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Arnold Stein - Publications

Affiliations: 
Biological Sciences Purdue University, West Lafayette, IN, United States 
Area:
gene regulation
Website:
http://www.bio.purdue.edu/molecular_biosciences/directory.php?refID=32
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47 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2014 Takasuka TE, Hsieh YJ, Stein A. Miniaturized sequencing gel system for quick analysis of DNA by hydroxyl radical cleavage. Applied Biochemistry and Biotechnology. 172: 1-8. PMID 24043455 DOI: 10.1007/S12010-013-0512-8  0.725
2013 Shah K, Thomas S, Stein A. Affordable hands-on DNA sequencing and genotyping: an exercise for teaching DNA analysis to undergraduates. Biochemistry and Molecular Biology Education : a Bimonthly Publication of the International Union of Biochemistry and Molecular Biology. 41: 388-95. PMID 24019265 DOI: 10.1002/bmb.20732  0.344
2010 Stein A. Nucleosome positioning, gene regulation and disease. Epigenomics. 2: 351-4. PMID 22121895 DOI: 10.2217/Epi.10.23  0.434
2010 Takasuka TE, Stein A. Direct measurements of the nucleosome-forming preferences of periodic DNA motifs challenge established models. Nucleic Acids Research. 38: 5672-80. PMID 20460457 DOI: 10.1093/Nar/Gkq279  0.766
2010 Stein A, Takasuka TE, Collings CK. Are nucleosome positions in vivo primarily determined by histone-DNA sequence preferences? Nucleic Acids Research. 38: 709-19. PMID 19934265 DOI: 10.1093/Nar/Gkp1043  0.758
2008 Takasuka TE, Cioffi A, Stein A. Sequence information encoded in DNA that may influence long-range chromatin structure correlates with human chromosome functions. Plos One. 3: e2643. PMID 18612465 DOI: 10.1371/Journal.Pone.0002643  0.782
2006 Fleury TJ, Cioffi A, Stein A. Detecting nucleosome ladders on unique DNA sequences in mouse liver nuclei. Methods in Molecular Biology (Clifton, N.J.). 338: 209-24. PMID 16888361 DOI: 10.1385/1-59745-097-9:209  0.714
2006 Cioffi A, Fleury TJ, Stein A. Aspects of large-scale chromatin structures in mouse liver nuclei can be predicted from the DNA sequence. Nucleic Acids Research. 34: 1974-81. PMID 16614447 DOI: 10.1093/Nar/Gkl078  0.709
2005 Fan Y, Nikitina T, Zhao J, Fleury TJ, Bhattacharyya R, Bouhassira EE, Stein A, Woodcock CL, Skoultchi AI. Histone H1 depletion in mammals alters global chromatin structure but causes specific changes in gene regulation. Cell. 123: 1199-212. PMID 16377562 DOI: 10.1016/J.Cell.2005.10.028  0.43
2005 Dalal Y, Fleury TJ, Cioffi A, Stein A. Long-range oscillation in a periodic DNA sequence motif may influence nucleosome array formation. Nucleic Acids Research. 33: 934-45. PMID 15716311 DOI: 10.1093/Nar/Gki224  0.783
2004 Bina M, Wyss P, Ren W, Szpankowski W, Thomas E, Randhawa R, Reddy S, John PM, Pares-Matos EI, Stein A, Xu H, Lazarus SA. Exploring the characteristics of sequence elements in proximal promoters of human genes. Genomics. 84: 929-40. PMID 15533710 DOI: 10.1016/J.Ygeno.2004.08.013  0.533
2004 Cioffi A, Dalal Y, Stein A. DNA sequence alterations affect nucleosome array formation of the chicken ovalbumin gene. Biochemistry. 43: 6709-22. PMID 15157105 DOI: 10.1021/Bi049717F  0.79
2002 Stein A, Dalal Y, Fleury TJ. Circle ligation of in vitro assembled chromatin indicates a highly flexible structure. Nucleic Acids Research. 30: 5103-9. PMID 12466533 DOI: 10.1093/Nar/Gkf671  0.738
