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Zhiping Deng, Ph.D. - Publications

Affiliations: 
2003 Purdue University, West Lafayette, IN, United States 
Area:
Plant Physiology, Plant Culture Agriculture
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42 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2024 Ma L, Zheng Y, Zhou Z, Deng Z, Tan J, Bai C, Fu A, Wang Q, Zuo J. Dissection of mRNA acC acetylation modifications in AC and Nr fruits: insights into the regulation of fruit ripening by ethylene. Molecular Horticulture. 4: 5. PMID 38369544 DOI: 10.1186/s43897-024-00082-7  0.319
2024 Zheng X, Chen H, Deng Z, Wu Y, Zhong L, Wu C, Yu X, Chen Q, Yan S. The tRNA thiolation-mediated translational control is essential for plant immunity. Elife. 13. PMID 38284752 DOI: 10.7554/eLife.93517  0.303
2023 Li A, Lin J, Zeng Z, Deng Z, Tan J, Chen X, Ding G, Zhu M, Xu B, Atkinson RG, Nieuwenhuizen NJ, Ampomah-Dwamena C, Cheng Y, Deng X, Zeng Y. The kiwifruit amyloplast proteome (kfALP): a resource to better understand the mechanisms underlying amyloplast biogenesis and differentiation. The Plant Journal : For Cell and Molecular Biology. PMID 38159243 DOI: 10.1111/tpj.16611  0.319
2023 Li C, Li X, Deng Z, Song Y, Liu X, Tang XA, Li Z, Zhang Y, Zhang B, Tang W, Shang JX, Sun Y. EGR1 and EGR2 positively regulate plant ABA signaling by modulating the phosphorylation of SnRK2.2. The New Phytologist. PMID 38095247 DOI: 10.1111/nph.19458  0.801
2023 Feng H, Tan J, Deng Z. Decoding Plant Adaptation: UBP12 and UBP13 in Hormone Signaling, Light Response, and Developmental Processes. Journal of Experimental Botany. PMID 37904584 DOI: 10.1093/jxb/erad429  0.433
2023 Zhang J, Li Y, Du S, Deng Z, Liang Q, Song G, Wang H, Yan M, Wang X. Transcriptomic and proteomic analysis reveals (E)-2-hexenal modulates tomato resistance against Botrytis cinerea by regulating plant defense mechanism. Plant Molecular Biology. 111: 505-522. PMID 37027117 DOI: 10.1007/s11103-023-01339-3  0.394
2023 Zhang J, Liang Q, Li Y, Deng Z, Song G, Wang H, Yan M, Wang X. Integrated transcriptome and metabolome analyses shed light on the defense mechanisms in tomato plants after (E)-2-hexenal fumigation. Genomics. 115: 110592. PMID 36854356 DOI: 10.1016/j.ygeno.2023.110592  0.383
2022 Miao R, Ye Z, MacFarlane S, Li Y, Mao Q, Tian Y, Deng Z, Sun Z, Yang J, Li J, Yan F, Chen J, Yu C. The P3N-PIPO Protein Encoded by Wheat Yellow Mosaic Virus Is a Pathogenicity Determinant and Promotes Its Pathogenicity through Interaction with NbRLK6 in . Viruses. 14. PMID 36298727 DOI: 10.3390/v14102171  0.303
2022 Wang H, Han C, Wang JG, Chu X, Shi W, Yao L, Chen J, Hao W, Deng Z, Fan M, Bai MY. Regulatory functions of cellular energy sensor SnRK1 for nitrate signalling through NLP7 repression. Nature Plants. PMID 36050463 DOI: 10.1038/s41477-022-01236-5  0.734
2022 Guo S, Zheng Y, Meng D, Zhao X, Sang Z, Tan J, Deng Z, Lang Z, Zhang B, Wang Q, Mondher B, Zuo J. DNA and coding/noncoding RNA methylation analysis provide insights into tomato fruit ripening. The Plant Journal : For Cell and Molecular Biology. PMID 36004545 DOI: 10.1111/tpj.15951  0.3
