| Year |
Citation |
Score |
| 2024 |
Jiang D, Zhang J. Ascertainment Bias in the Genomic Test of Positive Selection on Regulatory Sequences. Molecular Biology and Evolution. 41. PMID 38149460 DOI: 10.1093/molbev/msad284 |
0.549 |
|
| 2023 |
Liu H, Sun M, Zhang J. Genomic estimates of mutation and substitution rates contradict the evolutionary speed hypothesis of the latitudinal diversity gradient. Proceedings. Biological Sciences. 290: 20231787. PMID 37876195 DOI: 10.1098/rspb.2023.1787 |
0.755 |
|
| 2023 |
Chen P, Zhang J. Transcriptomic analysis reveals the rareness of genetic assimilation of gene expression in environmental adaptations. Science Advances. 9: eadi3053. PMID 37756399 DOI: 10.1126/sciadv.adi3053 |
0.315 |
|
| 2023 |
Jiang D, Zhang J. Detecting natural selection in trait-trait coevolution. Bmc Ecology and Evolution. 23: 50. PMID 37700252 DOI: 10.1186/s12862-023-02164-4 |
0.541 |
|
| 2023 |
Jiang D, Zhang J. Ascertainment bias in the genomic test of positive selection on regulatory sequences. Biorxiv : the Preprint Server For Biology. PMID 37662307 DOI: 10.1101/2023.08.20.554030 |
0.551 |
|
| 2023 |
Jiang D, Cope AL, Zhang J, Pennell M. On the Decoupling of Evolutionary Changes in mRNA and Protein Levels. Molecular Biology and Evolution. 40. PMID 37498582 DOI: 10.1093/molbev/msad169 |
0.589 |
|
| 2023 |
Jiang D, Cope AL, Zhang J, Pennell M. Decoupling of evolutionary changes in mRNA and protein levels. Biorxiv : the Preprint Server For Biology. PMID 37066157 DOI: 10.1101/2023.04.08.536110 |
0.588 |
|
| 2023 |
Xu H, Li C, Xu C, Zhang J. Chance promoter activities illuminate the origins of eukaryotic intergenic transcriptions. Nature Communications. 14: 1826. PMID 37005399 DOI: 10.1038/s41467-023-37610-w |
0.404 |
|
| 2022 |
Sun M, Zhang J. Preferred synonymous codons are translated more accurately: Proteomic evidence, among-species variation, and mechanistic basis. Science Advances. 8: eabl9812. PMID 35857447 DOI: 10.1126/sciadv.abl9812 |
0.749 |
|
| 2022 |
Shen X, Song S, Li C, Zhang J. Synonymous mutations in representative yeast genes are mostly strongly non-neutral. Nature. PMID 35676473 DOI: 10.1038/s41586-022-04823-w |
0.446 |
|
| 2022 |
Zhang J, Xu C. Gene product diversity: adaptive or not? Trends in Genetics : Tig. PMID 35641344 DOI: 10.1016/j.tig.2022.05.002 |
0.343 |
|
| 2022 |
Chen P, Michel AH, Zhang J. Transposon insertional mutagenesis of diverse yeast strains suggests coordinated gene essentiality polymorphisms. Nature Communications. 13: 1490. PMID 35314699 DOI: 10.1038/s41467-022-29228-1 |
0.36 |
|
| 2021 |
Jiang D, Zhang J. Author Correction: The preponderance of nonsynonymous A-to-I RNA editing in coleoids is nonadaptive. Nature Communications. 12: 4200. PMID 34210976 DOI: 10.1038/s41467-021-23830-5 |
0.434 |
|
| 2021 |
Qian W, Zhang J. Codon usage bias and nuclear mRNA concentration: Correlation vs. causation. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 33941646 DOI: 10.1073/pnas.2104714118 |
0.395 |
|
| 2020 |
Sun M, Zhang J. Rampant false detection of adaptive phenotypic optimization by ParTI-based Pareto front inference. Molecular Biology and Evolution. PMID 33346805 DOI: 10.1093/molbev/msaa330 |
0.75 |
|
| 2020 |
Lyons DM, Zou Z, Xu H, Zhang J. Idiosyncratic epistasis creates universals in mutational effects and evolutionary trajectories. Nature Ecology & Evolution. PMID 32895516 DOI: 10.1038/s41559-020-01286-y |
0.767 |
|
| 2020 |
Zou Z, Zhang J. Are nonsynonymous transversions generally more deleterious than nonsynonymous transitions? Molecular Biology and Evolution. PMID 32805043 DOI: 10.1093/molbev/msaa200 |
0.792 |
|
| 2020 |
Jiang D, Zhang J. Fly wing evolution explained by a neutral model with mutational pleiotropy. Evolution; International Journal of Organic Evolution. PMID 32767382 DOI: 10.1111/Evo.14076 |
0.576 |
|
| 2020 |
Cheon S, Zhang J, Park C. Is phylotranscriptomics as reliable as phylogenomics? Molecular Biology and Evolution. PMID 32658973 DOI: 10.1093/Molbev/Msaa181 |
0.372 |
|
| 2020 |
Liu H, Zhang J. Higher germline mutagenesis of genes with stronger testis expressions refutes the transcriptional scanning hypothesis. Molecular Biology and Evolution. PMID 32638015 DOI: 10.1093/molbev/msaa168 |
0.452 |
|
| 2020 |
Ho WC, Li D, Zhu Q, Zhang J. Phenotypic plasticity as a long-term memory easing readaptations to ancestral environments. Science Advances. 6: eaba3388. PMID 32494748 DOI: 10.1126/sciadv.aba3388 |
0.326 |
|
| 2020 |
Xu C, Zhang J. Mammalian alternative translation initiation is mostly nonadaptive. Molecular Biology and Evolution. PMID 32145028 DOI: 10.1093/molbev/msaa063 |
0.397 |
|
| 2020 |
Chen F, Wu P, Deng S, Zhang H, Hou Y, Hu Z, Zhang J, Chen X, Yang JR. Dissimilation of synonymous codon usage bias in virus-host coevolution due to translational selection. Nature Ecology & Evolution. PMID 32123323 DOI: 10.1038/s41559-020-1124-7 |
0.362 |
|
| 2020 |
Chen P, Zhang J. Antagonistic pleiotropy conceals molecular adaptations in changing environments. Nature Ecology & Evolution. PMID 32042119 DOI: 10.1038/s41559-020-1107-8 |
0.375 |
|
| 2019 |
Zou Z, Zhang H, Guan Y, Zhang J. Deep residual neural networks resolve quartet molecular phylogenies. Molecular Biology and Evolution. PMID 31868908 DOI: 10.1093/Molbev/Msz307 |
0.767 |
|
| 2019 |
Zou Z, Zhang J. Amino acid exchangeabilities vary across the tree of life. Science Advances. 5: eaax3124. PMID 31840062 DOI: 10.1126/sciadv.aax3124 |
0.798 |
|
| 2019 |
Sun M, Zhang J. Allele-specific single-cell RNA sequencing reveals different architectures of intrinsic and extrinsic gene expression noises. Nucleic Acids Research. PMID 31799601 DOI: 10.1093/Nar/Gkz1134 |
0.758 |
|
| 2019 |
Jiang D, Zhang J. The preponderance of nonsynonymous A-to-I RNA editing in coleoids is nonadaptive. Nature Communications. 10: 5411. PMID 31776345 DOI: 10.1038/S41467-019-13275-2 |
0.55 |
|
| 2019 |
Xu H, Liu JJ, Liu Z, Li Y, Jin YS, Zhang J. Synchronization of stochastic expressions drives the clustering of functionally related genes. Science Advances. 5: eaax6525. PMID 31633028 DOI: 10.1126/sciadv.aax6525 |
0.407 |
|
| 2019 |
Sun M, Zhang J. Chromosome-wide co-fluctuation of stochastic gene expression in mammalian cells. Plos Genetics. 15: e1008389. PMID 31525198 DOI: 10.1371/Journal.Pgen.1008389 |
0.798 |
|
| 2019 |
Jiang D, Zhang J. Parallel transcriptomic changes in the origins of divergent monogamous vertebrates? Proceedings of the National Academy of Sciences of the United States of America. PMID 31431541 DOI: 10.1073/Pnas.1910749116 |
