| Year |
Citation |
Score |
| 2023 |
Volpe KE, Samuels DC, Elson JL, Steyn JS, Gebretsadik T, Ellis RJ, Heaton RK, Kallianpur AR, Letendre S, Hulgan T. Mitochondrial DNA Mutation Pathogenicity Score and Neurocognitive Performance in Persons with HIV. Mitochondrion. PMID 37989461 DOI: 10.1016/j.mito.2023.11.003 |
0.302 |
|
| 2023 |
Wang M, Deng W, Samuels DC, Zhao Z, Simon LM. MitoTrace: A Computational Framework for Analyzing Mitochondrial Variation in Single-Cell RNA Sequencing Data. Genes. 14. PMID 37372402 DOI: 10.3390/genes14061222 |
0.349 |
|
| 2020 |
Samuels DC, Below JE, Ness S, Yu H, Leng S, Guo Y. Alternative Applications of Genotyping Array Data Using Multivariant Methods. Trends in Genetics : Tig. PMID 32773169 DOI: 10.1016/J.Tig.2020.07.006 |
0.331 |
|
| 2020 |
Sun J, Brown TT, Tong W, Samuels D, Tien P, Aissani B, Aouizerat B, Villacres M, Kuniholm MH, Gustafson D, Michel K, Cohen M, Schneider M, Adimora AA, Ali MK, et al. African Mitochondrial DNA Haplogroup L2 is Associated with Slower Decline of β-Cell Function and Lower Incidence of Diabetes Mellitus in non-Hispanic Black Women with HIV. Clinical Infectious Diseases : An Official Publication of the Infectious Diseases Society of America. PMID 31927570 DOI: 10.1093/Cid/Ciaa026 |
0.368 |
|
| 2019 |
Erlandson KM, Bradford Y, Samuels DC, Brown T, Sun J, Wu K, Tassiopoulos K, Ritchie MD, Haas D, Hulgan T. Mitochondrial DNA Haplogroups and Frailty in Adults Living with HIV. Aids Research and Human Retroviruses. PMID 31822125 DOI: 10.1089/Aid.2019.0233 |
0.401 |
|
| 2019 |
Samuels DC, Hulgan T, Fessel JP, Billings FT, Thompson JL, Chandrasekhar R, Girard TD. Mitochondrial DNA Haplogroups and Delirium During Sepsis. Critical Care Medicine. 47: 1065-1071. PMID 31306254 DOI: 10.1097/Ccm.0000000000003810 |
0.455 |
|
| 2018 |
Hulgan T, Kallianpur AR, Guo Y, Barnholtz-Sloan JS, Gittleman H, Brown TT, Ellis R, Letendre S, Heaton RK, Samuels DC. Peripheral blood mitochondrial DNA copy number obtained from genome-wide genotype data is associated with neurocognitive impairment in persons with chronic HIV infection. Journal of Acquired Immune Deficiency Syndromes (1999). PMID 30531306 DOI: 10.1097/Qai.0000000000001930 |
0.426 |
|
| 2018 |
Hulgan T, Ramsey BS, Koethe JR, Samuels DC, Gerschenson M, Libutti DE, Sax PE, Daar ES, Mccomsey GA, Brown TT. Relationships between Adipose Mitochondrial Function, Serum Adiponectin, and Insulin Resistance in Persons with HIV after 96 weeks of Antiretroviral Therapy. Journal of Acquired Immune Deficiency Syndromes (1999). PMID 30531304 DOI: 10.1097/Qai.0000000000001926 |
0.412 |
|
| 2018 |
Smieszek S, Jia P, Samuels DC, Zhao Z, Barnholtz-Sloan J, Kaur H, Letendre S, Ellis R, Franklin DR, Hulgan T, Kallianpur A, Bush WS. Nuclear-Mitochondrial interactions influence susceptibility to HIV-associated neurocognitive impairment. Mitochondrion. PMID 30026132 DOI: 10.1016/J.Mito.2018.07.004 |
0.413 |
|
| 2018 |
Kallianpur AR, Gerschenson M, Hulgan T, Kaur H, Clifford D, Haas D, Murdock DG, McArthur JC, Samuels DC, Simpson D. Hemochromatosis (HFE) Gene Variants are Associated with Increased Mitochondrial DNA Levels during HIV-1 Infection and Antiretroviral Therapy. Aids Research and Human Retroviruses. PMID 29968489 DOI: 10.1089/Aid.2018.0025 |
0.418 |
|
| 2018 |
Otten ABC, Sallevelt SCEH, Carling PJ, Dreesen JCFM, Drüsedau M, Spierts S, Paulussen ADC, de Die-Smulders CEM, Herbert M, Chinnery PF, Samuels DC, Lindsey P, Smeets HJM. Mutation-specific effects in germline transmission of pathogenic mtDNA variants. Human Reproduction (Oxford, England). PMID 29850888 DOI: 10.1093/Humrep/Dey114 |
0.454 |
|
| 2018 |
Cavadas B, Pereira JB, Correia M, Fernandes V, Eloy C, Sobrinho-Simões M, Soares P, Samuels DC, Máximo V, Pereira L. Genomic and transcriptomic characterization of the mitochondrial-rich oncocytic phenotype on a thyroid carcinoma background. Mitochondrion. PMID 29631022 DOI: 10.1016/J.Mito.2018.04.001 |
