| Year |
Citation |
Score |
| 2024 |
Sánchez P, Coutinho FH, Sebastián M, Pernice MC, Rodríguez-Martínez R, Salazar G, Cornejo-Castillo FM, Pesant S, López-Alforja X, López-García EM, Agustí S, Gojobori T, Logares R, Sala MM, Vaqué D, et al. Marine picoplankton metagenomes and MAGs from eleven vertical profiles obtained by the Malaspina Expedition. Scientific Data. 11: 154. PMID 38302528 DOI: 10.1038/s41597-024-02974-1 |
0.428 |
|
| 2023 |
Sanz-Sáez I, Sánchez P, Salazar G, Sunagawa S, de Vargas C, Bowler C, Sullivan MB, Wincker P, Karsenti E, Pedrós-Alió C, Agustí S, Gojobori T, Duarte CM, Gasol JM, Sánchez O, et al. Top abundant deep ocean heterotrophic bacteria can be retrieved by cultivation. Isme Communications. 3: 92. PMID 37660234 DOI: 10.1038/s43705-023-00290-0 |
0.357 |
|
| 2022 |
Duarte CM, Ketcheson DI, Eguíluz VM, Agustí S, Fernández-Gracia J, Jamil T, Laiolo E, Gojobori T, Alam I. Rapid evolution of SARS-CoV-2 challenges human defenses. Scientific Reports. 12: 6457. PMID 35440671 DOI: 10.1038/s41598-022-10097-z |
0.381 |
|
| 2022 |
Behzad H, Ohyanagi H, Alharbi B, Ibarra M, Alarawi M, Saito Y, Duarte CM, Bajic V, Mineta K, Gojobori T. A cautionary signal from the Red Sea on the impact of increased dust activity on marine microbiota. Bmc Genomics. 23: 277. PMID 35392799 DOI: 10.1186/s12864-022-08485-w |
0.301 |
|
| 2021 |
Alam I, Kamau AA, Ngugi DK, Gojobori T, Duarte CM, Bajic VB. Publisher Correction: KAUST Metagenomic Analysis Platform (KMAP), enabling access to massive analytics of re-annotated metagenomic data. Scientific Reports. 11: 13992. PMID 34211073 DOI: 10.1038/s41598-021-93386-3 |
0.344 |
|
| 2021 |
Duarte CM, Jamil T, Gojobori T, Alam I. Detection of SARS-CoV-2 variants requires urgent global coordination. International Journal of Infectious Diseases : Ijid : Official Publication of the International Society For Infectious Diseases. PMID 34147667 DOI: 10.1016/j.ijid.2021.06.027 |
0.349 |
|
| 2021 |
Alam I, Kamau AA, Ngugi DK, Gojobori T, Duarte CM, Bajic VB. KAUST Metagenomic Analysis Platform (KMAP), enabling access to massive analytics of re-annotated metagenomic data. Scientific Reports. 11: 11511. PMID 34075103 DOI: 10.1038/s41598-021-90799-y |
0.455 |
|
| 2021 |
Acinas SG, Sánchez P, Salazar G, Cornejo-Castillo FM, Sebastián M, Logares R, Royo-Llonch M, Paoli L, Sunagawa S, Hingamp P, Ogata H, Lima-Mendez G, Roux S, González JM, Arrieta JM, ... ... Gojobori T, et al. Deep ocean metagenomes provide insight into the metabolic architecture of bathypelagic microbial communities. Communications Biology. 4: 604. PMID 34021239 DOI: 10.1038/s42003-021-02112-2 |
0.359 |
|
| 2020 |
Alam I, Kamau AA, Kulmanov M, Jaremko Ł, Arold ST, Pain A, Gojobori T, Duarte CM. Functional Pangenome Analysis Shows Key Features of E Protein Are Preserved in SARS and SARS-CoV-2. Frontiers in Cellular and Infection Microbiology. 10: 405. PMID 32850499 DOI: 10.3389/Fcimb.2020.00405 |
0.364 |
|
| 2020 |
Duarte CM, Ngugi DK, Alam I, Pearman J, Kamau A, Eguiluz VM, Gojobori T, Acinas SG, Gasol JM, Bajic V, Irigoien X. Sequencing Effort Dictates Gene Discovery in Marine Microbial Metagenomes. Environmental Microbiology. PMID 32743860 DOI: 10.1111/1462-2920.15182 |