0.633 |
|
| 2019 |
Li C, Zhang J. Stop-codon read-through arises largely from molecular errors and is generally nonadaptive. Plos Genetics. 15: e1008141. PMID 31120886 DOI: 10.1371/Journal.Pgen.1008141 |
0.479 |
|
| 2019 |
Liu H, Zhang J. Yeast Spontaneous Mutation Rate and Spectrum Vary with Environment. Current Biology : Cb. PMID 31056389 DOI: 10.1016/j.cub.2019.03.054 |
0.333 |
|
| 2019 |
Wei X, Zhang J. Patterns and Mechanisms of Diminishing Returns from Beneficial Mutations. Molecular Biology and Evolution. PMID 30903691 DOI: 10.1093/molbev/msz035 |
0.349 |
|
| 2019 |
Xu C, Park JK, Zhang J. Evidence that alternative transcriptional initiation is largely nonadaptive. Plos Biology. 17: e3000197. PMID 30883542 DOI: 10.1371/journal.pbio.3000197 |
0.421 |
|
| 2019 |
Ho WC, Zhang J. Genetic gene expression changes during environmental adaptations tend to reverse plastic changes even after the correction for statistical nonindependence. Molecular Biology and Evolution. PMID 30649427 DOI: 10.1093/molbev/msz002 |
0.392 |
|
| 2018 |
Liu H, Maclean CJ, Zhang J. Evolution of the yeast recombination landscape. Molecular Biology and Evolution. PMID 30535029 DOI: 10.1093/molbev/msy233 |
0.396 |
|
| 2018 |
Wei X, Zhang J. The optimal mating distance resulting from heterosis and genetic incompatibility. Science Advances. 4: eaau5518. PMID 30417098 DOI: 10.1126/sciadv.aau5518 |
0.324 |
|
| 2018 |
Guo X, Wang X, Liang B, Di R, Liu Q, Hu W, He X, Zhang J, Zhang X, Chu M. Molecular Cloning of the Gene and Its Single Nucleotide Polymorphisms Association with Litter Size in Small Tail Han Sheep. Animals : An Open Access Journal From Mdpi. 8. PMID 30241280 DOI: 10.3390/ani8100160 |
0.312 |
|
| 2018 |
Moyers BA, Zhang J. Toward reducing phylostratigraphic errors and biases. Genome Biology and Evolution. PMID 30060201 DOI: 10.1093/gbe/evy161 |
0.371 |
|
| 2018 |
Wei X, Zhang J. On the origin of compositional features of ribosomes. Genome Biology and Evolution. PMID 30059996 DOI: 10.1093/gbe/evy169 |
0.326 |
|
| 2018 |
Xu C, Zhang J. Alternative Polyadenylation of Mammalian Transcripts Is Generally Deleterious, Not Adaptive. Cell Systems. PMID 29886108 DOI: 10.1016/j.cels.2018.05.007 |
0.412 |
|
| 2018 |
Vijay N, Park C, Oh J, Jin S, Kern E, Woo Kim H, Zhang J, Park JK. Population genomic analysis reveals contrasting demographic changes of two closely related dolphin species in the last glacial. Molecular Biology and Evolution. PMID 29846663 DOI: 10.1093/Molbev/Msy108 |
0.359 |
|
| 2018 |
Li C, Zhang J. Multi-environment fitness landscapes of a tRNA gene. Nature Ecology & Evolution. PMID 29686238 DOI: 10.1038/S41559-018-0549-8 |
0.514 |
|
| 2018 |
Zhang J. Neutral theory and phenotypic evolution. Molecular Biology and Evolution. PMID 29659993 DOI: 10.1093/molbev/msy065 |
0.369 |
|
| 2018 |
Liu Z, Zhang J. Human C-to-U coding RNA editing is largely nonadaptive. Molecular Biology and Evolution. PMID 29385526 DOI: 10.1093/molbev/msy011 |
0.3 |
|
| 2018 |
Ho WC, Zhang J. Evolutionary adaptations to new environments generally reverse plastic phenotypic changes. Nature Communications. 9: 350. PMID 29367589 DOI: 10.1038/s41467-017-02724-5 |
0.322 |
|
| 2017 |
Liu Z, Zhang J. Most m6A RNA modifications in protein-coding regions are evolutionarily unconserved and likely nonfunctional. Molecular Biology and Evolution. PMID 29228327 DOI: 10.1093/molbev/msx320 |
0.393 |
|
| 2017 |
Wei X, Zhang J. Why phenotype robustness promotes phenotype evolvability. Genome Biology and Evolution. PMID 29228219 DOI: 10.1093/gbe/evx264 |
0.336 |
|
| 2017 |
Ho WC, Ohya Y, Zhang J. Testing the neutral hypothesis of phenotypic evolution. Proceedings of the National Academy of Sciences of the United States of America. PMID 29087947 DOI: 10.1073/pnas.1710351114 |
0.428 |
|
| 2017 |
Yin D, Wang Y, Zhang X, Ma X, He X, Zhang J. Development of chloroplast genome resources for peanut (Arachis hypogaea L.) and other species of Arachis. Scientific Reports. 7: 11649. PMID 28912544 DOI: 10.1038/s41598-017-12026-x |
0.304 |
|
| 2017 |
Moyers BA, Zhang J. Further simulations and analyses demonstrate open problems of phylostratigraphy. Genome Biology and Evolution. PMID 28637261 DOI: 10.1093/gbe/evx109 |
0.452 |
|
| 2017 |
Yang JR, Maclean CJ, Park C, Zhao H, Zhang J. Intra- and inter-specific variations of gene expression levels in yeast are largely neutral. Molecular Biology and Evolution. PMID 28575451 DOI: 10.1093/Molbev/Msx171 |
0.47 |
|
| 2017 |
Maclean CJ, Metzger BPH, Yang JR, Ho WC, Moyers B, Zhang J. Deciphering the genic basis of yeast fitness variation by simultaneous forward and reverse genetics. Molecular Biology and Evolution. PMID 28472365 DOI: 10.1093/molbev/msx151 |
0.401 |
|
| 2017 |
Zou Z, Zhang J. Gene tree discordance does not explain away the temporal decline of convergence in mammalian protein sequence evolution. Molecular Biology and Evolution. PMID 28379570 DOI: 10.1093/molbev/msx109 |
0.822 |
|
| 2016 |
Wei X, Zhang J. The Genomic Architecture of Interactions Between Natural Genetic Polymorphisms and Environments in Yeast Growth. Genetics. PMID 27903611 DOI: 10.1534/genetics.116.195487 |
0.38 |
|
| 2016 |
Chen X, Zhang J. The X to autosome expression ratio in haploid and diploid human embryonic stem cells. Molecular Biology and Evolution. PMID 27593371 DOI: 10.1093/molbev/msw187 |
0.398 |
|
| 2016 |
Zou Z, Zhang J. Morphological and molecular convergences in mammalian phylogenetics. Nature Communications. 7: 12758. PMID 27585543 DOI: 10.1038/ncomms12758 |
0.778 |
|
| 2016 |
Chen X, Zhang J. The Genomic Landscape of Position Effects on Protein Expression Level and Noise in Yeast. Cell Systems. PMID 27185547 DOI: 10.1016/j.cels.2016.03.009 |
0.399 |
|
| 2016 |
Li C, Qian W, Maclean CJ, Zhang J. The fitness landscape of a tRNA gene. Science (New York, N.Y.). PMID 27080104 DOI: 10.1126/Science.Aae0568 |
0.673 |
|
| 2016 |
Klionsky DJ, Abdelmohsen K, Abe A, Abedin MJ, Abeliovich H, Acevedo Arozena A, Adachi H, Adams CM, Adams PD, Adeli K, Adhihetty PJ, Adler SG, Agam G, Agarwal R, Aghi MK, ... Zhang J, ... Zhang J, ... Zhang J, ... Zhang J, ... Zhang JP, et al. Guidelines for the use and interpretation of assays for monitoring autophagy (3rd edition). Autophagy. 12: 1-222. PMID 26799652 DOI: 10.1080/15548627.2015.1100356 |
0.448 |
|
| 2016 |
Moyers BA, Zhang J. Evaluating phylostratigraphic evidence for widespread de novo gene birth in genome evolution. Molecular Biology and Evolution. PMID 26758516 DOI: 10.1093/molbev/msw008 |
