Mark A. Musen - Publications

Affiliations: 
Stanford University, Palo Alto, CA 
Area:
Health Sciences

110 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Tu SW, Nyulas CI, Tudorache T, Musen MA, Martinuzzi A, van Gool C, Mea VD, Chute CG, Frattura L, Hardiker N, Napel HT, Madden R, Almborg AH, Ginige JA, Sykes C, et al. Toward a Harmonized WHO Family of International Classifications Content Model. Studies in Health Technology and Informatics. 270: 1409-1410. PMID 32570683 DOI: 10.3233/SHTI200466  0.32
2019 O'Connor MJ, Warzel DB, Martínez-Romero M, Hardi J, Willrett D, Egyedi AL, Eftekhari A, Graybeal J, Musen MA. Unleashing the value of Common Data Elements through the CEDAR Workbench. Amia ... Annual Symposium Proceedings. Amia Symposium. 2019: 681-690. PMID 32308863  0.32
2019 Martínez-Romero M, O'Connor MJ, Egyedi AL, Willrett D, Hardi J, Graybeal J, Musen MA. Using association rule mining and ontologies to generate metadata recommendations from multiple biomedical databases. Database : the Journal of Biological Databases and Curation. 2019. PMID 31210270 DOI: 10.1093/database/baz059  0.32
2018 Bukhari SAC, O'Connor MJ, Martínez-Romero M, Egyedi AL, Willrett D, Graybeal J, Musen MA, Rubelt F, Cheung KH, Kleinstein SH. The CAIRR Pipeline for Submitting Standards-Compliant B and T Cell Receptor Repertoire Sequencing Studies to the National Center for Biotechnology Information Repositories. Frontiers in Immunology. 9: 1877. PMID 30166985 DOI: 10.3389/fimmu.2018.01877  0.32
2017 Gonçalves RS, O'Connor MJ, Martínez-Romero M, Egyedi AL, Willrett D, Graybeal J, Musen MA. The CEDAR Workbench: An Ontology-Assisted Environment for Authoring Metadata that Describe Scientific Experiments. The Semantic Web--Iswc ... : ... International Semantic Web Conference ... Proceedings. International Semantic Web Conference. 10588: 103-110. PMID 32219223 DOI: 10.1007/978-3-319-68204-4_10  0.32
2017 Martínez-Romero M, O'Connor MJ, Shankar RD, Panahiazar M, Willrett D, Egyedi AL, Gevaert O, Graybeal J, Musen MA. Fast and Accurate Metadata Authoring Using Ontology-Based Recommendations. Amia ... Annual Symposium Proceedings. Amia Symposium. 2017: 1272-1281. PMID 29854196  0.32
2017 Tso GJ, Tu SW, Musen MA, Goldstein MK. High-Risk Drug-Drug Interactions Between Clinical Practice Guidelines for Management of Chronic Conditions. Amia Joint Summits On Translational Science Proceedings. Amia Joint Summits On Translational Science. 2017: 531-539. PMID 28815153  0.32
2017 Gonçalves RS, Tu SW, Nyulas CI, Tierney MJ, Musen MA. An ontology-driven tool for structured data acquisition using Web forms. Journal of Biomedical Semantics. 8: 26. PMID 28764813 DOI: 10.1186/s13326-017-0133-1  0.32
2017 Martínez-Romero M, Jonquet C, O'Connor MJ, Graybeal J, Pazos A, Musen MA. NCBO Ontology Recommender 2.0: an enhanced approach for biomedical ontology recommendation. Journal of Biomedical Semantics. 8: 21. PMID 28592275 DOI: 10.1186/s13326-017-0128-y  0.32
2017 Lou Y, Tu SW, Nyulas C, Tudorache T, Chalmers RJ, Musen MA. Use of Ontology Structure and Bayesian Models to Aid the Crowdsourcing of ICD-11 Sanctioning Rules. Journal of Biomedical Informatics. PMID 28192233 DOI: 10.1016/j.jbi.2017.02.004  0.4
2016 Mortensen JM, Telis N, Hughey JJ, Fan-Minogue H, Van Auken K, Dumontier M, Musen MA. Is the crowd better as an assistant or a replacement in ontology engineering? An exploration through the lens of the Gene Ontology. Journal of Biomedical Informatics. PMID 26873781 DOI: 10.1016/j.jbi.2016.02.005  0.32
2015 Tu SW, Nyulas CI, Tudorache T, Musen MA. A Method to Compare ICF and SNOMED CT for Coverage of U.S. Social Security Administration's Disability Listing Criteria. Amia ... Annual Symposium Proceedings. Amia Symposium. 2015: 1224-33. PMID 26958262  0.32