0.455 |
|
| 2019 |
Sanada T, Tsukiyama-Kohara K, Shin-I T, Yamamoto N, Kayesh MEH, Yamane D, Takano JI, Shiogama Y, Yasutomi Y, Ikeo K, Gojobori T, Mizokami M, Kohara M. Construction of complete Tupaia belangeri transcriptome database by whole-genome and comprehensive RNA sequencing. Scientific Reports. 9: 12372. PMID 31451757 DOI: 10.1038/s41598-019-48867-x |
0.304 |
|
| 2017 |
Nakagawa S, Niimura Y, Gojobori T. Comparative genomic analysis of translation initiation mechanisms for genes lacking the Shine-Dalgarno sequence in prokaryotes. Nucleic Acids Research. PMID 28334743 DOI: 10.1093/nar/gkx124 |
0.311 |
|
| 2013 |
Nakamura Y, Sasaki N, Kobayashi M, Ojima N, Yasuike M, Shigenobu Y, Satomi M, Fukuma Y, Shiwaku K, Tsujimoto A, Kobayashi T, Nakayama I, Ito F, Nakajima K, Sano M, ... ... Gojobori T, et al. The first symbiont-free genome sequence of marine red alga, Susabi-nori (Pyropia yezoensis). Plos One. 8: e57122. PMID 23536760 DOI: 10.1371/journal.pone.0057122 |
0.315 |
|
| 2013 |
Nakagawa S, Bai H, Sakurai T, Nakaya Y, Konno T, Miyazawa T, Gojobori T, Imakawa K. Dynamic evolution of endogenous retrovirus-derived genes expressed in bovine conceptuses during the period of placentation. Genome Biology and Evolution. 5: 296-306. PMID 23335121 DOI: 10.1093/gbe/evt007 |
0.301 |
|
| 2012 |
Tomita Y, Ikeo K, Tamakawa H, Gojobori T, Ikushima S. Genome and transcriptome analysis of the food-yeast Candida utilis. Plos One. 7: e37226. PMID 22629373 DOI: 10.1371/journal.pone.0037226 |
0.31 |
|
| 2010 |
Ezawa K, Ikeo K, Gojobori T, Saitou N. Evolutionary pattern of gene homogenization between primate-specific paralogs after human and macaque speciation using the 4-2-4 method. Molecular Biology and Evolution. 27: 2152-71. PMID 20430861 DOI: 10.1093/molbev/msq109 |
0.304 |
|
| 2009 |
Suzuki H, Forrest AR, van Nimwegen E, Daub CO, Balwierz PJ, Irvine KM, Lassmann T, Ravasi T, Hasegawa Y, de Hoon MJ, Katayama S, Schroder K, Carninci P, Tomaru Y, ... ... Gojobori T, et al. The transcriptional network that controls growth arrest and differentiation in a human myeloid leukemia cell line. Nature Genetics. 41: 553-62. PMID 19377474 DOI: 10.1038/Ng.375 |
0.437 |
|
| 2008 |
Tanaka T, Antonio BA, Kikuchi S, Matsumoto T, Nagamura Y, Numa H, Sakai H, Wu J, Itoh T, Sasaki T, Aono R, Fujii Y, Habara T, Harada E, ... ... Gojobori T, et al. The Rice Annotation Project Database (RAP-DB): 2008 update. Nucleic Acids Research. 36: D1028-33. PMID 18089549 DOI: 10.1093/Nar/Gkm978 |
0.312 |
|
| 2008 |
Yamasaki C, Murakami K, Fujii Y, Sato Y, Harada E, Takeda J, Taniya T, Sakate R, Kikugawa S, Shimada M, Tanino M, Koyanagi KO, Barrero RA, Gough C, ... ... Gojobori T, et al. The H-Invitational Database (H-InvDB), a comprehensive annotation resource for human genes and transcripts. Nucleic Acids Research. 36: D793-9. PMID 18089548 DOI: 10.1093/Nar/Gkm999 |
0.313 |
|
| 2008 |
Nakagawa S, Niimura Y, Gojobori T, Tanaka H, Miura K. Diversity of preferred nucleotide sequences around the translation initiation codon in eukaryote genomes. Nucleic Acids Research. 36: 861-71. PMID 18086709 DOI: 10.1093/nar/gkm1102 |
0.302 |
|
| 2008 |