0.502 |
|
| 2016 |
Ho WC, Zhang J. Adaptive genetic robustness of Escherichia coli metabolic fluxes. Molecular Biology and Evolution. PMID 26733489 DOI: 10.1093/molbev/msw002 |
0.309 |
|
| 2015 |
Xu J, Zhang J. Are human translated pseudogenes functional? Molecular Biology and Evolution. PMID 26589994 DOI: 10.1093/molbev/msv268 |
0.409 |
|
| 2015 |
Chen X, Yang JR, Zhang J. Nascent RNA folding mitigates transcription-associated mutagenesis. Genome Research. PMID 26518484 DOI: 10.1101/gr.195164.115 |
0.32 |
|
| 2015 |
Chen S, Lei Y, Xu X, Huang J, Jiang H, Wang J, Cheng Z, Zhang J, Song Y, Liao B, Li Y. The Peanut (Arachis hypogaea L.) Gene AhLPAT2 Increases the Lipid Content of Transgenic Arabidopsis Seeds. Plos One. 10: e0136170. PMID 26302041 DOI: 10.1371/journal.pone.0136170 |
0.525 |
|
| 2015 |
Zhang J, Yang JR. Determinants of the rate of protein sequence evolution. Nature Reviews. Genetics. 16: 409-20. PMID 26055156 DOI: 10.1038/nrg3950 |
0.401 |
|
| 2015 |
Wu R, Wu C, Liu D, Yang X, Huang J, Zhang J, Liao B, He H, Li H. Overview of Antioxidant Peptides Derived from Marine Resources: The Sources, Characteristic, Purification, and Evaluation Methods. Applied Biochemistry and Biotechnology. PMID 26041057 DOI: 10.1007/s12010-015-1689-9 |
0.449 |
|
| 2015 |
Zou Z, Zhang J. Are Convergent and Parallel Amino Acid Substitutions in Protein Evolution More Prevalent Than Neutral Expectations? Molecular Biology and Evolution. 32: 2085-96. PMID 25862140 DOI: 10.1093/molbev/msv091 |
0.79 |
|
| 2015 |
Xie LJ, Chen QF, Chen MX, Yu LJ, Huang L, Chen L, Wang FZ, Xia FN, Zhu TR, Wu JX, Yin J, Liao B, Shi J, Zhang JH, Aharoni A, et al. Unsaturation of very-long-chain ceramides protects plant from hypoxia-induced damages by modulating ethylene signaling in Arabidopsis. Plos Genetics. 11: e1005143. PMID 25822663 DOI: 10.1371/Journal.Pgen.1005143 |
0.483 |
|
| 2015 |
Zhang J, Li J, Huang Z, Yang B, Zhang X, Li D, Craik DJ, Baker AJ, Shu W, Liao B. Transcriptomic screening for cyclotides and other cysteine-rich proteins in the metallophyte Viola baoshanensis. Journal of Plant Physiology. 178: 17-26. PMID 25756919 DOI: 10.1016/J.Jplph.2015.01.017 |
0.556 |
|
| 2015 |
Chen X, Zhang J. No X-chromosome dosage compensation in human proteomes. Molecular Biology and Evolution. 32: 1456-60. PMID 25697342 DOI: 10.1093/molbev/msv036 |
0.317 |
|
| 2015 |
Zhao H, Li J, Zhang J. Molecular evidence for the loss of three basic tastes in penguins. Current Biology : Cb. 25: R141-2. PMID 25689905 DOI: 10.1016/j.cub.2015.01.026 |
0.374 |
|
| 2015 |
Zou Z, Zhang J. No genome-wide protein sequence convergence for echolocation. Molecular Biology and Evolution. 32: 1237-41. PMID 25631925 DOI: 10.1093/molbev/msv014 |
0.796 |
|
| 2015 |
Wei X, Zhang J. A simple method for estimating the strength of natural selection on overlapping genes. Genome Biology and Evolution. 7: 381-90. PMID 25552532 DOI: 10.1093/gbe/evu294 |
0.457 |
|
| 2015 |
Xu G, Zhang J. In search of beneficial coding RNA editing. Molecular Biology and Evolution. 32: 536-41. PMID 25392343 DOI: 10.1093/molbev/msu314 |
0.323 |
|
| 2015 |
Moyers BA, Zhang J. Phylostratigraphic bias creates spurious patterns of genome evolution. Molecular Biology and Evolution. 32: 258-67. PMID 25312911 DOI: 10.1093/molbev/msu286 |
0.484 |
|
| 2014 |
Chen X, Zhang J. Yeast mutation accumulation experiment supports elevated mutation rates at highly transcribed sites. Proceedings of the National Academy of Sciences of the United States of America. 111: E4062. PMID 25217566 DOI: 10.1073/pnas.1412284111 |
0.393 |
|
| 2014 |
Yang JR, Ruan S, Zhang J. Determinative developmental cell lineages are robust to cell deaths. Plos Genetics. 10: e1004501. PMID 25058586 DOI: 10.1371/journal.pgen.1004501 |
0.304 |
|
| 2014 |
Yang JR, Chen X, Zhang J. Codon-by-codon modulation of translational speed and accuracy via mRNA folding. Plos Biology. 12: e1001910. PMID 25051069 DOI: 10.1371/journal.pbio.1001910 |
0.341 |
|
| 2014 |
Qian W, Zhang J. Genomic evidence for adaptation by gene duplication. Genome Research. 24: 1356-62. PMID 24904045 DOI: 10.1101/Gr.172098.114 |
0.618 |
|
| 2014 |
Xu J, Zhang J. Why human disease-associated residues appear as the wild-type in other species: genome-scale structural evidence for the compensation hypothesis. Molecular Biology and Evolution. 31: 1787-92. PMID 24723421 DOI: 10.1093/molbev/msu130 |
0.357 |
|
| 2014 |
Ho WC, Zhang J. The genotype-phenotype map of yeast complex traits: basic parameters and the role of natural selection. Molecular Biology and Evolution. 31: 1568-80. PMID 24723420 DOI: 10.1093/molbev/msu131 |
0.444 |
|
| 2014 |
Li D, Zhang J. Diet shapes the evolution of the vertebrate bitter taste receptor gene repertoire. Molecular Biology and Evolution. 31: 303-9. PMID 24202612 DOI: 10.1093/molbev/mst219 |
0.442 |
|
| 2013 |
Chen X, Zhang J. Why are genes encoded on the lagging strand of the bacterial genome? Genome Biology and Evolution. 5: 2436-9. PMID 24273314 DOI: 10.1093/gbe/evt193 |
0.458 |
|
| 2013 |
Li C, Wang Z, Zhang J. Toward genome-wide identification of Bateson-Dobzhansky-Muller incompatibilities in yeast: a simulation study. Genome Biology and Evolution. 5: 1261-72. PMID 23742870 DOI: 10.1093/Gbe/Evt091 |
0.52 |
|
| 2013 |
Chen X, Zhang J. No gene-specific optimization of mutation rate in Escherichia coli. Molecular Biology and Evolution. 30: 1559-62. PMID 23533222 DOI: 10.1093/molbev/mst060 |
0.429 |
|
| 2013 |
Tong ZT, Wei JH, Zhang JX, Liang CZ, Liao B, Lu J, Fan S, Chen ZH, Zhang F, Ma HH, Qian WC, Kong LL, Fang Y, Chen W, Xie D, et al. AIB1 predicts bladder cancer outcome and promotes bladder cancer cell proliferation through AKT and E2F1. British Journal of Cancer. 108: 1470-9. PMID 23511556 DOI: 10.1038/bjc.2013.81 |
0.395 |
|
| 2013 |
Park C, Chen X, Yang JR, Zhang J. Differential requirements for mRNA folding partially explain why highly expressed proteins evolve slowly. Proceedings of the National Academy of Sciences of the United States of America. 110: E678-86. PMID 23382244 DOI: 10.1073/Pnas.1218066110 |
0.403 |
|
| 2012 |
Aad G, Abbott B, Abdallah J, Abdelalim AA, Abdesselam A, Abdinov O, Abi B, Abolins M, Abramowicz H, Abreu H, Acerbi E, Acharya BS, Adams DL, Addy TN, ... ... Zhang J, et al. Search for lepton flavour violation in the eμ continuum with the ATLAS detector in [Formula: see text]pp collisions at the LHC. The European Physical Journal. C, Particles and Fields. 72: 2040. PMID 25814838 DOI: 10.1140/Epjc/S10052-012-2040-Z |