2022 Xing J, Tan J, Feng H, Zhou Z, Deng M, Luo H, Deng Z. Integrative Proteome and Phosphoproteome Profiling of Early Cold Response in Maize Seedlings. International Journal of Molecular Sciences. 23. PMID 35742945 DOI: 10.3390/ijms23126493  0.41
2022 Yue ZL, Liu N, Deng ZP, Zhang Y, Wu ZM, Zhao JL, Sun Y, Wang ZY, Zhang SW. The receptor kinase OsWAK11 monitors cell wall pectin changes to fine-tune brassinosteroid signaling and regulate cell elongation in rice. Current Biology : Cb. PMID 35512695 DOI: 10.1016/j.cub.2022.04.028  0.585
2021 Tan J, Zhou Z, Feng H, Xing J, Niu Y, Deng Z. Data-Independent Acquisition-Based Proteome and Phosphoproteome Profiling Reveals Early Protein Phosphorylation and Dephosphorylation Events in Seedlings upon Cold Exposure. International Journal of Molecular Sciences. 22. PMID 34884660 DOI: 10.3390/ijms222312856  0.522
2021 Bi Y, Deng Z, Ni W, Shrestha R, Savage D, Hartwig T, Patil S, Hong SH, Zhang Z, Oses-Prieto JA, Li KH, Quail PH, Burlingame AL, Xu SL, Wang ZY. Arabidopsis ACINUS is O-glycosylated and regulates transcription and alternative splicing of regulators of reproductive transitions. Nature Communications. 12: 945. PMID 33574257 DOI: 10.1038/s41467-021-20929-7  0.746
2021 Wang L, Zhan L, Zhao Y, Huang Y, Wu C, Pan T, Qin Q, Xu Y, Deng Z, Li J, Hu H, Xue S, Yan S. The ATR-WEE1 kinase module inhibits the MAC complex to regulate replication stress response. Nucleic Acids Research. PMID 33450002 DOI: 10.1093/nar/gkaa1082  0.356
2020 Han C, Liu Y, Shi W, Qiao Y, Wang L, Tian Y, Fan M, Deng Z, Lau OS, De Jaeger G, Bai MY. KIN10 promotes stomatal development through stabilization of the SPEECHLESS transcription factor. Nature Communications. 11: 4214. PMID 32843632 DOI: 10.1038/S41467-020-18048-W  0.752
2020 Wang Z, Ren Z, Cheng C, Wang T, Ji H, Zhao Y, Deng Z, Zhi L, Lu J, Wu X, Xu S, Cao M, Zhao H, Liu L, Zhu J, et al. Counteraction of ABA-Mediated Inhibition of Seed Germination and Seedling Establishment by ABA Signaling Terminator in Arabidopsis. Molecular Plant. PMID 32619606 DOI: 10.1016/J.Molp.2020.06.011  0.498
2019 Zhao JL, Zhang LQ, Liu N, Xu S, Yue ZL, Zhang LL, Deng Z, Burlingame AL, Sun DY, Wang ZY, Sun Y, Zhang SW. Mutual regulation of receptor-like kinase SIT1 and B'κ-PP2A shapes the early response of rice to salt stress. The Plant Cell. PMID 31221736 DOI: 10.1105/Tpc.18.00706  0.778
2019 Zhan Y, Deng Z, Yan Y, Zhang H, Lu C, Yang Z, Shang L, Huang Y, Lv F, Liu Y, Liu Y, Wang S, Chen S, Zhang XX, Cheng Q, et al. NfiR, a new regulatory ncRNA, is required in concert with the NfiS ncRNA for optimal expression of nitrogenase genes in A1501. Applied and Environmental Microbiology. PMID 31076427 DOI: 10.1128/AEM.00762-19  0.347
2019 Zhao J, Xu J, Chen B, Cui W, Zhou Z, Song X, Chen Z, Zheng H, Lin L, Peng J, Lu Y, Deng Z, Chen J, Yan F. Characterization of Proteins Involved in Chloroplast Targeting Disturbed by Rice Stripe Virus by Novel Protoplast⁻Chloroplast Proteomics. International Journal of Molecular Sciences. 20. PMID 30634635 DOI: 10.3390/ijms20020253  0.315
