy DA, Hammond MC. RNA-Based Fluorescent Biosensors for Live Cell Imaging of Second Messenger Cyclic di-AMP. Journal of the American Chemical Society. 137: 6432-5. PMID 25965978 DOI: 10.1021/Jacs.5B00275  0.472
2015 Kellenberger CA, Wilson SC, Hickey SF, Gonzalez TL, Su Y, Hallberg ZF, Brewer TF, Iavarone AT, Carlson HK, Hsieh YF, Hammond MC. GEMM-I riboswitches from Geobacter sense the bacterial second messenger cyclic AMP-GMP. Proceedings of the National Academy of Sciences of the United States of America. 112: 5383-8. PMID 25848022 DOI: 10.1073/Pnas.1419328112  0.747
2015 Ren A, Wang XC, Kellenberger CA, Rajashankar KR, Jones RA, Hammond MC, Patel DJ. Structural basis for molecular discrimination by a 3',3'-cGAMP sensing riboswitch. Cell Reports. 11: 1-12. PMID 25818298 DOI: 10.1016/J.Celrep.2015.03.004  0.43
2015 Kellenberger CA, Hammond MC. In vitro analysis of riboswitch-Spinach aptamer fusions as metabolite-sensing fluorescent biosensors. Methods in Enzymology. 550: 147-72. PMID 25605385 DOI: 10.1016/Bs.Mie.2014.10.045  0.465
2014 Pan Y, Duncombe TA, Kellenberger CA, Hammond MC, Herr AE. High-throughput electrophoretic mobility shift assays for quantitative analysis of molecular binding reactions. Analytical Chemistry. 86: 10357-64. PMID 25233437 DOI: 10.1021/Ac502700B  0.373
2014 Wilson SC, Cohen DT, Wang XC, Hammond MC. A neutral pH thermal hydrolysis method for quantification of structured RNAs. Rna (New York, N.Y.). 20: 1153-60. PMID 24860014 DOI: 10.1261/Rna.045856.114  0.643
2014 Hickey SF, Hammond MC. Structure-guided design of fluorescent S-adenosylmethionine analogs for a high-throughput screen to target SAM-I riboswitch RNAs. Chemistry & Biology. 21: 345-56. PMID 24560607 DOI: 10.1016/J.Chembiol.2014.01.004  0.502
2013 Diner EJ, Burdette DL, Wilson SC, Monroe KM, Kellenberger CA, Hyodo M, Hayakawa Y, Hammond MC, Vance RE. The innate immune DNA sensor cGAS produces a noncanonical cyclic dinucleotide that activates human STING. Cell Reports. 3: 1355-61. PMID 23707065 DOI: 10.1016/J.Celrep.2013.05.009  0.666
2013 Leppek K, Schott J, Reitter S, Poetz F, Hammond MC, Stoecklin G. Roquin promotes constitutive mRNA decay via a conserved class of stem-loop recognition motifs. Cell. 153: 869-81. PMID 23663784 DOI: 10.1016/J.Cell.2013.04.016  0.384
2013 Kellenberger CA, Wilson SC, Sales-Lee J, Hammond MC. RNA-based fluorescent biosensors for live cell imaging of second messengers cyclic di-GMP and cyclic AMP-GMP. Journal of the American Chemical Society. 135: 4906-9. PMID 23488798 DOI: 10.1021/Ja311960G  0.646
2013 Karns K, Vogan JM, Qin Q, Hickey SF, Wilson SC, Hammond MC, Herr AE. Microfluidic screening of electrophoretic mobility shifts elucidates riboswitch binding function. Journal of the American Chemical Society. 135: 3136-43. PMID 23343213 DOI: 10.1021/Ja310742M  0.629
2012 Hickey SF, Sridhar M, Westermann AJ, Qin Q, Vijayendra P, Liou G, Hammond MC. Transgene regulation in plants by alternative splicing of a suicide exon. Nucleic Acids Research. 40: 4701-10. PMID 22311854 DOI: 10.1093/Nar/Gks032  0.395
2011 Hammond MC. RNA folding: a tale of two riboswitches. Nature Chemical Biology. 7: 342-3. PMID 21587253 DOI: 10.1038/Nchembio.588  0.479
2011 Meyer MM, Hammond MC, Salinas Y, Roth A, Sudarsan N, Breaker RR. Challenges of ligand identification for riboswitch candidates. Rna Biology. 8: 5-10. PMID 21317561 DOI: 10.4161/Rna.8.1.13865  0.689
2010 Block KF, Hammond MC, Breaker RR. Evidence for widespread gene control function by the ydaO riboswitch candidate. Journal of Bacteriology. 192: 3983-9. PMID 20511502 DOI: 10.1128/Jb.00450-10  0.758
2009 Hammond MC, Wachter A, Breaker RR. A plant 5S ribosomal RNA mimic regulates alternative splicing of transcription factor IIIA pre-mRNAs. Nature Structural & Molecular Biology. 16: 541-9. PMID 19377483 DOI: 10.1038/Nsmb.1588  0.659
2008 Weinberg Z, Regulski EE, Hammond MC, Barrick JE, Yao Z, Ruzzo WL, Breaker RR. The aptamer core of SAM-IV riboswitches mimics the ligand-binding site of SAM-I riboswitches. Rna (New York, N.Y.). 14: 822-8. PMID 18369181 DOI: 10.1261/Rna.988608  0.699
2007 Hammond MC, Bartlett PA. Synthesis of amino acid-derived cyclic acyl amidines for use in beta-strand peptidomimetics. The Journal of Organic Chemistry. 72: 3104-7. PMID 17371075 DOI: 10.1021/Jo062664I  0.478
2006 Hammond MC, Harris BZ, Lim WA, Bartlett PA. Beta strand peptidomimetics as potent PDZ domain ligands. Chemistry & Biology. 13: 1247-51. PMID 17185220 DOI: 10.1016/J.Chembiol.2006.11.010  0.513
2006 Sudarsan N, Hammond MC, Block KF, Welz R, Barrick JE, Roth A, Breaker RR. Tandem riboswitch architectures exhibit complex gene control functions. Science (New York, N.Y.). 314: 300-4. PMID 17038623 DOI: 10.1126/Science.1130716  0.732
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