Matsuya A, Sakate R, Kawahara Y, Koyanagi KO, Sato Y, Fujii Y, Yamasaki C, Habara T, Nakaoka H, Todokoro F, Yamaguchi K, Endo T, Oota S, Makalowski W, Ikeo K, ... ... Gojobori T, et al. Evola: Ortholog database of all human genes in H-InvDB with manual curation of phylogenetic trees. Nucleic Acids Research. 36: D787-92. PMID 17982176 DOI: 10.1093/nar/gkm878 |
0.317 |
|
| 2007 |
Sakate R, Suto Y, Imanishi T, Tanoue T, Hida M, Hayasaka I, Kusuda J, Gojobori T, Hashimoto K, Hirai M. Mapping of chimpanzee full-length cDNAs onto the human genome unveils large potential divergence of the transcriptome. Gene. 399: 1-10. PMID 17574350 DOI: 10.1016/j.gene.2007.04.013 |
0.329 |
|
| 2007 |
Itoh T, Tanaka T, Barrero RA, Yamasaki C, Fujii Y, Hilton PB, Antonio BA, Aono H, Apweiler R, Bruskiewich R, Bureau T, Burr F, Costa de Oliveira A, Fuks G, ... ... Gojobori T, et al. Curated genome annotation of Oryza sativa ssp. japonica and comparative genome analysis with Arabidopsis thaliana. Genome Research. 17: 175-83. PMID 17210932 DOI: 10.1101/Gr.5509507 |
0.354 |
|
| 2007 |
Sugawara H, Abe T, Gojobori T, Tateno Y. DDBJ working on evaluation and classification of bacterial genes in INSDC. Nucleic Acids Research. 35: D13-5. PMID 17108353 DOI: 10.1093/nar/gkl908 |
0.311 |
|
| 2006 |
Kosuge T, Abe T, Okido T, Tanaka N, Hirahata M, Maruyama Y, Mashima J, Tomiki A, Kurokawa M, Himeno R, Fukuchi S, Miyazaki S, Gojobori T, Tateno Y, Sugawara H. Exploration and grading of possible genes from 183 bacterial strains by a common protocol to identification of new genes: Gene Trek in Prokaryote Space (GTPS). Dna Research : An International Journal For Rapid Publication of Reports On Genes and Genomes. 13: 245-54. PMID 17166861 DOI: 10.1093/dnares/dsl014 |
0.326 |
|
| 2006 |
Takeda JI, Suzuki Y, Nakao M, Barrero RA, Koyanagi KO, Jin L, Motono C, Hata H, Isogai T, Nagai K, Otsuki T, Kuryshev V, Shionyu M, Yura K, Go M, ... ... Gojobori T, et al. Large-scale identification and characterization of alternative splicing variants of human gene transcripts using 56 419 completely sequenced and manually annotated full-length cDNAs Nucleic Acids Research. 34: 3917-3928. PMID 16914452 DOI: 10.1093/nar/gkl507 |
0.36 |
|
| 2005 |
Carninci P, Kasukawa T, Katayama S, Gough J, Frith MC, Maeda N, Oyama R, Ravasi T, Lenhard B, Wells C, Kodzius R, Shimokawa K, Bajic VB, Brenner SE, Batalov S, ... ... Gojobori T, et al. The transcriptional landscape of the mammalian genome. Science (New York, N.Y.). 309: 1559-63. PMID 16141072 DOI: 10.1126/Science.1112014 |
0.475 |
|
| 2005 |
Koyanagi KO, Hagiwara M, Itoh T, Gojobori T, Imanishi T. Comparative genomics of bidirectional gene pairs and its implications for the evolution of a transcriptional regulation system. Gene. 353: 169-76. PMID 15944140 DOI: 10.1016/j.gene.2005.04.027 |
0.338 |
|
| 2005 |
Tateno Y, Saitou N, Okubo K, Sugawara H, Gojobori T. DDBJ in collaboration with mass-sequencing teams on annotation Nucleic Acids Research. 33: D25-D28. PMID 15608189 DOI: 10.1093/nar/gki020 |
0.306 |
|
| 2004 |
Iwama H, Gojobori T. Highly conserved upstream sequences for transcription factor genes and implications for the regulatory network Proceedings of the National Academy of Sciences of the United States of America. 101: 17156-17161. PMID 15572454 DOI: 10.1073/pnas.0407670101 |