2017 Tan J, Zhou Z, Niu Y, Sun X, Deng Z. Identification and Functional Characterization of Tomato CircRNAs Derived from Genes Involved in Fruit Pigment Accumulation. Scientific Reports. 7: 8594. PMID 28819222 DOI: 10.1038/S41598-017-08806-0  0.38
2016 Deng Z, Wang ZY, Kutschera U. Seedling development in maize cv. B73 and blue light-mediated proteomic changes in the tip vs. stem of the coleoptile. Protoplasma. PMID 27631339 DOI: 10.1007/S00709-016-1023-6  0.469
2016 Chen X, Dong Y, Yu C, Fang X, Deng Z, Yan C, Chen J. Analysis of the Proteins Secreted from the Oryza meyeriana Suspension-Cultured Cells Induced by Xanthomonas oryzae pv. oryzae. Plos One. 11: e0154793. PMID 27196123 DOI: 10.1371/Journal.Pone.0154793  0.507
2016 Chen X, Deng Z, Yu C, Yan C, Chen J. Secretome analysis of rice suspension-cultured cells infected by Xanthomonas oryzae pv.oryza (Xoo). Proteome Science. 14: 2. PMID 26839515 DOI: 10.1186/S12953-016-0091-Z  0.388
2016 Huo C, Zhang B, Wang H, Wang F, Liu M, Gao Y, Zhang W, Deng Z, Sun D, Tang W. Comparative study of early cold-regulated proteins by two dimensional difference gel electrophoresis reveals a key role for phospholipase Dα1 in mediating cold acclimation signaling pathway in rice. Molecular & Cellular Proteomics : McP. PMID 26747563 DOI: 10.1074/Mcp.M115.049759  0.78
2014 Sun X, Yang Q, Deng Z, Ye X. Digital inventory of Arabidopsis transcripts revealed by 61 RNA sequencing samples. Plant Physiology. 166: 869-78. PMID 25118256 DOI: 10.1104/Pp.114.241604  0.373
2014 Deng Z, Oses-Prieto JA, Kutschera U, Tseng TS, Hao L, Burlingame AL, Wang ZY, Briggs WR. Blue light-induced proteomic changes in etiolated Arabidopsis seedlings. Journal of Proteome Research. 13: 2524-33. PMID 24712693 DOI: 10.1021/Pr500010Z  0.501
2013 Wang C, Shang JX, Chen QX, Oses-Prieto JA, Bai MY, Yang Y, Yuan M, Zhang YL, Mu CC, Deng Z, Wei CQ, Burlingame AL, Wang ZY, Sun Y. Identification of BZR1-interacting proteins as potential components of the brassinosteroid signaling pathway in Arabidopsis through tandem affinity purification. Molecular & Cellular Proteomics : McP. 12: 3653-65. PMID 24019147 DOI: 10.1074/Mcp.M113.029256  0.828
2012 Deng Z, Bu S, Wang ZY. Quantitative analysis of protein phosphorylation using two-dimensional difference gel electrophoresis. Methods in Molecular Biology (Clifton, N.J.). 876: 47-66. PMID 22576085 DOI: 10.1007/978-1-61779-809-2_4  0.603
2011 Deng Z, Xu S, Chalkley RJ, Oses-Prieto JA, Burlingame AL, Wang ZY, Kutschera U. Rapid auxin-mediated changes in the proteome of the epidermal cells in rye coleoptiles: implications for the initiation of growth. Plant Biology (Stuttgart, Germany). 14: 420-7. PMID 22117532 DOI: 10.1111/J.1438-8677.2011.00513.X  0.76
2011 Tang W, Yuan M, Wang R, Yang Y, Wang C, Oses-Prieto JA, Kim TW, Zhou HW, Deng Z, Gampala SS, Gendron JM, Jonassen EM, Lillo C, DeLong A, Burlingame AL, et al. PP2A activates brassinosteroid-responsive gene expression and plant growth by dephosphorylating BZR1. Nature Cell Biology. 13: 124-31. PMID 21258370 DOI: 10.1038/Ncb2151  0.756