0.43 |
|
| 2018 |
Sun J, Brown TT, Samuels DC, Hulgan T, D'Souza G, Jamieson BD, Erlandson KM, Martinson J, Palella FJ, Margolick JB, Kirk GD, Schrack JA. The Role of Mitochondrial DNA Variation in Age-Related Decline in Gait Speed Among Older Men Living with HIV. Clinical Infectious Diseases : An Official Publication of the Infectious Diseases Society of America. PMID 29481608 DOI: 10.1093/Cid/Ciy151 |
0.336 |
|
| 2017 |
Zhao S, Samuels DC, Zhao YY, Guo Y. Tri-allelic heteroplasmies, DNA-RNA differences and their polynucleotide tract associations in the mitochondrial genome. Genomics. PMID 28970049 DOI: 10.1016/J.Ygeno.2017.09.013 |
0.413 |
|
| 2017 |
Zhang P, Lehmann BD, Samuels DC, Zhao S, Zhao YY, Shyr Y, Guo Y. Estimating relative mitochondrial DNA copy number using high throughput sequencing data. Genomics. PMID 28734953 DOI: 10.1016/J.Ygeno.2017.07.002 |
0.423 |
|
| 2016 |
Levinson RT, Hulgan T, Kalams SA, Fessel JP, Samuels DC. Mitochondrial Haplogroups as a Risk Factor for Herpes Zoster. Open Forum Infectious Diseases. 3: ofw184. PMID 27807590 DOI: 10.1093/Ofid/Ofw184 |
0.75 |
|
| 2016 |
Zhang P, Samuels DC, Zhao S, Wang J, Shyr Y, Guo Y. Practicability of Mitochondrial Heteroplasmy Detection through an Illumina Genotyping Array. Mitochondrion. PMID 27628068 DOI: 10.1016/J.Mito.2016.08.018 |
0.368 |
|
| 2016 |
Samuels DC, Wang J, Ye F, He J, Levinson RT, Sheng Q, Zhao S, Capra JA, Shyr Y, Zheng W, Guo Y. Heterozygosity Ratio, a Robust Global Genomic Measure of Autozygosity and Its Association with Height and Disease Risk. Genetics. PMID 27585849 DOI: 10.1534/Genetics.116.189936 |
0.703 |
|
| 2016 |
Gitschlag BL, Kirby CS, Samuels DC, Gangula RD, Mallal SA, Patel MR. Homeostatic Responses Regulate Selfish Mitochondrial Genome Dynamics in C. elegans. Cell Metabolism. 24: 91-103. PMID 27411011 DOI: 10.1016/J.Cmet.2016.06.008 |
0.444 |
|
| 2016 |
Zhang P, Samuels DC, Wang J, Zhao S, Shyr Y, Guo Y. Mitochondria single nucleotide variation across six blood cell types. Mitochondrion. PMID 26956645 DOI: 10.1016/J.Mito.2016.03.001 |
0.366 |
|
| 2016 |
Wilson IJ, Carling PJ, Alston CL, Floros VI, Pyle A, Hudson G, Sallevelt SC, Lamperti C, Carelli V, Bindoff LA, Samuels DC, Wonnapinij P, Zeviani M, Taylor RW, Smeets HJ, et al. Mitochondrial DNA Sequence Characteristics Modulate the Size of the Genetic Bottleneck. Human Molecular Genetics. PMID 26740552 DOI: 10.1093/Hmg/Ddv626 |
0.735 |
|
| 2015 |
Cavadas B, Soares P, Camacho R, Brandão A, Costa MD, Fernandes V, Pereira JB, Rito T, Samuels DC, Pereira L. Fine Time Scaling of Purifying Selection on Human Nonsynonymous mtDNA Mutations Based on the Worldwide Population Tree and Mother-Child Pairs. Human Mutation. 36: 1100-11. PMID 26252938 DOI: 10.1002/Humu.22849 |
0.345 |
|
| 2015 |
Zhang P, Samuels DC, Lehmann B, Stricker T, Pietenpol J, Shyr Y, Guo Y. Mitochondria sequence mapping strategies and practicability of mitochondria variant detection from exome and RNA sequencing data. Briefings in Bioinformatics. PMID 26249222 DOI: 10.1093/Bib/Bbv057 |
0.415 |
|
| 2015 |
Hulgan T, Samuels DC, Bush W, Ellis RJ, Letendre SL, Heaton RK, Franklin DR, Straub P, Murdock DG, Clifford DB, Collier AC, Gelman BB, Marra CM, McArthur JC, McCutchan JA, et al. Mitochondrial DNA Haplogroups and Neurocognitive Impairment during HIV Infection. Clinical Infectious Diseases : An Official Publication of the Infectious Diseases Society of America. PMID 26129753 DOI: 10.1093/Cid/Civ527 |
0.328 |
|
| 2015 |
Wang J, Raskin L, Samuels DC, Shyr Y, Guo Y. Genome measures used for quality control are dependent on gene function and ancestry. Bioinformatics (Oxford, England). 31: 318-23. PMID 25297068 DOI: 10.1093/Bioinformatics/Btu668 |
0.305 |
|
| 2015 |