1999 Stein A, Bina M. A signal encoded in vertebrate DNA that influences nucleosome positioning and alignment. Nucleic Acids Research. 27: 848-53. PMID 9889282 DOI: 10.1093/Nar/27.3.848  0.697
1998 Stein A, Hill SA, Cheng Z, Bina M. Simple miniaturized gel system for DNA sequence analysis. Nucleic Acids Research. 26: 452-5. PMID 9421499 DOI: 10.1093/Nar/26.2.452  0.627
1997 Shin BS, Stein A, Zalkin H. Interaction of Bacillus subtilis purine repressor with DNA Journal of Bacteriology. 179: 7394-7402. PMID 9393704 DOI: 10.1128/Jb.179.23.7394-7402.1997  0.429
1997 Liu K, Stein A. DNA sequence encodes information for nucleosome array formation. Journal of Molecular Biology. 270: 559-73. PMID 9245587 DOI: 10.1006/Jmbi.1997.1136  0.55
1996 Stein A. Signals in eukaryotic DNA promote and influence formation of nucleosome arrays Progress in Nucleic Acid Research and Molecular Biology. 54: 333-381. PMID 8768079 DOI: 10.1016/S0079-6603(08)60367-0  0.56
1995 Liu K, Sandgren EP, Palmiter RD, Stein A. Rat growth hormone gene introns stimulate nucleosome alignment in vitro and in transgenic mice. Proceedings of the National Academy of Sciences of the United States of America. 92: 7724-8. PMID 7644484 DOI: 10.1073/Pnas.92.17.7724  0.434
1994 Liu K, Lauderdale JD, Stein A. Signals in chicken beta-globin DNA influence chromatin assembly in vitro. Molecular and Cellular Biology. 13: 7596-603. PMID 8246976 DOI: 10.1128/Mcb.13.12.7596  0.46
1994 Jeong S, Stein A. Micrococcal nuclease digestion of nuclei reveals extended nucleosome ladders having anomalous DNA lengths for chromatin assembled on non-replicating plasmids in transfected cells Nucleic Acids Research. 22: 370-375. PMID 7510391 DOI: 10.1093/Nar/22.3.370  0.551
1993 Lauderdale JD, Stein A. Effects of plasmid length and positioned nucleosomes on chromatin assembly in vitro. Biochemistry. 32: 489-99. PMID 8422358 DOI: 10.1021/Bi00053A013  0.461
1993 Lauderdale JD, Stein A. Introns of the chicken ovalbumin gene promote nucleosome alignment in vitro. Nucleic Acids Research. 20: 6589-96. PMID 1480479 DOI: 10.1093/Nar/20.24.6589  0.493
1992 Jeong SW, Lauderdale JD, Stein A. Chromatin assembly on plasmid DNA in vitro. Apparent spreading of nucleosome alignment from one region of pBR327 by histone H5. Journal of Molecular Biology. 222: 1131-47. PMID 1662288 DOI: 10.1016/0022-2836(91)90597-Y  0.515
1989 Stein A. Reconstitution of chromatin from purified components Methods in Enzymology. 170: 585-603. PMID 2770553 DOI: 10.1016/0076-6879(89)70066-5  0.454
1989 Stein AM, Gratzner HG, Stein JH, McCabe MM. High avidity monoclonal antibody to imidazole ring-opened 7-methylguanine Carcinogenesis. 10: 927-931. PMID 2468429 DOI: 10.1093/carcin/10.5.927  0.3
1989 Stein A, Mitchell M. Generation of different nucleosome spacing periodicities in vitro. Possible origin of cell type specificity. Journal of Molecular Biology. 203: 1029-43. PMID 2463368 DOI: 10.1016/0022-2836(88)90127-1  0.435
1986 Blasquez V, Stein A, Ambrose C, Bina M. Simian virus 40 protein VP1 is involved in spacing nucleosomes in minichromosomes. Journal of Molecular Biology. 191: 97-106. PMID 3025457 DOI: 10.1016/0022-2836(86)90425-0  0.619
1985 Stein A, Holley K, Zeliff J, Townsend T. Interactions between core histones and chromatin at physiological ionic strength. Biochemistry. 24: 1783-90. PMID 2408664 DOI: 10.1021/Bi00328A032  0.453
1984 Stein A, Bina M. A model chromatin assembly system. Factors affecting nucleosome spacing. Journal of Molecular Biology. 178: 341-63. PMID 6208368 DOI: 10.1016/0022-2836(84)90148-7  0.619