2011 Li T, Xu SL, Oses-Prieto JA, Putil S, Xu P, Wang RJ, Li KH, Maltby DA, An LH, Burlingame AL, Deng ZP, Wang ZY. Proteomics analysis reveals post-translational mechanisms for cold-induced metabolic changes in Arabidopsis. Molecular Plant. 4: 361-74. PMID 21242321 DOI: 10.1093/Mp/Ssq078  0.751
2010 Wang F, Bai MY, Deng Z, Oses-Prieto JA, Burlingame AL, Lu T, Chong K, Wang ZY. Proteomic study identifies proteins involved in brassinosteroid regulation of rice growth. Journal of Integrative Plant Biology. 52: 1075-85. PMID 21106006 DOI: 10.1111/J.1744-7909.2010.00992.X  0.793
2010 Kutschera U, Deng Z, Oses-Prieto JA, Burlingame AL, Wang ZY. Cessation of coleoptile elongation and loss of auxin sensitivity in developing rye seedlings: a quantitative proteomic analysis. Plant Signaling & Behavior. 5: 509-17. PMID 20234181 DOI: 10.4161/Psb.11210  0.459
2010 Tang W, Deng Z, Wang ZY. Proteomics shed light on the brassinosteroid signaling mechanisms. Current Opinion in Plant Biology. 13: 27-33. PMID 20004136 DOI: 10.1016/J.Pbi.2009.10.007  0.79
2009 Kim TW, Guan S, Sun Y, Deng Z, Tang W, Shang JX, Sun Y, Burlingame AL, Wang ZY. Brassinosteroid signal transduction from cell-surface receptor kinases to nuclear transcription factors. Nature Cell Biology. 11: 1254-60. PMID 19734888 DOI: 10.1038/Ncb1970  0.836
2008 Gu Y, Deng Z, Paredez AR, DeBolt S, Wang ZY, Somerville C. Prefoldin 6 is required for normal microtubule dynamics and organization in Arabidopsis Proceedings of the National Academy of Sciences of the United States of America. 105: 18064-18069. PMID 19004800 DOI: 10.1073/Pnas.0808652105  0.459
2008 Tang W, Kim TW, Oses-Prieto JA, Sun Y, Deng Z, Zhu S, Wang R, Burlingame AL, Wang ZY. BSKs mediate signal transduction from the receptor kinase BRI1 in Arabidopsis. Science (New York, N.Y.). 321: 557-60. PMID 18653891 DOI: 10.1126/Science.1156973  0.801
2008 Tang W, Deng Z, Oses-Prieto JA, Suzuki N, Zhu S, Zhang X, Burlingame AL, Wang ZY. Proteomics studies of brassinosteroid signal transduction using prefractionation and two-dimensional DIGE. Molecular & Cellular Proteomics : McP. 7: 728-38. PMID 18182375 DOI: 10.1074/Mcp.M700358-Mcp200  0.841
2007 Deng Z, Zhang X, Tang W, Oses-Prieto JA, Suzuki N, Gendron JM, Chen H, Guan S, Chalkley RJ, Peterman TK, Burlingame AL, Wang ZY. A proteomics study of brassinosteroid response in Arabidopsis. Molecular & Cellular Proteomics : McP. 6: 2058-71. PMID 17848588 DOI: 10.1074/Mcp.M700123-Mcp200  0.818
2007 Gampala SS, Kim TW, He JX, Tang W, Deng Z, Bai MY, Guan S, Lalonde S, Sun Y, Gendron JM, Chen H, Shibagaki N, Ferl RJ, Ehrhardt D, Chong K, et al. An essential role for 14-3-3 proteins in brassinosteroid signal transduction in Arabidopsis. Developmental Cell. 13: 177-89. PMID 17681130 DOI: 10.1016/J.Devcel.2007.06.009  0.744
2003 Ramakrishna W, Deng Z, Ding CK, Handa AK, Ozminkowski RH. A novel small heat shock protein gene, vis1, contributes to pectin depolymerization and juice viscosity in tomato fruit. Plant Physiology. 131: 725-35. PMID 12586896 DOI: 10.1104/Pp.012401  0.623
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