Zhang P, Samuels DC, Lehmann B, Stricker T, Pietenpol J, Shyr Y, Guo Y. Practicality of identifying mitochondria variants from exome and RNAseq data Bmc Bioinformatics. 16: P6. DOI: 10.1186/1471-2105-16-S15-P6 |
0.339 |
|
| 2014 |
Pereira L, Soares P, Triska P, Rito T, van der Waerden A, Li B, Radivojac P, Samuels DC. Global human frequencies of predicted nuclear pathogenic variants and the role played by protein hydrophobicity in pathogenicity potential. Scientific Reports. 4: 7155. PMID 25412673 DOI: 10.1038/Srep07155 |
0.404 |
|
| 2014 |
Estopinal CB, Chocron IM, Parks MB, Wade EA, Roberson RM, Burgess LG, Brantley MA, Samuels DC. Mitochondrial haplogroups are associated with severity of diabetic retinopathy. Investigative Ophthalmology & Visual Science. 55: 5589-95. PMID 25118268 DOI: 10.1167/Iovs.14-15149 |
0.31 |
|
| 2014 |
Ye F, Samuels DC, Clark T, Guo Y. High-throughput sequencing in mitochondrial DNA research. Mitochondrion. 17: 157-63. PMID 24859348 DOI: 10.1016/J.Mito.2014.05.004 |
0.43 |
|
| 2014 |
Steffann J, Gigarel N, Samuels DC, Monnot S, Borghese R, Hesters L, Frydman N, Burlet P, Frydman R, Benachi A, Rotig A, Munnich A, Bonnefont JP. Data from artificial models of mitochondrial DNA disorders are not always applicable to humans. Cell Reports. 7: 933-4. PMID 24856293 DOI: 10.1016/J.Celrep.2014.05.005 |
0.462 |
|
| 2014 |
Hulgan T, Levinson RT, Gerschenson M, Phanuphak N, Ananworanich J, Teeratakulpisarm N, Jadwattanakul T, LiButti DE, Fink H, McArthur JC, Ebenezer GJ, Hauer P, Murdock D, Shikuma CM, Samuels DC, et al. Epidermal nerve fiber density, oxidative stress, and mitochondrial haplogroups in HIV-infected Thais initiating therapy. Aids (London, England). 28: 1625-33. PMID 24785954 DOI: 10.1097/Qad.0000000000000297 |
0.711 |
|
| 2014 |
Damas J, Samuels DC, Carneiro J, Amorim A, Pereira F. Mitochondrial DNA rearrangements in health and disease--a comprehensive study. Human Mutation. 35: 1-14. PMID 24115352 DOI: 10.1002/Humu.22452 |
0.435 |
|
| 2013 |
Samuels DC, Li C, Li B, Song Z, Torstenson E, Boyd Clay H, Rokas A, Thornton-Wells TA, Moore JH, Hughes TM, Hoffman RD, Haines JL, Murdock DG, Mortlock DP, Williams SM. Recurrent tissue-specific mtDNA mutations are common in humans. Plos Genetics. 9: e1003929. PMID 24244193 DOI: 10.1371/Journal.Pgen.1003929 |
0.709 |
|
| 2013 |
Soares P, Abrantes D, Rito T, Thomson N, Radivojac P, Li B, Macaulay V, Samuels DC, Pereira L. Evaluating purifying selection in the mitochondrial DNA of various mammalian species. Plos One. 8: e58993. PMID 23533597 DOI: 10.1371/Journal.Pone.0058993 |
0.405 |
|
| 2013 |
Guo Y, Li J, Li CI, Shyr Y, Samuels DC. MitoSeek: extracting mitochondria information and performing high-throughput mitochondria sequencing analysis. Bioinformatics (Oxford, England). 29: 1210-1. PMID 23471301 DOI: 10.1093/Bioinformatics/Btt118 |
0.408 |
|
| 2013 |
Sinxadi PZ, Dave JA, Samuels DC, Heckmann JM, Maartens G, Levitt NS, Wester CW, Haas DW, Hulgan T. Mitochondrial genomics and antiretroviral therapy-associated metabolic complications in HIV-infected Black South Africans: a pilot study. Aids Research and Human Retroviruses. 29: 1031-9. PMID 23428049 DOI: 10.1089/Aid.2012.0373 |
0.311 |
|
| 2013 |
Monnot S, Samuels DC, Hesters L, Frydman N, Gigarel N, Burlet P, Kerbrat V, Lamazou F, Frydman R, Benachi A, Feingold J, Rotig A, Munnich A, Bonnefont JP, Steffann J. Mutation dependance of the mitochondrial DNA copy number in the first stages of human embryogenesis. Human Molecular Genetics. 22: 1867-72. PMID 23390135 DOI: 10.1093/Hmg/Ddt040 |
0.443 |
|
| 2013 |
Samuels DC, Wonnapinij P, Chinnery PF. Preventing the transmission of pathogenic mitochondrial DNA mutations: Can we achieve long-term benefits from germ-line gene transfer? Human Reproduction (Oxford, England). 28: 554-9. PMID 23297368 DOI: 10.1093/Humrep/Des439 |
0.772 |
|
| 2013 |
