| Year |
Citation |
Score |
| 2017 |
Gold MP, Fresco JR. A Role for the Mutagenic DNA Self-Catalyzed Depurination Mechanism in the Evolution of 7SL-Derived RNAs. Journal of Molecular Evolution. PMID 29103173 DOI: 10.1007/S00239-017-9811-Y |
0.393 |
|
| 2017 |
Fresco JR, Amosova O. Site-Specific Self-Catalyzed DNA Depurination: A Biological Mechanism That Leads to Mutations and Creates Sequence Diversity. Annual Review of Biochemistry. 86: 461-484. PMID 28654322 DOI: 10.1146/Annurev-Biochem-070611-095951 |
0.776 |
|
| 2015 |
Amosova O, Alvarez-Dominguez JR, Fresco JR. Why the DNA self-depurination mechanism operates in HB-β but not in β-globin paralogs HB-δ, HB-ɛ1, HB-γ1 and HB-γ2. Mutation Research. 778: 11-17. PMID 26042536 DOI: 10.1016/J.Mrfmmm.2015.05.001 |
0.76 |
|
| 2013 |
Alvarez-Dominguez JR, Amosova O, Fresco JR. Self-catalytic DNA depurination underlies human β-globin gene mutations at codon 6 that cause anemias and thalassemias. The Journal of Biological Chemistry. 288: 11581-9. PMID 23457306 DOI: 10.1074/Jbc.M113.454744 |
0.771 |
|
| 2011 |
Amosova O, Smith A, Fresco JR. The consensus sequence for self-catalyzed site-specific G residue depurination in DNA. The Journal of Biological Chemistry. 286: 36316-21. PMID 21868376 DOI: 10.1074/Jbc.M111.272047 |
0.778 |
|
| 2011 |
Amosova O, Kumar V, Deutsch A, Fresco JR. Self-catalyzed site-specific depurination of G residues mediated by cruciform extrusion in closed circular DNA plasmids. The Journal of Biological Chemistry. 286: 36322-30. PMID 21868375 DOI: 10.1074/Jbc.M111.272112 |
0.779 |
|
| 2007 |
Varganov Y, Amosova O, Fresco JR. Third strand-mediated psoralen-induced correction of the sickle cell mutation on a plasmid transfected into COS-7 cells. Gene Therapy. 14: 173-9. PMID 16943853 DOI: 10.1038/Sj.Gt.3302850 |
0.762 |
|
| 2006 |
Amosova O, Coulter R, Fresco JR. Self-catalyzed site-specific depurination of guanine residues within gene sequences. Proceedings of the National Academy of Sciences of the United States of America. 103: 4392-7. PMID 16537362 DOI: 10.1073/Pnas.0508499103 |
0.779 |
|
| 2005 |
Liang H, Landweber LF, Fresco JR. Are stop codons recognized by base triplets in the large ribosomal RNA subunit? Rna (New York, N.Y.). 11: 1478-84. PMID 16199759 DOI: 10.1261/Rna.2780505 |
0.367 |
|
| 2003 |
Dolinnaya NG, Fresco JR. Conformational polymorphism of d(A-G)n and related oligonucleotide sequences. Progress in Nucleic Acid Research and Molecular Biology. 75: 321-47. PMID 14604016 DOI: 10.1016/S0079-6603(03)75009-0 |
0.38 |
|
| 2003 |
Lavelle L, Fresco JR. Enhanced stabilization of the triplexes d(C(+)-T)(6):d(A-G)(6);d(C-T)(6), d(T)(21):d(A)(21);d(T)(21) and poly r(U:AU) by water structure-making solutes. Biophysical Chemistry. 105: 701-20. PMID 14499928 DOI: 10.1016/S0301-4622(03)00098-X |
0.652 |
|
| 2003 |
Lavelle L, Fresco JR. Stabilization of nucleic acid triplexes by high concentrations of sodium and ammonium salts follows the Hofmeister series. Biophysical Chemistry. 105: 681-99. PMID 14499927 DOI: 10.1016/S0301-4622(03)00097-8 |
0.652 |
|
| 2003 |