0.308 |
|
| 2004 |
Nakamura Y, Itoh T, Matsuda H, Gojobori T. Biased biological functions of horizontally transferred genes in prokaryotic genomes. Nature Genetics. 36: 760-6. PMID 15208628 DOI: 10.1038/ng1381 |
0.479 |
|
| 2004 |
Imanishi T, Itoh T, Suzuki Y, O'Donovan C, Fukuchi S, Koyanagi KO, Barrero RA, Tamura T, Yamaguchi-Kabata Y, Tanino M, Yura K, Miyazaki S, Ikeo K, Homma K, Kasprzyk A, ... ... Gojobori T, et al. Integrative annotation of 21,037 human genes validated by full-length cDNA clones. Plos Biology. 2: e162. PMID 15103394 DOI: 10.1371/Journal.Pbio.0020162 |
0.527 |
|
| 2004 |
Andrews TD, Gojobori T. Strong Positive Selection and Recombination Drive the Antigenic Variation of the PilE Protein of the Human Pathogen Neisseria meningitidis Genetics. 166: 25-32. PMID 15020403 DOI: 10.1534/genetics.166.1.25 |
0.303 |
|
| 2003 |
Niimura Y, Terabe M, Gojobori T, Miura KI. Comparative analysis of the base biases at the gene terminal portions in seven eukaryote genomes Nucleic Acids Research. 31: 5195-5201. PMID 12930971 DOI: 10.1093/nar/gkg701 |
0.316 |
|
| 2003 |
Mineta K, Nakazawa M, Cebrià F, Ikeo K, Agata K, Gojobori T. Origin and evolutionary process of the CNS elucidated by comparative genomics analysis of planarian ESTs Proceedings of the National Academy of Sciences of the United States of America. 100: 7666-7671. PMID 12802012 DOI: 10.1073/Pnas.1332513100 |
0.315 |
|
| 2002 |
Okazaki Y, Furuno M, Kasukawa T, Adachi J, Bono H, Kondo S, Nikaido I, Osato N, Saito R, Suzuki H, Yamanaka I, Kiyosawa H, Yagi K, Tomaru Y, Hasegawa Y, ... ... Gojobori T, et al. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 420: 563-73. PMID 12466851 DOI: 10.1038/Nature01266 |
0.485 |
|
| 2002 |
Sato S, Tanaka M, Miura H, Ikeo K, Gojobori T, Takeuchi T, Yamamoto H. Functional conservation of the promoter regions of vertebrate tyrosinase genes. The Journal of Investigative Dermatology. Symposium Proceedings. 6: 10-8. PMID 11764277 DOI: 10.1046/J.0022-202X.2001.00008.X |
0.31 |
|
| 2001 |
Kawai J, Shinagawa A, Shibata K, Yoshino M, Itoh M, Ishii Y, Arakawa T, Hara A, Fukunishi Y, Konno H, Adachi J, Fukuda S, Aizawa K, Izawa M, Nishi K, ... ... Gojobori T, et al. Functional annotation of a full-length mouse cDNA collection. Nature. 409: 685-90. PMID 11217851 DOI: 10.1038/35055500 |
0.52 |
|
| 1999 |
Itoh T, Takemoto K, Mori H, Gojobori T. Evolutionary instability of operon structures disclosed by sequence comparisons of complete microbial genomes. Molecular Biology and Evolution. 16: 332-46. PMID 10331260 DOI: 10.1093/OXFORDJOURNALS.MOLBEV.A026114 |
0.31 |
|
| 1998 |
Watanabe H, Gojobori T, Miura K, Watanabea H. Bacterial features in the genome of Methanococcus jannaschii in terms of gene composition and biased base composition in ORFs and their surrounding regions. Gene. 205: 7-18. PMID 9461375 DOI: 10.1016/S0378-1119(97)00517-9 |
0.339 |
|
| 1979 |
Matsuda H, Gojobori T. Protein polymorphism and fluctuation of environments. Advances in Biophysics. 12: 53-99. PMID 452981 |
0.378 |
|
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