2015 Lamprecht D, Strohmaier M, Helic D, Nyulas C, Tudorache T, Noy NF, Musen MA. Using ontologies to model human navigation behavior in information networks: A study based on Wikipedia. Semantic Web. 6: 403-422. PMID 26568745 DOI: 10.3233/SW-140143  0.4
2015 Musen MA, Bean CA, Cheung KH, Dumontier M, Durante KA, Gevaert O, Gonzalez-Beltran A, Khatri P, Kleinstein SH, O'Connor MJ, Pouliot Y, Rocca-Serra P, Sansone SA, Wiser JA. The center for expanded data annotation and retrieval. Journal of the American Medical Informatics Association : Jamia. PMID 26112029 DOI: 10.1093/jamia/ocv048  0.32
2015 Wang H, Tudorache T, Dou D, Noy NF, Musen MA. Analysis and Prediction of User Editing Patterns in Ontology Development Projects. Journal On Data Semantics. 4: 117-132. PMID 26052350 DOI: 10.1007/s13740-014-0047-3  0.32
2015 Friedman C, Rubin J, Brown J, Buntin M, Corn M, Etheredge L, Gunter C, Musen M, Platt R, Stead W, Sullivan K, Van Houweling D. Toward a science of learning systems: a research agenda for the high-functioning Learning Health System. Journal of the American Medical Informatics Association : Jamia. 22: 43-50. PMID 25342177 DOI: 10.1136/amiajnl-2014-002977  0.32
2015 Lamprecht D, Strohmaier M, Helic D, Nyulas C, Tudorache T, Noy NF, Musen MA. Using ontologies to model human navigation behavior in information networks: A study based on Wikipedia Semantic Web. 6: 403-422. DOI: 10.3233/SW-140143  0.32
2015 Guarino N, Musen M. Applied ontology: The next decade begins Applied Ontology. 10: 1-4. DOI: 10.3233/AO-150143  0.32
2015 Ochs C, Perl Y, Geller J, Musen M. Using aggregate taxonomies to summarize SNOMED CT evolution Proceedings - 2015 Ieee International Conference On Bioinformatics and Biomedicine, Bibm 2015. 1008-1015. DOI: 10.1109/BIBM.2015.7359822  0.32
2015 Orlando JP, Musen MA, Moreira DA. User extensible system to identify problems in OWL ontologies and SWRL rules Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 9202: 112-126. DOI: 10.1007/978-3-319-21542-6_8  0.32
2014 Walk S, Singer P, Strohmaier M, Tudorache T, Musen MA, Noy NF. Discovering Beaten Paths in Collaborative Ontology-Engineering Projects using Markov Chains Journal of Biomedical Informatics. 51: 254-271. PMID 24953242 DOI: 10.1016/j.jbi.2014.06.004  0.32
2013 Mortensen JM, Musen MA, Noy NF. Crowdsourcing the verification of relationships in biomedical ontologies Amia ... Annual Symposium Proceedings / Amia Symposium. Amia Symposium. 2013: 1020-1029. PMID 24551391  0.32
2013 Walk S, Pöschko J, Strohmaier M, Andrews K, Tudorache T, Noy NF, Nyulas C, Musen MA. PragmatiX: An Interactive Tool for Visualizing the Creation Process Behind Collaboratively Engineered Ontologies. International Journal On Semantic Web and Information Systems. 9: 45-78. PMID 24465189 DOI: 10.4018/jswis.2013010103  0.32
2013 Strohmaier M, Walk S, Pöschko J, Lamprecht D, Tudorache T, Nyulas C, Musen MA, Noy NF. How Ontologies are Made: Studying the Hidden Social Dynamics Behind Collaborative Ontology Engineering Projects. Web Semantics (Online). 20. PMID 24311994 DOI: 10.1016/j.websem.2013.04.001  0.4
2013 Cases M, Furlong LI, Albanell J, Altman RB, Bellazzi R, Boyer S, Brand A, Brookes AJ, Brunak S, Clark TW, Gea J, Ghazal P, Graf N, Guigó R, Klein TE, ... ... Musen M, et al. Improving data and knowledge management to better integrate health care and research. Journal of Internal Medicine. 274: 321-8. PMID 23808970 DOI: 10.1111/joim.12105  0.32
2013 Tudorache T, Nyulas C, Noy NF, Musen MA. WebProtégé: A Collaborative Ontology Editor and Knowledge Acquisition Tool for the Web. Semantic Web. 4: 89-99. PMID 23807872 DOI: 10.3233/SW-2012-0057  0.4