Payne BA, Wilson IJ, Yu-Wai-Man P, Coxhead J, Deehan D, Horvath R, Taylor RW, Samuels DC, Santibanez-Koref M, Chinnery PF. Universal heteroplasmy of human mitochondrial DNA. Human Molecular Genetics. 22: 384-90. PMID 23077218 DOI: 10.1093/Hmg/Dds435 |
0.485 |
|
| 2013 |
Hudson G, Panoutsopoulou K, Wilson I, Southam L, Rayner NW, Arden N, Birrell F, Carluke I, Carr A, Chapman K, Deloukas P, Doherty M, McCaskie A, Ollier WE, Ralston SH, ... ... Samuels DC, et al. No evidence of an association between mitochondrial DNA variants and osteoarthritis in 7393 cases and 5122 controls. Annals of the Rheumatic Diseases. 72: 136-9. PMID 22984172 DOI: 10.1136/Annrheumdis-2012-201932 |
0.447 |
|
| 2012 |
Raap AK, Jahangir Tafrechi RS, van de Rijke FM, Pyle A, Wählby C, Szuhai K, Ravelli RB, de Coo RF, Rajasimha HK, Nilsson M, Chinnery PF, Samuels DC, Janssen GM. Non-random mtDNA segregation patterns indicate a metastable heteroplasmic segregation unit in m.3243A>G cybrid cells. Plos One. 7: e52080. PMID 23272214 DOI: 10.1371/Journal.Pone.0052080 |
0.778 |
|
| 2012 |
Neeve VC, Samuels DC, Bindoff LA, van den Bosch B, Van Goethem G, Smeets H, Lombès A, Jardel C, Hirano M, Dimauro S, De Vries M, Smeitink J, Smits BW, de Coo IF, Saft C, et al. What is influencing the phenotype of the common homozygous polymerase-γ mutation p.Ala467Thr? Brain : a Journal of Neurology. 135: 3614-26. PMID 23250882 DOI: 10.1093/Brain/Aws298 |
0.44 |
|
| 2012 |
Holzinger ER, Hulgan T, Ellis RJ, Samuels DC, Ritchie MD, Haas DW, Kallianpur AR, Bloss CS, Clifford DB, Collier AC, Gelman BB, Marra CM, McArthur JC, McCutchan JA, Morgello S, et al. Mitochondrial DNA variation and HIV-associated sensory neuropathy in CHARTER. Journal of Neurovirology. 18: 511-20. PMID 23073667 DOI: 10.1007/S13365-012-0133-Y |
0.363 |
|
| 2012 |
Freyer C, Cree LM, Mourier A, Stewart JB, Koolmeister C, Milenkovic D, Wai T, Floros VI, Hagström E, Chatzidaki EE, Wiesner RJ, Samuels DC, Larsson NG, Chinnery PF. Variation in germline mtDNA heteroplasmy is determined prenatally but modified during subsequent transmission. Nature Genetics. 44: 1282-5. PMID 23042113 DOI: 10.1038/Ng.2427 |
0.5 |
|
| 2012 |
Hulgan T, Robbins GK, Kalams SA, Samuels DC, Grady B, Shafer R, Murdock DG, Selph D, Haas DW, Pollard RB, de Gruttola V, Snyder S, Nevin T, Pettinelli C, Dube M, et al. T cell activation markers and African mitochondrial DNA Haplogroups among non-hispanic black participants in AIDS clinical trials group study 384 Plos One. 7. PMID 22970105 DOI: 10.1371/Journal.Pone.0043803 |
0.425 |
|
| 2012 |
Damas J, Carneiro J, Gonçalves J, Stewart JB, Samuels DC, Amorim A, Pereira F. Mitochondrial DNA deletions are associated with non-B DNA conformations. Nucleic Acids Research. 40: 7606-21. PMID 22661583 DOI: 10.1093/Nar/Gks500 |
0.469 |
|
| 2012 |
Hudson G, Wilson I, Payne BI, Elson J, Samuels DC, Santibanez-Korev M, Hall SJ, Chinnery PF. Unique mitochondrial DNA in highly inbred feral cattle. Mitochondrion. 12: 438-40. PMID 22609322 DOI: 10.1016/J.Mito.2012.05.003 |
0.449 |
|
| 2012 |
Pfeffer G, Blakely EL, Alston CL, Hassani A, Boggild M, Horvath R, Samuels DC, Taylor RW, Chinnery PF. Adult-onset spinocerebellar ataxia syndromes due to MTATP6 mutations. Journal of Neurology, Neurosurgery, and Psychiatry. 83: 883-6. PMID 22577227 DOI: 10.1136/Jnnp-2012-302568 |
0.33 |
|
| 2012 |
Guo Y, Cai Q, Samuels DC, Ye F, Long J, Li CI, Winther JF, Tawn EJ, Stovall M, Lähteenmäki P, Malila N, Levy S, Shaffer C, Shyr Y, Shu XO, et al. The use of next generation sequencing technology to study the effect of radiation therapy on mitochondrial DNA mutation. Mutation Research. 744: 154-60. PMID 22387842 DOI: 10.1016/J.Mrgentox.2012.02.006 |
0.418 |
|
| 2012 |
Gandhi VV, Samuels DC. Correlated tissue expression of genes of cytoplasmic and mitochondrial nucleotide metabolisms in normal tissues is disrupted in transformed tissues. Nucleosides, Nucleotides & Nucleic Acids. 31: 112-29. PMID 22303991 DOI: 10.1080/15257770.2011.644101 |