1983 Künzler P, Stein A. Histone H5 can increase the internucleosome spacing in dinucleosomes to nativelike values. Biochemistry. 22: 1783-9. PMID 6849886 DOI: 10.1021/Bi00277A007  0.386
1983 Stein A, Künzler P. Histone H5 can correctly align randomly arranged nucleosomes in a defined in vitro system. Nature. 302: 548-50. PMID 6835386 DOI: 10.1038/302548A0  0.447
1983 Stein A, Townsend T. HMG 14/17 binding affinities and DNAase I sensitivities of nucleoprotein particles. Nucleic Acids Research. 11: 6803-19. PMID 6226937 DOI: 10.1093/Nar/11.19.6803  0.529
1980 Bina M, Sturtevant JM, Stein A. Stability of DNA in nucleosomes. Proceedings of the National Academy of Sciences of the United States of America. 77: 4044-7. PMID 6933452 DOI: 10.1073/Pnas.77.7.4044  0.622
1980 Stein A. DNA wrapping in nucleosomes. The linking number problem re-examined Nucleic Acids Research. 8: 4803-4820. PMID 6255433 DOI: 10.1093/Nar/8.20.4803  0.537
1980 Simpson RT, Stein A. Random protection of single cut restriction endonuclease sites in SV40 mini-chromosomes assembled in vitro. Febs Letters. 111: 337-9. PMID 6244189 DOI: 10.1016/0014-5793(80)80822-2  0.69
1979 Stein A. DNA folding by histones: The kinetics of chromatin core particle reassembly and the interaction of nucleosomes with histones Journal of Molecular Biology. 130: 103-134. PMID 469938 DOI: 10.1016/0022-2836(79)90421-2  0.479
1979 Stein A, Whitlock JP, Bina M. Acidic polypeptides can assemble both histones and chromatin in vitro at physiological ionic strength. Proceedings of the National Academy of Sciences of the United States of America. 76: 5000-4. PMID 291918 DOI: 10.1073/Pnas.76.10.5000  0.57
1978 Whitlock JP, Stein A. Folding of DNA by histones which lack their NH2-terminal regions Journal of Biological Chemistry. 253: 3857-3861. PMID 649610  0.396
1978 Simpson RT, Whitlock JP, Bina-Stein M, Stein A. Histone-DNA interactions in chromatin core particles. Cold Spring Harbor Symposia On Quantitative Biology. 42: 127-36. PMID 209935 DOI: 10.1101/Sqb.1978.042.01.014  0.615
1977 Stein A, Bina-Stein M, Simpson RT. Crosslinked histone octamer as a model of the nucleosome core. Proceedings of the National Academy of Sciences of the United States of America. 74: 2780-4. PMID 197520 DOI: 10.1073/Pnas.74.7.2780  0.635
1976 Stein A, Crothers DM. Conformational changes of transfer RNA. The role of magnesium(II). Biochemistry. 15: 160-8. PMID 764858  0.42
1976 Stein A, Crothers DM. Equilibrium binding of magnesium(II) by Escherichia coli tRNAfMet. Biochemistry. 15: 157-60. PMID 764857  0.413
1973 Stein A, Allen GF. An Analysis of Coexistence Curve Data for Several Binary Liquid Mixtures Near Their Critical Points Journal of Physical and Chemical Reference Data. 2: 443-466. DOI: 10.1063/1.3253124  0.61
1972 Stein A, Allen GF. Temperature dependence of the electrical resistance for isobutyric acid-water near the critical point Physical Review Letters. 29: 1236-1240. DOI: 10.1103/Physrevlett.29.1236  0.607
1971 Stein A, Allegra JC, Allen GF. Shear Viscosity of 3‐Methylpentane—Nitroethane near the Critical Point The Journal of Chemical Physics. 55: 4265-4269. DOI: 10.1063/1.1676745  0.621
1971 Allegra JC, Stein A, Allen GF. Tracer diffusion and shear viscosity for the system isobutyric acid-water near the critical mixing point The Journal of Chemical Physics. 55: 1716-1720. DOI: 10.1063/1.1676301  0.616
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