Broitman SL, Amosova O, Fresco JR. Repairing the Sickle Cell mutation. III. Effect of irradiation wavelength on the specificity and type of photoproduct formed by a 3'-terminal psoralen on a third strand directed to the mutant base pair. Nucleic Acids Research. 31: 4682-8. PMID 12907707 DOI: 10.1093/Nar/Gkg658 |
0.766 |
|
| 2003 |
Amosova O, Broitman SL, Fresco JR. Repairing the Sickle Cell mutation. II. Effect of psoralen linker length on specificity of formation and yield of third strand-directed photoproducts with the mutant target sequence. Nucleic Acids Research. 31: 4673-81. PMID 12907706 DOI: 10.1093/Nar/Gkg659 |
0.772 |
|
| 2003 |
Brooks DJ, Fresco JR. Greater GNN pattern bias in sequence elements encoding conserved residues of ancient proteins may be an indicator of amino acid composition of early proteins. Gene. 303: 177-85. PMID 12559579 DOI: 10.1016/S0378-1119(02)01176-9 |
0.348 |
|
| 2002 |
Brooks DJ, Fresco JR, Lesk AM, Singh M. Evolution of amino acid frequencies in proteins over deep time: inferred order of introduction of amino acids into the genetic code. Molecular Biology and Evolution. 19: 1645-55. PMID 12270892 DOI: 10.1093/Oxfordjournals.Molbev.A003988 |
0.302 |
|
| 2002 |
Brooks DJ, Fresco JR. Increased frequency of cysteine, tyrosine, and phenylalanine residues since the last universal ancestor. Molecular & Cellular Proteomics : McP. 1: 125-31. PMID 12096130 DOI: 10.1074/Mcp.M100001-Mcp200 |
0.306 |
|
| 2001 |
Fabregat I, Koch KS, Aoki T, Atkinson AE, Dang H, Amosova O, Fresco JR, Schildkraut CL, Leffert HL. Functional pleiotropy of an intramolecular triplex-forming fragment from the 3'-UTR of the rat Pigr gene. Physiological Genomics. 5: 53-65. PMID 11242589 DOI: 10.1152/Physiolgenomics.2001.5.2.53 |
0.735 |
|
| 1999 |
Amosova OA, Fresco JR. A search for base analogs to enhance third-strand binding to 'inverted' target base pairs of triplexes in the pyrimidine/parallel motif. Nucleic Acids Research. 27: 4632-5. PMID 10556320 DOI: 10.1093/Nar/27.23.4632 |
0.759 |
|
| 1999 |
Broitman S, Amosova O, Dolinnaya NG, Fresco JR. Repairing the sickle cell mutation. I. Specific covalent binding of a photoreactive third strand to the mutated base pair. The Journal of Biological Chemistry. 274: 21763-8. PMID 10419490 DOI: 10.1074/Jbc.274.31.21763 |
0.783 |
|
| 1999 |
Johnson MD, Fresco JR. Third-strand in situ hybridization (TISH) to non-denatured metaphase spreads and interphase nuclei. Chromosoma. 108: 181-9. PMID 10398847 DOI: 10.1007/S004120050367 |
0.334 |
|
| 1999 |
Suen W, Spiro TG, Sowers LC, Fresco JR. Identification by UV resonance Raman spectroscopy of an imino tautomer of 5-hydroxy-2'-deoxycytidine, a powerful base analog transition mutagen with a much higher unfavored tautomer frequency than that of the natural residue 2'-deoxycytidine. Proceedings of the National Academy of Sciences of the United States of America. 96: 4500-5. PMID 10200291 DOI: 10.1073/Pnas.96.8.4500 |
0.313 |
|
| 1998 |
Fresco JR. From DNA Melting Profiles to tRNA Crystals and RNA Chaperones: How the Secondary and Tertiary Structures of Ribonucleic Acids Were Discovered—A Personal Recollection Cold Spring Harbor Monograph Archive. 35: 1-35. DOI: 10.1101/087969509.35.1 |
0.327 |
|
| 1997 |