0.372 |
|
| 2012 |
Chen X, Zhang J. The ortholog conjecture is untestable by the current gene ontology but is supported by RNA sequencing data. Plos Computational Biology. 8: e1002784. PMID 23209392 DOI: 10.1371/journal.pcbi.1002784 |
0.492 |
|
| 2012 |
Park C, Qian W, Zhang J. Genomic evidence for elevated mutation rates in highly expressed genes. Embo Reports. 13: 1123-9. PMID 23146897 DOI: 10.1038/Embor.2012.165 |
0.6 |
|
| 2012 |
Qian W, Ma D, Xiao C, Wang Z, Zhang J. The genomic landscape and evolutionary resolution of antagonistic pleiotropy in yeast. Cell Reports. 2: 1399-410. PMID 23103169 DOI: 10.1016/J.Celrep.2012.09.017 |
0.571 |
|
| 2012 |
Zhang J. Genetic redundancies and their evolutionary maintenance. Advances in Experimental Medicine and Biology. 751: 279-300. PMID 22821463 DOI: 10.1007/978-1-4614-3567-9_13 |
0.452 |
|
| 2012 |
Lin F, Xing K, Zhang J, He X. Expression reduction in mammalian X chromosome evolution refutes Ohno's hypothesis of dosage compensation. Proceedings of the National Academy of Sciences of the United States of America. 109: 11752-7. PMID 22753487 DOI: 10.1073/Pnas.1201816109 |
0.718 |
|
| 2012 |
Zhao H, Zhang J. Mismatches between feeding ecology and taste receptor evolution: an inconvenient truth. Proceedings of the National Academy of Sciences of the United States of America. 109: E1464; author reply . PMID 22562799 DOI: 10.1073/pnas.1205205109 |
0.451 |
|
| 2012 |
Qian W, Yang JR, Pearson NM, Maclean C, Zhang J. Balanced codon usage optimizes eukaryotic translational efficiency. Plos Genetics. 8: e1002603. PMID 22479199 DOI: 10.1371/Journal.Pgen.1002603 |
0.506 |
|
| 2012 |
Park C, Zhang J. High expression hampers horizontal gene transfer. Genome Biology and Evolution. 4: 523-32. PMID 22436996 DOI: 10.1093/Gbe/Evs030 |
0.46 |
|
| 2012 |
Yang JR, Liao BY, Zhuang SM, Zhang J. Protein misinteraction avoidance causes highly expressed proteins to evolve slowly. Proceedings of the National Academy of Sciences of the United States of America. 109: E831-40. PMID 22416125 DOI: 10.1073/pnas.1117408109 |
0.584 |
|
| 2012 |
Zhao H, Xu D, Zhang S, Zhang J. Genomic and genetic evidence for the loss of umami taste in bats. Genome Biology and Evolution. 4: 73-9. PMID 22117084 DOI: 10.1093/gbe/evr126 |
0.431 |
|
| 2012 |
Wagner GP, Zhang J. Universal pleiotropy is not a valid null hypothesis: Reply to Hill and Zhang Nature Reviews Genetics. 13: 296. DOI: 10.1038/nrg2949-c2 |
0.364 |
|
| 2011 |
Zhang J. A panorama of mammalian gene expression evolution. Molecular Systems Biology. 7: 552. PMID 22108794 DOI: 10.1038/msb.2011.86 |
0.459 |
|
| 2011 |
Qian W, He X, Chan E, Xu H, Zhang J. Measuring the evolutionary rate of protein-protein interaction. Proceedings of the National Academy of Sciences of the United States of America. 108: 8725-30. PMID 21555556 DOI: 10.1073/Pnas.1104695108 |
0.738 |
|
| 2011 |
Park SH, Podlaha O, Grus WE, Zhang J. The microevolution of V1r vomeronasal receptor genes in mice. Genome Biology and Evolution. 3: 401-12. PMID 21551350 DOI: 10.1093/Gbe/Evr039 |
0.819 |
|
| 2011 |
Wang Z, Zhang J. Impact of gene expression noise on organismal fitness and the efficacy of natural selection. Proceedings of the National Academy of Sciences of the United States of America. 108: E67-76. PMID 21464323 DOI: 10.1073/pnas.1100059108 |
0.353 |
|
| 2011 |
Park C, Zhang J. Genome-wide evolutionary conservation of N-glycosylation sites. Molecular Biology and Evolution. 28: 2351-7. PMID 21355035 DOI: 10.1093/Molbev/Msr055 |
0.307 |
|
| 2011 |
Zhao H, Xu D, Zhang S, Zhang J. Widespread losses of vomeronasal signal transduction in bats. Molecular Biology and Evolution. 28: 7-12. PMID 20693241 DOI: 10.1093/molbev/msq207 |
0.359 |
|
| 2011 |
He X, Chen X, Xiong Y, Chen Z, Wang X, Shi S, Zhang J. He et al. reply Nature Genetics. 43: 1171-1172. DOI: 10.1038/Ng.1010 |
0.595 |
|
| 2010 |
Xiong Y, Chen X, Chen Z, Wang X, Shi S, Wang X, Zhang J, He X. RNA sequencing shows no dosage compensation of the active X-chromosome. Nature Genetics. 42: 1043-7. PMID 21102464 DOI: 10.1038/Ng.711 |
0.671 |
|
| 2010 |
Yang JR, Zhuang SM, Zhang J. Impact of translational error-induced and error-free misfolding on the rate of protein evolution. Molecular Systems Biology. 6: 421. PMID 20959819 DOI: 10.1038/msb.2010.78 |
0.338 |
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| 2010 |
Wang Z, Liao BY, Zhang J. Genomic patterns of pleiotropy and the evolution of complexity. Proceedings of the National Academy of Sciences of the United States of America. 107: 18034-9. PMID 20876104 DOI: 10.1073/pnas.1004666107 |
0.662 |
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| 2010 |
Qian W, Liao BY, Chang AY, Zhang J. Maintenance of duplicate genes and their functional redundancy by reduced expression. Trends in Genetics : Tig. 26: 425-30. PMID 20708291 DOI: 10.1016/J.Tig.2010.07.002 |
0.727 |
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| 2010 |
Zhao H, Yang JR, Xu H, Zhang J. Pseudogenization of the umami taste receptor gene Tas1r1 in the giant panda coincided with its dietary switch to bamboo. Molecular Biology and Evolution. 27: 2669-73. PMID 20573776 DOI: 10.1093/molbev/msq153 |
0.414 |
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| 2010 |
Zhao H, Zhou Y, Pinto CM, Charles-Dominique P, Galindo-González J, Zhang S, Zhang J. Evolution of the sweet taste receptor gene Tas1r2 in bats. Molecular Biology and Evolution. 27: 2642-50. PMID 20558596 DOI: 10.1093/molbev/msq152 |
0.432 |
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| 2010 |
Liao BY, Weng MP, Zhang J. Contrasting genetic paths to morphological and physiological evolution. Proceedings of the National Academy of Sciences of the United States of America. 107: 7353-8. PMID 20368429 DOI: 10.1073/pnas.0910339107 |
0.675 |
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| 2010 |
Liao BY, Weng MP, Zhang J. Impact of extracellularity on the evolutionary rate of mammalian proteins. Genome Biology and Evolution. 2: 39-43. PMID 20333223 DOI: 10.1093/gbe/evp058 |
0.611 |
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| 2010 |
Li Y, Liu Z, Shi P, Zhang J. The hearing gene Prestin unites echolocating bats and whales. Current Biology : Cb. 20: R55-6. PMID 20129037 DOI: 10.1016/j.cub.2009.11.042 |
0.416 |
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| 2010 |