0.783 |
|
| 2012 |
Pereira L, Soares P, Máximo V, Samuels DC. Somatic mitochondrial DNA mutations in cancer escape purifying selection and high pathogenicity mutations lead to the oncocytic phenotype: pathogenicity analysis of reported somatic mtDNA mutations in tumors. Bmc Cancer. 12: 53. PMID 22299657 DOI: 10.1186/1471-2407-12-53 |
0.426 |
|
| 2012 |
Chinnery PF, Elliott HR, Hudson G, Samuels DC, Relton CL. Epigenetics, epidemiology and mitochondrial DNA diseases. International Journal of Epidemiology. 41: 177-87. PMID 22287136 DOI: 10.1093/Ije/Dyr232 |
0.449 |
|
| 2011 |
Song Z, Cao Y, Samuels DC. Replication pauses of the wild-type and mutant mitochondrial DNA polymerase gamma: a simulation study. Plos Computational Biology. 7: e1002287. PMID 22125488 DOI: 10.1371/Journal.Pcbi.1002287 |
0.712 |
|
| 2011 |
Gandhi VV, Samuels DC. Enzyme kinetics of the mitochondrial deoxyribonucleoside salvage pathway are not sufficient to support rapid mtDNA replication. Plos Computational Biology. 7: e1002078. PMID 21829339 DOI: 10.1371/Journal.Pcbi.1002078 |
0.802 |
|
| 2011 |
Grady BJ, Samuels DC, Robbins GK, Selph D, Canter JA, Pollard RB, Haas DW, Shafer R, Kalams SA, Murdock DG, Ritchie MD, Hulgan T. Mitochondrial genomics and CD4 T-cell count recovery after antiretroviral therapy initiation in AIDS clinical trials group study 384 Journal of Acquired Immune Deficiency Syndromes. 58: 363-370. PMID 21792066 DOI: 10.1097/Qai.0B013E31822C688B |
0.42 |
|
| 2011 |
Gandhi VV, Samuels DC. A review comparing deoxyribonucleoside triphosphate (dNTP) concentrations in the mitochondrial and cytoplasmic compartments of normal and transformed cells. Nucleosides, Nucleotides & Nucleic Acids. 30: 317-39. PMID 21774628 DOI: 10.1080/15257770.2011.586955 |
0.802 |
|
| 2011 |
Payne BA, Wilson IJ, Hateley CA, Horvath R, Santibanez-Koref M, Samuels DC, Price DA, Chinnery PF. Mitochondrial aging is accelerated by anti-retroviral therapy through the clonal expansion of mtDNA mutations. Nature Genetics. 43: 806-10. PMID 21706004 DOI: 10.1038/Ng.863 |
0.446 |
|
| 2011 |
Gigarel N, Hesters L, Samuels DC, Monnot S, Burlet P, Kerbrat V, Lamazou F, Benachi A, Frydman R, Feingold J, Rotig A, Munnich A, Bonnefont JP, Frydman N, Steffann J. Poor correlations in the levels of pathogenic mitochondrial DNA mutations in polar bodies versus oocytes and blastomeres in humans. American Journal of Human Genetics. 88: 494-8. PMID 21473984 DOI: 10.1016/J.Ajhg.2011.03.010 |
0.391 |
|
| 2011 |
Pereira L, Soares P, Radivojac P, Li B, Samuels DC. Comparing phylogeny and the predicted pathogenicity of protein variations reveals equal purifying selection across the global human mtDNA diversity. American Journal of Human Genetics. 88: 433-9. PMID 21457906 DOI: 10.1016/J.Ajhg.2011.03.006 |
0.345 |
|
| 2011 |
Stewart JD, Schoeler S, Sitarz KS, Horvath R, Hallmann K, Pyle A, Yu-Wai-Man P, Taylor RW, Samuels DC, Kunz WS, Chinnery PF. POLG mutations cause decreased mitochondrial DNA repopulation rates following induced depletion in human fibroblasts. Biochimica Et Biophysica Acta. 1812: 321-5. PMID 21138766 DOI: 10.1016/J.Bbadis.2010.11.012 |
0.441 |
|
| 2011 |
Howells CC, Baumann WT, Samuels DC, Finkielstein CV. The Bcl-2-associated death promoter (BAD) lowers the threshold at which the Bcl-2-interacting domain death agonist (BID) triggers mitochondria disintegration. Journal of Theoretical Biology. 271: 114-23. PMID 21130780 DOI: 10.1016/J.Jtbi.2010.11.040 |
0.303 |
|
| 2011 |
Monnot S, Gigarel N, Samuels DC, Burlet P, Hesters L, Frydman N, Frydman R, Kerbrat V, Funalot B, Martinovic J, Benachi A, Feingold J, Munnich A, Bonnefont JP, Steffann J. Segregation of mtDNA throughout human embryofetal development: m.3243A>G as a model system. Human Mutation. 32: 116-25. PMID 21120938 DOI: 10.1002/Humu.21417 |