Amosova O, George J, Fresco JR. Effect of the 1-(2'-deoxy-beta-D-ribofuranosyl)-3-nitropyrrole residue on the stability of DNA duplexes and triplexes. Nucleic Acids Research. 25: 1930-4. PMID 9115359 DOI: 10.1093/Nar/25.10.1930 |
0.754 |
|
| 1997 |
Dolinnaya NG, Ulku A, Fresco JR. Parallel-stranded linear homoduplexes of d(A+-G)n > 10 and d(A-G)n > 10 manifesting the contrasting ionic strength sensitivities of poly(A+.A+) and DNA. Nucleic Acids Research. 25: 1100-7. PMID 9092616 DOI: 10.1093/Nar/25.6.1100 |
0.439 |
|
| 1996 |
Mukerji I, Shiber MC, Fresco JR, Spiro TG. A UV resonance Raman study of hairpin dimer helices of d(A-G)10 at neutral pH containing intercalated dA residues and alternating dG tetrads. Nucleic Acids Research. 24: 5013-20. PMID 9016674 DOI: 10.1093/Nar/24.24.5013 |
0.378 |
|
| 1996 |
Shiber MC, Braswell EH, Klump H, Fresco JR. Duplex-tetraplex equilibrium between a hairpin and two interacting hairpins of d(A-G)10 at neutral pH. Nucleic Acids Research. 24: 5004-12. PMID 9016673 DOI: 10.1093/Nar/24.24.5004 |
0.367 |
|
| 1995 |
Lavelle L, Fresco JR. UV spectroscopic identification and thermodynamic analysis of protonated third strand deoxycytidine residues at neutrality in the triplex d(C(+)-T)6:[d(A-G)6.d(C-T)6]; evidence for a proton switch. Nucleic Acids Research. 23: 2692-705. PMID 7651830 DOI: 10.1093/Nar/23.14.2692 |
0.686 |
|
| 1995 |
Mukerji I, Shiber MC, Spiro TG, Fresco JR. A UV resonance Raman study of d(A(+)-G)10, a single-stranded helix without stacked or paired bases. Biochemistry. 34: 14300-3. PMID 7578033 DOI: 10.1021/Bi00044A006 |
0.346 |
|
| 1995 |
Shiber MC, Lavelle L, Fossella JA, Fresco JR. Alpha-DNA, a single-stranded secondary structure stabilized by ionic and hydrogen bonds: d(A(+)-G)n. Biochemistry. 34: 14293-9. PMID 7578032 DOI: 10.1021/Bi00044A005 |
0.675 |
|
| 1993 |
Dolinnaya NG, Braswell EH, Fossella JA, Klump H, Fresco JR. Molecular and thermodynamic properties of d(A(+)-G)10, a single-stranded nucleic acid helix without paired or stacked bases. Biochemistry. 32: 10263-70. PMID 8399154 DOI: 10.1021/Bi00089A049 |
0.425 |
|
| 1993 |
Fossella JA, Kim YJ, Shih H, Richards EG, Fresco JR. Relative specificities in binding of Watson-Crick base pairs by third strand residues in a DNA pyrimidine triplex motif. Nucleic Acids Research. 21: 4511-5. PMID 8233785 DOI: 10.1093/Nar/21.19.4511 |
0.457 |
|
| 1992 |
Dolinnaya NG, Fresco JR. Single-stranded nucleic acid helical secondary structure stabilized by ionic bonds: d(A(+)-G)10. Proceedings of the National Academy of Sciences of the United States of America. 89: 9242-6. PMID 1409629 DOI: 10.1073/Pnas.89.19.9242 |
0.434 |
|
| 1988 |
Letai AG, Palladino MA, Fromm E, Rizzo V, Fresco JR. Specificity in formation of triple-stranded nucleic acid helical complexes: studies with agarose-linked polyribonucleotide affinity columns. Biochemistry. 27: 9108-12. PMID 3242616 DOI: 10.1021/Bi00426A007 |
0.451 |
|
| 1983 |
Ornstein RL, Fresco JR. Correlation of Tm and sequence of DNA duplexes with delta H computed by an improved empirical potential method. Biopolymers. 22: 1979-2000. PMID 6616016 DOI: 10.1002/Bip.360220811 |
0.388 |
|
| 1983 |
Ornstein RL, Fresco JR. Correlation of crystallographically determined and computationally predicted hydrogen-bonded pairing configurations of nucleic acid bases. Proceedings of the National Academy of Sciences of the United States of America. 80: 5171-5. PMID 6577415 DOI: 10.1073/Pnas.80.17.5171 |