He X, Qian W, Wang Z, Li Y, Zhang J. Prevalent positive epistasis in Escherichia coli and Saccharomyces cerevisiae metabolic networks. Nature Genetics. 42: 272-6. PMID 20101242 DOI: 10.1038/Ng.524 |
0.723 |
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| 2009 |
Qian W, Zhang J. Protein subcellular relocalization in the evolution of yeast singleton and duplicate genes. Genome Biology and Evolution. 1: 198-204. PMID 20333190 DOI: 10.1093/Gbe/Evp021 |
0.653 |
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| 2009 |
Wang Z, Zhang J. Abundant indispensable redundancies in cellular metabolic networks. Genome Biology and Evolution. 1: 23-33. PMID 20333174 DOI: 10.1093/gbe/evp002 |
0.337 |
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| 2009 |
Barkman T, Zhang J. Evidence for escape from adaptive conflict? Nature. 462: E1; discussion E2-3. PMID 20010636 DOI: 10.1038/Nature08663 |
0.466 |
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| 2009 |
Podlaha O, Zhang J. Processed pseudogenes: the 'fossilized footprints' of past gene expression. Trends in Genetics : Tig. 25: 429-34. PMID 19796837 DOI: 10.1016/J.Tig.2009.09.002 |
0.74 |
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| 2009 |
Zhang Z, Qian W, Zhang J. Positive selection for elevated gene expression noise in yeast. Molecular Systems Biology. 5: 299. PMID 19690568 DOI: 10.1038/Msb.2009.58 |
0.568 |
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| 2009 |
Zhang J. Phylogenetic evidence for parallel adaptive origins of digestive RNases in Asian and African leaf monkeys: a response to Xu et al. (2009). Molecular Phylogenetics and Evolution. 53: 608-9; author reply . PMID 19595778 DOI: 10.1016/j.ympev.2009.07.003 |
0.421 |
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| 2009 |
He X, Zhang J. On the growth of scientific knowledge: yeast biology as a case study. Plos Computational Biology. 5: e1000320. PMID 19300476 DOI: 10.1371/Journal.Pcbi.1000320 |
0.637 |
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| 2009 |
Shi P, Zhang J. Extraordinary diversity of chemosensory receptor gene repertoires among vertebrates Results and Problems in Cell Differentiation. 47: 1-23. PMID 19145414 DOI: 10.1007/400_2008_4 |
0.508 |
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| 2009 |
Wang Z, Zhang J. Why is the correlation between gene importance and gene evolutionary rate so weak? Plos Genetics. 5: e1000329. PMID 19132081 DOI: 10.1371/journal.pgen.1000329 |
0.503 |
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| 2009 |
Grus WE, Zhang J. Origin of the genetic components of the vomeronasal system in the common ancestor of all extant vertebrates. Molecular Biology and Evolution. 26: 407-19. PMID 19008528 DOI: 10.1093/molbev/msn262 |
0.808 |
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| 2008 |
Zhang J. Positive selection, not negative selection, in the pseudogenization of rcsA in Yersinia pestis. Proceedings of the National Academy of Sciences of the United States of America. 105: E69; author reply E7. PMID 18922766 DOI: 10.1073/pnas.0806419105 |
0.439 |
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| 2008 |
Qian W, Zhang J. Gene dosage and gene duplicability. Genetics. 179: 2319-24. PMID 18689880 DOI: 10.1534/Genetics.108.090936 |
0.65 |
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| 2008 |
Grus WE, Zhang J. Distinct evolutionary patterns between chemoreceptors of 2 vertebrate olfactory systems and the differential tuning hypothesis. Molecular Biology and Evolution. 25: 1593-601. PMID 18460446 DOI: 10.1093/molbev/msn107 |
0.781 |
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| 2008 |
Liao BY, Zhang J. Null mutations in human and mouse orthologs frequently result in different phenotypes. Proceedings of the National Academy of Sciences of the United States of America. 105: 6987-92. PMID 18458337 DOI: 10.1073/Pnas.0800387105 |
0.697 |
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| 2008 |
Liao BY, Zhang J. Coexpression of linked genes in Mammalian genomes is generally disadvantageous. Molecular Biology and Evolution. 25: 1555-65. PMID 18440951 DOI: 10.1093/Molbev/Msn101 |
0.677 |
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| 2008 |
Zhang Z, Zhang J. Accuracy and application of the motif expression decomposition method in dissecting transcriptional regulation. Nucleic Acids Research. 36: 3185-93. PMID 18411204 DOI: 10.1093/nar/gkn127 |
0.358 |
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| 2008 |
Qian W, Zhang J. Evolutionary dynamics of nematode operons: easy come, slow go. Genome Research. 18: 412-21. PMID 18218978 DOI: 10.1101/Gr.7112608 |
0.607 |
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| 2007 |
Zhang J. The drifting human genome. Proceedings of the National Academy of Sciences of the United States of America. 104: 20147-8. PMID 18093959 DOI: 10.1073/pnas.0710524105 |
0.446 |
|
| 2007 |
Cho S, Huang ZY, Zhang J. Sex-specific splicing of the honeybee doublesex gene reveals 300 million years of evolution at the bottom of the insect sex-determination pathway. Genetics. 177: 1733-41. PMID 17947419 DOI: 10.1534/Genetics.107.078980 |
0.352 |
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| 2007 |
Grus WE, Shi P, Zhang J. Largest vertebrate vomeronasal type 1 receptor gene repertoire in the semiaquatic platypus. Molecular Biology and Evolution. 24: 2153-7. PMID 17666439 DOI: 10.1093/molbev/msm157 |
0.799 |
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| 2007 |
Wang X, Zhang J. Rapid evolution of primate ESX1, an X-linked placenta- and testis-expressed homeobox gene. Human Molecular Genetics. 16: 2053-60. PMID 17588961 DOI: 10.1093/hmg/ddm153 |
0.436 |
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| 2007 |
Liao BY, Zhang J. Mouse duplicate genes are as essential as singletons. Trends in Genetics : Tig. 23: 378-81. PMID 17559966 DOI: 10.1016/j.tig.2007.05.006 |
0.657 |
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| 2007 |
Bakewell MA, Shi P, Zhang J. More genes underwent positive selection in chimpanzee evolution than in human evolution. Proceedings of the National Academy of Sciences of the United States of America. 104: 7489-94. PMID 17449636 DOI: 10.1073/Pnas.0701705104 |
0.802 |
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| 2007 |
Cho S, Zhang J. Zebrafish ribonucleases are bactericidal: implications for the origin of the vertebrate RNase A superfamily. Molecular Biology and Evolution. 24: 1259-68. PMID 17347156 DOI: 10.1093/molbev/msm047 |