0.401 |
|
| 2010 |
Samuels DC, Wonnapinij P, Cree LM, Chinnery PF. Reassessing evidence for a postnatal mitochondrial genetic bottleneck. Nature Genetics. 42: 471-2; author reply . PMID 20502486 DOI: 10.1038/Ng0610-471 |
0.754 |
|
| 2010 |
Yu-Wai-Man P, Sitarz KS, Samuels DC, Griffiths PG, Reeve AK, Bindoff LA, Horvath R, Chinnery PF. OPA1 mutations cause cytochrome c oxidase deficiency due to loss of wild-type mtDNA molecules. Human Molecular Genetics. 19: 3043-52. PMID 20484224 DOI: 10.1093/Hmg/Ddq209 |
0.43 |
|
| 2010 |
Wonnapinij P, Chinnery PF, Samuels DC. Previous estimates of mitochondrial DNA mutation level variance did not account for sampling error: comparing the mtDNA genetic bottleneck in mice and humans. American Journal of Human Genetics. 86: 540-50. PMID 20362273 DOI: 10.1016/J.Ajhg.2010.02.023 |
0.735 |
|
| 2010 |
Song Z, Samuels DC. Analysis of enzyme kinetic data for mtDNA replication. Methods (San Diego, Calif.). 51: 385-91. PMID 20188839 DOI: 10.1016/J.Ymeth.2010.02.019 |
0.708 |
|
| 2010 |
Marchington D, Malik S, Banerjee A, Turner K, Samuels D, Macaulay V, Oakeshott P, Fratter C, Kennedy S, Poulton J. Information for genetic management of mtDNA disease: sampling pathogenic mtDNA mutants in the human germline and in placenta. Journal of Medical Genetics. 47: 257-61. PMID 19914907 DOI: 10.1136/Jmg.2009.072900 |
0.435 |
|
| 2010 |
Payne B, Hateley C, Samuels D, Wilson I, Santibanez-Koref M, Price D, Chinnery P. Mitochondrial ageing and antiretroviral therapy exposure Journal of the International Aids Society. 13: 1-1. DOI: 10.1186/1758-2652-13-S4-O28 |
0.374 |
|
| 2009 |
Samuels DC, Burn DJ, Chinnery PF. Detecting new neurodegenerative disease genes: does phenotype accuracy limit the horizon? Trends in Genetics : Tig. 25: 486-8. PMID 19819581 DOI: 10.1016/J.Tig.2009.09.008 |
0.304 |
|
| 2009 |
Pereira L, Freitas F, Fernandes V, Pereira JB, Costa MD, Costa S, Máximo V, Macaulay V, Rocha R, Samuels DC. The diversity present in 5140 human mitochondrial genomes. American Journal of Human Genetics. 84: 628-40. PMID 19426953 DOI: 10.1016/J.Ajhg.2009.04.013 |
0.44 |
|
| 2009 |
Cree LM, Samuels DC, Chinnery PF. The inheritance of pathogenic mitochondrial DNA mutations. Biochimica Et Biophysica Acta. 1792: 1097-102. PMID 19303927 DOI: 10.1016/J.Bbadis.2009.03.002 |
0.461 |
|
| 2009 |
Wendelsdorf KV, Song Z, Cao Y, Samuels DC. An analysis of enzyme kinetics data for mitochondrial DNA strand termination by nucleoside reverse transcription inhibitors. Plos Computational Biology. 5: e1000261. PMID 19132079 DOI: 10.1371/Journal.Pcbi.1000261 |
0.745 |
|
| 2009 |
Guan X, Silva P, Gyenai KB, Xu J, Geng T, Tu Z, Samuels DC, Smith EJ. The mitochondrial genome sequence and molecular phylogeny of the turkey, Meleagris gallopavo. Animal Genetics. 40: 134-41. PMID 19067672 DOI: 10.1111/J.1365-2052.2008.01810.X |
0.335 |
|
| 2009 |
Pereira L, Samuels DC. Response to Yao et al American Journal of Human Genetics. 85: 933. DOI: 10.1016/J.Ajhg.2009.10.022 |
0.313 |
|
| 2008 |
Wonnapinij P, Chinnery PF, Samuels DC. The distribution of mitochondrial DNA heteroplasmy due to random genetic drift. American Journal of Human Genetics. 83: 582-93. PMID 18976726 DOI: 10.1016/J.Ajhg.2008.10.007 |
0.774 |
|
| 2008 |
Pereira F, Soares P, Carneiro J, Pereira L, Richards MB, Samuels DC, Amorim A. Evidence for variable selective pressures at a large secondary structure of the human mitochondrial DNA control region. Molecular Biology and Evolution. 25: 2759-70. PMID 18845547 DOI: 10.1093/Molbev/Msn225 |
0.4 |
|
| 2008 |
Elliott HR, Samuels DC, Eden JA, Relton CL, Chinnery PF. Pathogenic mitochondrial DNA mutations are common in the general population. American Journal of Human Genetics. 83: 254-60. PMID 18674747 DOI: 10.1016/J.Ajhg.2008.07.004 |
0.424 |
|
| 2008 |