0.33 |
|
| 1983 |
Ornstein RL, Fresco JR. Correlation of Tm, sequence, and delta H of complementary RNA helices and comparison with DNA helices. Biopolymers. 22: 2001-16. PMID 6193821 DOI: 10.1002/Bip.360220812 |
0.358 |
|
| 1982 |
Karpel RL, Miller NS, Fresco JR. Mechanistic studies of ribonucleic acid renaturation by a helix-destabilizing protein. Biochemistry. 21: 2102-8. PMID 6178431 DOI: 10.1021/Bi00538A019 |
0.34 |
|
| 1980 |
Topal MD, Fresco JR. Fluorescence of terbium ion-nucleic acid complexes: a sensitive specific probe for unpaired residues in nucleic acids. Biochemistry. 19: 5531-7. PMID 7459329 DOI: 10.1021/Bi00565A011 |
0.384 |
|
| 1976 |
Topal MD, Fresco JR. Base pairing and fidelity in codon-anticodon interaction. Nature. 263: 289-93. PMID 958483 DOI: 10.1038/263289A0 |
0.316 |
|
| 1976 |
Topal MD, Fresco JR. Complementary base pairing and the origin of substitution mutations. Nature. 263: 285-9. PMID 958482 DOI: 10.1038/263285A0 |
0.451 |
|
| 1975 |
Karpel RL, Miller NS, Lesk AM, Fresco JR. Stabilization of the native tertiary stucture of yeast tRNALeu3 by cationic metal complexes. Journal of Molecular Biology. 97: 519-32. PMID 1102713 DOI: 10.1016/S0022-2836(75)80056-8 |
0.32 |
|
| 1975 |
Lomant AJ, Fresco JR. Structural and energetic consequences of noncomplementary base oppositions in nucleic acid helices. Progress in Nucleic Acid Research and Molecular Biology. 15: 185-218. PMID 1094495 DOI: 10.1016/S0079-6603(08)60120-8 |
0.406 |
|
| 1974 |
Uhlenbeck OC, Chirikjian JG, Fresco JR. Oligonucleotide binding to the native and denatured conformers of yeast transfer RNA-3 Lea. Journal of Molecular Biology. 89: 495-504. PMID 4613864 DOI: 10.1016/0022-2836(74)90478-1 |
0.346 |
|
| 1973 |
Lomant AJ, Fresco JR. Polynucleotides. 13. Stoichiometric and thermodynamic studies of polynucleotide helices with non-complementary residues. Biopolymers. 12: 1889-903. PMID 4733714 DOI: 10.1002/Bip.1973.360120815 |
0.404 |
|
| 1973 |
Lomant AJ, Fresco JR. Polynucleotides. XIV. Photochemical evidence for an extrahelical, solvent-accessible environment of non-complementary residues in polynucleotide helices. Journal of Molecular Biology. 77: 345-54. PMID 4727069 DOI: 10.1016/0022-2836(73)90442-7 |
0.379 |
|
| 1973 |
Wong YP, Kearns DR, Shulman RG, Yamane T, Chang S, Chirikjian JG, Fresco JR. High resolution nuclear magnetic resonance study of base pairing in the native and denaturated conformers of transfer RNA Leu 3 . Journal of Molecular Biology. 74: 403-6. PMID 4571235 DOI: 10.1016/0022-2836(73)90380-X |
0.32 |
|
| 1973 |
Webb PK, Fresco JR. Tritium exchange studies of transfer RNA in native and denaturated conformations. Journal of Molecular Biology. 74: 387-402. PMID 4571234 DOI: 10.1016/0022-2836(73)90379-3 |
0.36 |
|
| 1972 |
Lomant AJ, Fresco JR. Polynucleotides. X. Influences of polynucleotide conformation on susceptibility of pyrimidine residues to photochemical attack. Journal of Molecular Biology. 66: 49-64. PMID 5040368 DOI: 10.1016/S0022-2836(72)80005-6 |
0.331 |
|
| 1972 |