0.357 |
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| 2007 |
Shi P, Zhang J. Comparative genomic analysis identifies an evolutionary shift of vomeronasal receptor gene repertoires in the vertebrate transition from water to land. Genome Research. 17: 166-74. PMID 17210926 DOI: 10.1101/gr.6040007 |
0.481 |
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| 2007 |
Zhang J. Disulfide-bond reshuffling in the evolution of an ape placental ribonuclease. Molecular Biology and Evolution. 24: 505-12. PMID 17116644 DOI: 10.1093/molbev/msl177 |
0.309 |
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| 2006 |
Cho S, Huang ZY, Green DR, Smith DR, Zhang J. Evolution of the complementary sex-determination gene of honey bees: balancing selection and trans-species polymorphisms. Genome Research. 16: 1366-75. PMID 17065615 DOI: 10.1101/Gr.4695306 |
0.418 |
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| 2006 |
Shi P, Bakewell MA, Zhang J. Did brain-specific genes evolve faster in humans than in chimpanzees? Trends in Genetics : Tig. 22: 608-13. PMID 16978728 DOI: 10.1016/J.Tig.2006.09.001 |
0.79 |
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| 2006 |
Liao BY, Scott NM, Zhang J. Impacts of gene essentiality, expression pattern, and gene compactness on the evolutionary rate of mammalian proteins. Molecular Biology and Evolution. 23: 2072-80. PMID 16887903 DOI: 10.1093/Molbev/Msm043 |
0.69 |
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| 2006 |
Podlaha O, Webb DM, Zhang J. Accelerated evolution and loss of a domain of the sperm-egg-binding protein SED1 in ancestral primates. Molecular Biology and Evolution. 23: 1828-31. PMID 16864605 DOI: 10.1093/Molbev/Msl066 |
0.684 |
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| 2006 |
Grus WE, Zhang J. Origin and evolution of the vertebrate vomeronasal system viewed through system-specific genes. Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology. 28: 709-18. PMID 16850401 DOI: 10.1002/bies.20432 |
0.818 |
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| 2006 |
Zhang J. Parallel adaptive origins of digestive RNases in Asian and African leaf monkeys. Nature Genetics. 38: 819-23. PMID 16767103 DOI: 10.1038/ng1812 |
0.447 |
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| 2006 |
He X, Zhang J. Why do hubs tend to be essential in protein networks? Plos Genetics. 2: e88. PMID 16751849 DOI: 10.1371/Journal.Pgen.0020088 |
0.666 |
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| 2006 |
He X, Zhang J. Toward a molecular understanding of pleiotropy. Genetics. 173: 1885-91. PMID 16702416 DOI: 10.1534/Genetics.106.060269 |
0.751 |
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| 2006 |
Wang X, Zhang J. Remarkable expansions of an X-linked reproductive homeobox gene cluster in rodent evolution. Genomics. 88: 34-43. PMID 16574372 DOI: 10.1016/j.ygeno.2006.02.007 |
0.426 |
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| 2006 |
Cho S, Zhang J. Ancient expansion of the ribonuclease A superfamily revealed by genomic analysis of placental and marsupial mammals. Gene. 373: 116-25. PMID 16530354 DOI: 10.1016/j.gene.2006.01.018 |
0.515 |
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| 2006 |
Liao BY, Zhang J. Low rates of expression profile divergence in highly expressed genes and tissue-specific genes during mammalian evolution. Molecular Biology and Evolution. 23: 1119-28. PMID 16520335 DOI: 10.1093/molbev/msj119 |
0.669 |
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| 2006 |
Wang X, Grus WE, Zhang J. Gene losses during human origins. Plos Biology. 4: e52. PMID 16464126 DOI: 10.1371/journal.pbio.0040052 |
0.819 |
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| 2006 |
He X, Zhang J. Transcriptional reprogramming and backup between duplicate genes: is it a genomewide phenomenon? Genetics. 172: 1363-7. PMID 16322517 DOI: 10.1534/Genetics.105.049890 |
0.744 |
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| 2006 |
Liao BY, Zhang J. Evolutionary conservation of expression profiles between human and mouse orthologous genes. Molecular Biology and Evolution. 23: 530-40. PMID 16280543 DOI: 10.1093/molbev/msj054 |
0.664 |
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| 2006 |
Shi P, Zhang J. Contrasting modes of evolution between vertebrate sweet/umami receptor genes and bitter receptor genes. Molecular Biology and Evolution. 23: 292-300. PMID 16207936 DOI: 10.1093/molbev/msj028 |
0.518 |
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| 2006 |
He X, Zhang J. Higher duplicability of less important genes in yeast genomes. Molecular Biology and Evolution. 23: 144-51. PMID 16151181 DOI: 10.1093/Molbev/Msj015 |
0.734 |
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| 2005 |
Zhang J, Nielsen R, Yang Z. Evaluation of an improved branch-site likelihood method for detecting positive selection at the molecular level. Molecular Biology and Evolution. 22: 2472-9. PMID 16107592 DOI: 10.1093/Molbev/Msi237 |
0.302 |
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| 2005 |
Yang H, Shi P, Zhang YP, Zhang J. Composition and evolution of the V2r vomeronasal receptor gene repertoire in mice and rats. Genomics. 86: 306-15. PMID 16024217 DOI: 10.1016/j.ygeno.2005.05.012 |
0.459 |
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| 2005 |
He X, Zhang J. Gene complexity and gene duplicability. Current Biology : Cb. 15: 1016-21. PMID 15936271 DOI: 10.1016/J.Cub.2005.04.035 |
0.741 |
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| 2005 |
Podlaha O, Webb DM, Tucker PK, Zhang J. Positive selection for indel substitutions in the rodent sperm protein catsper1. Molecular Biology and Evolution. 22: 1845-52. PMID 15930155 DOI: 10.1093/Molbev/Msi178 |
0.71 |
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| 2005 |
Grus WE, Shi P, Zhang YP, Zhang J. Dramatic variation of the vomeronasal pheromone receptor gene repertoire among five orders of placental and marsupial mammals. Proceedings of the National Academy of Sciences of the United States of America. 102: 5767-72. PMID 15790682 DOI: 10.1073/pnas.0501589102 |
0.831 |
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| 2005 |
Zhang J, He X. Significant impact of protein dispensability on the instantaneous rate of protein evolution. Molecular Biology and Evolution. 22: 1147-55. PMID 15689524 DOI: 10.1093/Molbev/Msi101 |
0.737 |