Krishnan KJ, Reeve AK, Samuels DC, Chinnery PF, Blackwood JK, Taylor RW, Wanrooij S, Spelbrink JN, Lightowlers RN, Turnbull DM. What causes mitochondrial DNA deletions in human cells? Nature Genetics. 40: 275-9. PMID 18305478 DOI: 10.1038/Ng.F.94 |
0.483 |
|
| 2008 |
Kang J, Samuels DC. The evidence that the DNC (SLC25A19) is not the mitochondrial deoxyribonucleotide carrier. Mitochondrion. 8: 103-8. PMID 18280798 DOI: 10.1016/J.Mito.2008.01.001 |
0.461 |
|
| 2008 |
Rajasimha HK, Chinnery PF, Samuels DC. Selection against pathogenic mtDNA mutations in a stem cell population leads to the loss of the 3243A-->G mutation in blood. American Journal of Human Genetics. 82: 333-43. PMID 18252214 DOI: 10.1016/J.Ajhg.2007.10.007 |
0.778 |
|
| 2008 |
Cree LM, Samuels DC, de Sousa Lopes SC, Rajasimha HK, Wonnapinij P, Mann JR, Dahl HH, Chinnery PF. A reduction of mitochondrial DNA molecules during embryogenesis explains the rapid segregation of genotypes. Nature Genetics. 40: 249-54. PMID 18223651 DOI: 10.1038/Ng.2007.63 |
0.803 |
|
| 2007 |
Durham SE, Samuels DC, Cree LM, Chinnery PF. Normal levels of wild-type mitochondrial DNA maintain cytochrome c oxidase activity for two pathogenic mitochondrial DNA mutations but not for m.3243A-->G. American Journal of Human Genetics. 81: 189-95. PMID 17564976 DOI: 10.1086/518901 |
0.428 |
|
| 2007 |
Pyle A, Taylor RW, Durham SE, Deschauer M, Schaefer AM, Samuels DC, Chinnery PF. Depletion of mitochondrial DNA in leucocytes harbouring the 3243A->G mtDNA mutation. Journal of Medical Genetics. 44: 69-74. PMID 16950816 DOI: 10.1136/Jmg.2006.043109 |
0.445 |
|
| 2006 |
Samuels DC. Mitochondrial AZT metabolism. Iubmb Life. 58: 403-8. PMID 16801215 DOI: 10.1080/15216540600791571 |
0.425 |
|
| 2006 |
Durham SE, Samuels DC, Chinnery PF. Is selection required for the accumulation of somatic mitochondrial DNA mutations in post-mitotic cells? Neuromuscular Disorders : Nmd. 16: 381-6. PMID 16684599 DOI: 10.1016/J.Nmd.2006.03.012 |
0.472 |
|
| 2006 |
Samuels DC, Carothers AD, Horton R, Chinnery PF. The power to detect disease associations with mitochondrial DNA haplogroups. American Journal of Human Genetics. 78: 713-20. PMID 16532401 DOI: 10.1086/502682 |
0.411 |
|
| 2005 |
Bradshaw PC, Rathi A, Samuels DC. Mitochondrial-encoded membrane protein transcripts are pyrimidine-rich while soluble protein transcripts and ribosomal RNA are purine-rich. Bmc Genomics. 6: 136. PMID 16185363 DOI: 10.1186/1471-2164-6-136 |
0.712 |
|
| 2005 |
Durham SE, Bonilla E, Samuels DC, DiMauro S, Chinnery PF. Mitochondrial DNA copy number threshold in mtDNA depletion myopathy. Neurology. 65: 453-5. PMID 16087914 DOI: 10.1212/01.Wnl.0000171861.30277.88 |
0.421 |
|
| 2005 |
Bradshaw PC, Li J, Samuels DC. A computational model of mitochondrial AZT metabolism. The Biochemical Journal. 392: 363-73. PMID 16060859 DOI: 10.1042/Bj20050749 |
0.716 |
|
| 2005 |
Samuels DC. Life span is related to the free energy of mitochondrial DNA. Mechanisms of Ageing and Development. 126: 1123-9. PMID 15992863 DOI: 10.1016/J.Mad.2005.05.003 |
0.445 |
|
| 2005 |
Bradshaw PC, Samuels DC. A computational model of mitochondrial deoxynucleotide metabolism and DNA replication. American Journal of Physiology. Cell Physiology. 288: C989-1002. PMID 15634740 DOI: 10.1152/Ajpcell.00530.2004 |
0.719 |
|
| 2004 |
Samuels DC, Schon EA, Chinnery PF. Two direct repeats cause most human mtDNA deletions. Trends in Genetics : Tig. 20: 393-8. PMID 15313545 DOI: 10.1016/J.Tig.2004.07.003 |
0.472 |
|
| 2004 |
Samuels DC. Mitochondrial DNA repeats constrain the life span of mammals. Trends in Genetics : Tig. 20: 226-9. PMID 15109774 DOI: 10.1016/J.Tig.2004.03.003 |
0.413 |
|
| 2003 |
Taylor RW, Barron MJ, Borthwick GM, Gospel A, Chinnery PF, Samuels DC, Taylor GA, Plusa SM, Needham SJ, Greaves LC, Kirkwood TB, Turnbull DM. Mitochondrial DNA mutations in human colonic crypt stem cells. The Journal of Clinical Investigation. 112: 1351-60. PMID 14597761 DOI: 10.1172/Jci19435 |