Lomant AJ, Fresco JR. Ultraviolet photochemistry as a probe of polyribonucleotide conformation. Progress in Nucleic Acid Research and Molecular Biology. 12: 1-27. PMID 4557057 DOI: 10.1016/S0079-6603(08)60657-1 |
0.329 |
|
| 1971 |
Kowalski S, Fresco JR. Preparation of highly labeled (32P)nucleic acids from yeasts; isolation of "denaturable" leucine acceptor transfer RNA. Science (New York, N.Y.). 172: 384-5. PMID 5550488 DOI: 10.1126/Science.172.3981.384 |
0.303 |
|
| 1967 |
Lindahl T, Adams A, Fresco JR. Isolation of "renaturable" transfer ribonucleic acids. The Journal of Biological Chemistry. 242: 3129-34. PMID 5338922 |
0.435 |
|
| 1967 |
Lindahl T, Adams A, Geroch M, Fresco JR. Selective recognition of the native conformation of transfer ribonucleic acids by enzymes. Proceedings of the National Academy of Sciences of the United States of America. 57: 178-85. PMID 5233167 DOI: 10.1073/Pnas.57.1.178 |
0.528 |
|
| 1967 |
Adams A, Lindahl T, Fresco JR. Conformational differences between the biologically active and inactive forms of a transfer ribonucleic acid. Proceedings of the National Academy of Sciences of the United States of America. 57: 1684-91. PMID 5231404 DOI: 10.1073/Pnas.57.6.1684 |
0.524 |
|
| 1967 |
Lindahl T, Fresco JR. [79] Preparation of highly purified sRNA from yeast Methods in Enzymology. 12: 601-607. DOI: 10.1016/S0076-6879(67)12091-0 |
0.476 |
|
| 1966 |
Lindahl T, Adams A, Fresco JR. Renaturation of transfer ribonucleic acids through site binding of magnesium. Proceedings of the National Academy of Sciences of the United States of America. 55: 941-8. PMID 5327073 DOI: 10.1073/Pnas.55.4.941 |
0.519 |
|
| 1966 |
Fresco JR, Adams A, Ascione R, Henley D, Lindahl T. Tertiary structure in transfer ribonucleic acids. Cold Spring Harbor Symposia On Quantitative Biology. 31: 527-37. PMID 5237202 DOI: 10.1101/Sqb.1966.031.01.068 |
0.51 |
|
| 1966 |
Henley DD, Lindahl T, Fresco JR. Hydrodynamic changes accompanying the thermal denaturation of transfer ribonucleic acid. Proceedings of the National Academy of Sciences of the United States of America. 55: 191-8. PMID 5220867 DOI: 10.1073/Pnas.55.1.191 |
0.498 |
|
| 1965 |
Lindahl T, Henley DD, Fresco JR. Molecular weight and molecular weight distribution of unfractionated yeast transfer ribonucleic acid. Journal of the American Chemical Society. 87: 4961-3. PMID 5844470 DOI: 10.1021/Ja00949A055 |
0.475 |
|
| 1963 |
Richards EG, Flessel CP, Fresco JR. Polynucleotides. VI. Molecular properties and conformation of polyribouridylic acid Biopolymers. 1: 431-446. DOI: 10.1002/Bip.360010504 |
0.305 |
|
| 1960 |
FRESCO JR, BENDICH A. The metabolic stability of rat liver deoxyribonucleic acid: a turnover study. The Journal of Biological Chemistry. 235: 1124-8. PMID 13824903 |
0.412 |
|
| 1958 |
Bendich A, Pahl HB, Korngold GC, Rosenkranz HS, Fresco JR. Fractionation of deoxyribonucleic acids on columns of anion exchangers; methodology Journal of the American Chemical Society. 80: 3949-3956. DOI: 10.1021/Ja01548A038 |
0.432 |
|
| 1955 |
Bendich A, Fresco JR, Rosenkranz HS, Beiser SM. Fractionation of deoxyribonucleic acid (DNA) by ion exchange [5] Journal of the American Chemical Society. 77: 3671-3673. |
0.473 |
|
| Show low-probability matches. |