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| 2005 |
Cho S, Beintema JJ, Zhang J. The ribonuclease A superfamily of mammals and birds: identifying new members and tracing evolutionary histories. Genomics. 85: 208-20. PMID 15676279 DOI: 10.1016/J.Ygeno.2004.10.008 |
0.515 |
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| 2005 |
He X, Zhang J. Rapid subfunctionalization accompanied by prolonged and substantial neofunctionalization in duplicate gene evolution. Genetics. 169: 1157-64. PMID 15654095 DOI: 10.1534/Genetics.104.037051 |
0.747 |
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| 2005 |
Webb DM, Zhang J. FoxP2 in song-learning birds and vocal-learning mammals Journal of Heredity. 96: 212-216. PMID 15618302 DOI: 10.1093/jhered/esi025 |
0.303 |
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| 2005 |
Zhang J. On the evolution of codon volatility. Genetics. 169: 495-501. PMID 15466418 DOI: 10.1534/genetics.104.034884 |
0.404 |
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| 2005 |
Zhang J. EVOLUTION FOR BIOINFORMATICIANS AND BIOINFORMATICS FOR EVOLUTIONISTS Evolution. 59: 2281-2283. DOI: 10.1111/J.0014-3820.2005.TB00937.X |
0.357 |
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| 2004 |
Dyer KD, Rosenberg HF, Zhang J. Isolation, characterization, and evolutionary divergence of mouse RNase 6: evidence for unusual evolution in rodents. Journal of Molecular Evolution. 59: 657-65. PMID 15693621 DOI: 10.1007/S00239-004-2657-0 |
0.466 |
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| 2004 |
Grus WE, Zhang J. Rapid turnover and species-specificity of vomeronasal pheromone receptor genes in mice and rats. Gene. 340: 303-12. PMID 15475172 DOI: 10.1016/j.gene.2004.07.037 |
0.82 |
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| 2004 |
Wang X, Thomas SD, Zhang J. Relaxation of selective constraint and loss of function in the evolution of human bitter taste receptor genes. Human Molecular Genetics. 13: 2671-8. PMID 15367488 DOI: 10.1093/hmg/ddh289 |
0.423 |
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| 2004 |
Podlaha O, Zhang J. Nonneutral evolution of the transcribed pseudogene Makorin1-p1 in mice. Molecular Biology and Evolution. 21: 2202-9. PMID 15306660 DOI: 10.1093/Molbev/Msh230 |
0.717 |
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| 2004 |
Wang X, Zhang J. Rapid evolution of mammalian X-linked testis-expressed homeobox genes. Genetics. 167: 879-88. PMID 15238536 DOI: 10.1534/genetics.103.025072 |
0.478 |
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| 2004 |
Zhang J, Webb DM. Rapid evolution of primate antiviral enzyme APOBEC3G. Human Molecular Genetics. 13: 1785-91. PMID 15198990 DOI: 10.1093/hmg/ddh183 |
0.313 |
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| 2004 |
Zhang J. Evolution of DMY, a newly emergent male sex-determination gene of medaka fish. Genetics. 166: 1887-95. PMID 15126406 DOI: 10.1534/Genetics.166.4.1887 |
0.433 |
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| 2004 |
Zhang J, Wang X, Podlaha O. Testing the chromosomal speciation hypothesis for humans and chimpanzees. Genome Research. 14: 845-51. PMID 15123584 DOI: 10.1101/Gr.1891104 |
0.706 |
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| 2004 |
Zhang J. Frequent false detection of positive selection by the likelihood method with branch-site models. Molecular Biology and Evolution. 21: 1332-9. PMID 15014150 DOI: 10.1093/molbev/msh117 |
0.355 |
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| 2004 |
Webb DM, Cortés-Ortiz L, Zhang J. Genetic evidence for the coexistence of pheromone perception and full trichromatic vision in howler monkeys. Molecular Biology and Evolution. 21: 697-704. PMID 14963105 DOI: 10.1093/molbev/msh068 |
0.423 |
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| 2004 |
Zhang J. The infancy of duplicate genes Heredity. 92: 479-480. DOI: 10.1038/Sj.Hdy.6800446 |
0.513 |
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| 2003 |
Zhang J. Evolution of the human ASPM gene, a major determinant of brain size. Genetics. 165: 2063-70. PMID 14704186 |
0.303 |
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| 2003 |
Fournier PE, Dumler JS, Greub G, Zhang J, Wu Y, Raoult D. Gene sequence-based criteria for identification of new rickettsia isolates and description of Rickettsia heilongjiangensis sp. nov. Journal of Clinical Microbiology. 41: 5456-65. PMID 14662925 DOI: 10.1128/Jcm.41.12.5456-5465.2003 |
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| 2003 |
Gao L, Zhang J. Why are some human disease-associated mutations fixed in mice? Trends in Genetics : Tig. 19: 678-81. PMID 14642745 DOI: 10.1016/j.tig.2003.10.002 |
0.305 |
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| 2003 |
Podlaha O, Zhang J. Positive selection on protein-length in the evolution of a primate sperm ion channel. Proceedings of the National Academy of Sciences of the United States of America. 100: 12241-6. PMID 14523237 DOI: 10.1073/Pnas.2033555100 |
0.698 |
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| 2003 |
Zhang J, Webb DM. Evolutionary deterioration of the vomeronasal pheromone transduction pathway in catarrhine primates. Proceedings of the National Academy of Sciences of the United States of America. 100: 8337-41. PMID 12826614 DOI: 10.1073/pnas.1331721100 |
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| 2003 |
Zhang J. Parallel functional changes in the digestive RNases of ruminants and colobines by divergent amino acid substitutions. Molecular Biology and Evolution. 20: 1310-7. PMID 12777504 DOI: 10.1093/molbev/msg143 |
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| 2003 |
Zhang J, Zhang YP. Pseudogenization of the tumor-growth promoter angiogenin in a leaf-eating monkey. Gene. 308: 95-101. PMID 12711394 DOI: 10.1016/S0378-1119(03)00470-0 |
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| 2003 |
Shi P, Zhang J, Yang H, Zhang YP. Adaptive diversification of bitter taste receptor genes in Mammalian evolution. Molecular Biology and Evolution. 20: 805-14. PMID 12679530 DOI: 10.1093/MOLBEV/MSG083 |
0.509 |
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| 2003 |
Zhang J, Dyer KD, Rosenberg HF. Human RNase 7: a new cationic ribonuclease of the RNase A superfamily. Nucleic Acids Research. 31: 602-7. PMID 12527768 DOI: 10.1093/Nar/Gkg157 |
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| 2003 |
Zhang J. Evolution by gene duplication: an update Trends in Ecology & Evolution. 18: 292-298. DOI: 10.1016/S0169-5347(03)00033-8 |