0.466 |
|
| 2003 |
Samuels DC, Boys RJ, Henderson DA, Chinnery PF. A compositional segmentation of the human mitochondrial genome is related to heterogeneities in the guanine mutation rate. Nucleic Acids Research. 31: 6043-52. PMID 14530452 DOI: 10.1093/Nar/Gkg784 |
0.395 |
|
| 2003 |
Capps GJ, Samuels DC, Chinnery PF. A model of the nuclear control of mitochondrial DNA replication. Journal of Theoretical Biology. 221: 565-83. PMID 12713941 DOI: 10.1006/Jtbi.2003.3207 |
0.471 |
|
| 2002 |
Barenghi CF, Hulton S, Samuels DC. Polarization of superfluid turbulence. Physical Review Letters. 89: 275301. PMID 12513214 DOI: 10.1103/Physrevlett.89.275301 |
0.728 |
|
| 2002 |
Chinnery PF, Samuels DC, Elson J, Turnbull DM. Accumulation of mitochondrial DNA mutations in ageing, cancer, and mitochondrial disease: is there a common mechanism? Lancet (London, England). 360: 1323-5. PMID 12414225 DOI: 10.1016/S0140-6736(02)11310-9 |
0.486 |
|
| 2002 |
Elson JL, Samuels DC, Johnson MA, Turnbull DM, Chinnery PF. The length of cytochrome c oxidase-negative segments in muscle fibres in patients with mtDNA myopathy. Neuromuscular Disorders : Nmd. 12: 858-64. PMID 12398838 DOI: 10.1016/S0960-8966(02)00047-0 |
0.338 |
|
| 2002 |
Barenghi CF, Samuels DC. Evaporation of a packet of quantized vorticity. Physical Review Letters. 89: 155302. PMID 12365997 DOI: 10.1103/Physrevlett.89.155302 |
0.721 |
|
| 2001 |
Elson JL, Samuels DC, Turnbull DM, Chinnery PF. Random intracellular drift explains the clonal expansion of mitochondrial DNA mutations with age. American Journal of Human Genetics. 68: 802-6. PMID 11179029 DOI: 10.1086/318801 |
0.484 |
|
| 2000 |
Brown DT, Samuels DC, Michael EM, Turnbull DM, Chinnery PF. Random genetic drift determines the level of mutant mtDNA in human primary oocytes. American Journal of Human Genetics. 68: 533-6. PMID 11133360 DOI: 10.1086/318190 |
0.37 |
|
| 2000 |
Chinnery PF, Thorburn DR, Samuels DC, White SL, Dahl HM, Turnbull DM, Lightowlers RN, Howell N. The inheritance of mitochondrial DNA heteroplasmy: random drift, selection or both? Trends in Genetics : Tig. 16: 500-5. PMID 11074292 DOI: 10.1016/S0168-9525(00)02120-X |
0.497 |
|
| 2000 |
Chinnery PF, Samuels DC. Relaxed replication of mtDNA: A model with implications for the expression of disease. American Journal of Human Genetics. 64: 1158-65. PMID 10090901 DOI: 10.1086/302311 |
0.423 |
|
| 1997 |
Barenghi CF, Samuels DC, Bauer GH, Donnelly RJ. Superfluid vortex lines in a model of turbulent flow Physics of Fluids. 9: 2631-2643. DOI: 10.1063/1.869379 |
0.499 |
|
| 1996 |
Barenghi CF, Bauer GH, Samuels DC, Donnelly RJ. A numerical investigation of vortex-coupled superfluidity Czechoslovak Journal of Physics. 46: 29-30. DOI: 10.1007/Bf02569430 |
0.492 |
|
| 1994 |
Bauer GH, Samuels DC, Donnelly RJ. Momentum statistics of interacting rotons Physica B: Physics of Condensed Matter. 194: 519-520. DOI: 10.1016/0921-4526(94)90589-4 |
0.473 |
|
| 1991 |
Samuels DC, Donnelly RJ. Motion of charged vortex rings in helium II. Physical Review Letters. 67: 2505-2508. PMID 10044443 DOI: 10.1103/Physrevlett.67.2505 |
0.47 |
|
| 1991 |
Wiener RJ, Hammer PW, Swanson CE, Samuels DC, Donnelly RJ. The effect of a coriolis force on Taylor-Couette flow Journal of Statistical Physics. 64: 913-926. DOI: 10.1007/Bf01048804 |
0.491 |
|
| 1990 |
Samuels DC, Donnelly RJ. Dynamics of the interactions of rotons with quantized vortices in helium II. Physical Review Letters. 65: 187-190. PMID 10042575 DOI: 10.1103/Physrevlett.65.187 |
0.483 |
|
| 1990 |
Samuels DC, Donnelly RJ. Sideband instability and recurrence of Kelvin waves on vortex cores. Physical Review Letters. 64: 1385-1388. PMID 10041382 DOI: 10.1103/Physrevlett.64.1385 |
0.464 |
|
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