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| 2002 |
Zhang J, Webb DM, Podlaha O. Accelerated protein evolution and origins of human-specific features: Foxp2 as an example. Genetics. 162: 1825-35. PMID 12524352 |
0.712 |
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| 2002 |
Zhang J, Zhang YP, Rosenberg HF. Adaptive evolution of a duplicated pancreatic ribonuclease gene in a leaf-eating monkey. Nature Genetics. 30: 411-5. PMID 11925567 DOI: 10.1038/Ng852 |
0.51 |
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| 2002 |
Zhang J, Rosenberg HF. Diversifying selection of the tumor-growth promoter angiogenin in primate evolution. Molecular Biology and Evolution. 19: 438-45. PMID 11919285 DOI: 10.1093/Oxfordjournals.Molbev.A004099 |
0.425 |
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| 2002 |
Zhang J, Rosenberg HF. Complementary advantageous substitutions in the evolution of an antiviral RNase of higher primates. Proceedings of the National Academy of Sciences of the United States of America. 99: 5486-91. PMID 11917138 DOI: 10.1073/Pnas.072626199 |
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| 2002 |
Zhang J, Dyer KD, Rosenberg HF. RNase 8, a novel RNase A superfamily ribonuclease expressed uniquely in placenta. Nucleic Acids Research. 30: 1169-75. PMID 11861908 DOI: 10.1093/Nar/30.5.1169 |
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| 2001 |
Rosenberg HF, Zhang J, Liao YD, Dyer KD. Rapid diversification of RNase A superfamily ribonucleases from the bullfrog, Rana catesbeiana. Journal of Molecular Evolution. 53: 31-8. PMID 11683320 DOI: 10.1007/S002390010188 |
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| 2000 |
Zhang J, Nei M. Positive selection in the evolution of mammalian interleukin-2 genes. Molecular Biology and Evolution. 17: 1413-6. PMID 10958857 DOI: 10.1093/Oxfordjournals.Molbev.A026425 |
0.619 |
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| 2000 |
Wang W, Zhang J, Alvarez C, Llopart A, Long M. The origin of the Jingwei gene and the complex modular structure of its parental gene, yellow emperor, in Drosophila melanogaster. Molecular Biology and Evolution. 17: 1294-301. PMID 10958846 DOI: 10.1093/Oxfordjournals.Molbev.A026413 |
0.391 |
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| 2000 |
Zhang J, Dyer KD, Rosenberg HF. Evolution of the rodent eosinophil-associated RNase gene family by rapid gene sorting and positive selection. Proceedings of the National Academy of Sciences of the United States of America. 97: 4701-6. PMID 10758160 DOI: 10.1073/Pnas.080071397 |
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| 2000 |
Rooney AP, Zhang J, Nei M. An unusual form of purifying selection in a sperm protein. Molecular Biology and Evolution. 17: 278-83. PMID 10677850 DOI: 10.1093/Oxfordjournals.Molbev.A026307 |
0.621 |
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| 2000 |
Zhang J. Rates of conservative and radical nonsynonymous nucleotide substitutions in mammalian nuclear genes. Journal of Molecular Evolution. 50: 56-68. PMID 10654260 DOI: 10.1007/s002399910007 |
0.351 |
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| 1999 |
Singhania NA, Dyer KD, Zhang J, Deming MS, Bonville CA, Domachowske JB, Rosenberg HF. Rapid evolution of the ribonuclease A superfamily: adaptive expansion of independent gene clusters in rats and mice. Journal of Molecular Evolution. 49: 721-8. PMID 10594173 DOI: 10.1007/Pl00006594 |
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| 1999 |
Zhang J. Performance of likelihood ratio tests of evolutionary hypotheses under inadequate substitution models. Molecular Biology and Evolution. 16: 868-875. PMID 10368963 DOI: 10.1093/Oxfordjournals.Molbev.A026171 |
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| 1999 |
Rooney AP, Zhang J. Rapid evolution of a primate sperm protein: relaxation of functional constraint or positive Darwinian selection? Molecular Biology and Evolution. 16: 706-10. PMID 10335662 DOI: 10.1093/OXFORDJOURNALS.MOLBEV.A026153 |
0.376 |
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| 1998 |
Nei M, Zhang J. Molecular origin of species. Science (New York, N.Y.). 282: 1428-9. PMID 9867649 DOI: 10.1126/Science.282.5393.1428 |
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| 1998 |
Brown JR, Zhang J, Hodgson JE. A bacterial antibiotic resistance gene with eukaryotic origins. Current Biology : Cb. 8: R365-7. PMID 9635179 DOI: 10.1016/S0960-9822(98)70238-6 |
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| 1998 |
Zhang J, Rosenberg HF, Nei M. Positive Darwinian selection after gene duplication in primate ribonuclease genes. Proceedings of the National Academy of Sciences of the United States of America. 95: 3708-13. PMID 9520431 DOI: 10.1073/Pnas.95.7.3708 |
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| 1997 |
Zhang J, Kumar S, Nei M. Small-sample tests of episodic adaptive evolution: a case study of primate lysozymes. Molecular Biology and Evolution. 14: 1335-8. PMID 9402743 DOI: 10.1093/Oxfordjournals.Molbev.A025743 |
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| 1997 |
Nei M, Zhang J, Yokoyama S. Color vision of ancestral organisms of higher primates. Molecular Biology and Evolution. 14: 611-8. PMID 9190062 DOI: 10.1093/Oxfordjournals.Molbev.A025800 |
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| 1997 |
Zhang J, Kumar S. Detection of convergent and parallel evolution at the amino acid sequence level. Molecular Biology and Evolution. 14: 527-36. PMID 9159930 DOI: 10.1093/OXFORDJOURNALS.MOLBEV.A025789 |
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| 1997 |
Zhang J, Nei M. Accuracies of ancestral amino acid sequences inferred by the parsimony, likelihood, and distance methods. Journal of Molecular Evolution. 44: S139-46. PMID 9071022 DOI: 10.1007/PL00000067 |
0.535 |
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| 1996 |
Zhang J, Nei M. Evolution of Antennapedia-class homeobox genes. Genetics. 142: 295-303. PMID 8770606 |
0.56 |
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| 1988 |
Kay MA, Zhang JY, Jacobs-Lorena M. Identification and germline transformation of the ribosomal protein rp21 gene of Drosophila: Complementation analysis with the Minute QIII locus reveals nonidentity Mgg Molecular & General Genetics. 213: 354-358. PMID 3185506 DOI: 10.1007/Bf00339602 |
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