2013 Salvadores M, Alexander PR, Musen MA, Noy NF. BioPortal as a Dataset of Linked Biomedical Ontologies and Terminologies in RDF Semantic Web. 4: 277-284. DOI: 10.3233/SW-2012-0086  0.32
2013 Tudorache T, Nyulas C, Noy NF, Musen MA. WebProtégé: A collaborative ontology editor and knowledge acquisition tool for the web Semantic Web. 4: 89-99. DOI: 10.3233/SW-2012-0057  0.32
2013 Noy NF, Mortensen J, Alexander PR, Musen MA. Mechanical Turk as an ontology engineer? Using microtasks as a component of an ontology-engineering workflow Proceedings of the 3rd Annual Acm Web Science Conference, Websci 2013. 262-271. DOI: 10.1145/2464464.2464482  0.32
2013 Strohmaier M, Walk S, Pöschko J, Lamprecht D, Tudorache T, Nyulas C, Musen MA, Noy NF. How ontologies are made: Studying the hidden social dynamics behind collaborative ontology engineering projects Journal of Web Semantics. 20: 18-34. DOI: 10.1016/j.websem.2013.04.001  0.32
2013 Tudorache T, Nyulas CI, Noy NF, Musen MA. Using semantic web in ICD-11: Three years down the road Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 8219: 195-211. DOI: 10.1007/978-3-642-41338-4_13  0.32
2013 Noy NF, Alexander PR, Harpaz R, Whetzel PL, Fergerson RW, Musen MA. Getting lucky in ontology search: A data-driven evaluation framework for ontology ranking Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 8218: 444-459. DOI: 10.1007/978-3-642-41335-3_28  0.32
2013 Horridge M, Tudorache T, Vendetti J, Nyulas CI, Musen MA, Noy NF. Simplified OWL ontology editing for the web: Is WebProtégé enough? Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 8218: 200-215. DOI: 10.1007/978-3-642-41335-3_13  0.32
2013 Wang H, Tudorache T, Dou D, Noy NF, Musen MA. Analysis of user editing patterns in ontology development projects Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 8185: 470-487. DOI: 10.1007/978-3-642-41030-7_34  0.32
2012 Mortensen JM, Horridge M, Musen MA, Noy NF. Applications of ontology design patterns in biomedical ontologies Amia ... Annual Symposium Proceedings / Amia Symposium. Amia Symposium. 2012: 643-652. PMID 23304337  0.32
2012 Shah NH, Cole T, Musen MA. Chapter 9: Analyses using disease ontologies. Plos Computational Biology. 8: e1002827. PMID 23300417 DOI: 10.1371/journal.pcbi.1002827  0.32
2012 Kulikowski CA, Shortliffe EH, Currie LM, Elkin PL, Hunter LE, Johnson TR, Kalet IJ, Lenert LA, Musen MA, Ozbolt JG, Smith JW, Tarczy-Hornoch PZ, Williamson JJ. AMIA Board white paper: definition of biomedical informatics and specification of core competencies for graduate education in the discipline. Journal of the American Medical Informatics Association : Jamia. 19: 931-8. PMID 22683918 DOI: 10.1136/amiajnl-2012-001053  0.32
2012 Musen MA, Noy NF, Shah NH, Whetzel PL, Chute CG, Story MA, Smith B. The National Center for Biomedical Ontology. Journal of the American Medical Informatics Association : Jamia. 19: 190-5. PMID 22081220 DOI: 10.1136/amiajnl-2011-000523  0.32
2012 Tao C, Noy NF, Solbrig HR, Shah NH, Musen MA, Chute CG. Proposed SKOS extensions for bioportal terminology services Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 7185: 342-349. DOI: 10.1007/978-3-642-29923-0_23  0.32
2011 Jonquet C, Lependu P, Falconer S, Coulet A, Noy NF, Musen MA, Shah NH. NCBO Resource Index: Ontology-Based Search and Mining of Biomedical Resources. Web Semantics (Online). 9: 316-324. PMID 21918645 DOI: 10.1016/j.websem.2011.06.005  0.32
2011 Whetzel PL, Noy NF, Shah NH, Alexander PR, Nyulas C, Tudorache T, Musen MA. BioPortal: enhanced functionality via new Web services from the National Center for Biomedical Ontology to access and use ontologies in software applications. Nucleic Acids Research. 39: W541-5. PMID 21672956 DOI: 10.1093/nar/gkr469  0.32
2011 LePendu P, Musen MA, Shah NH. Enabling enrichment analysis with the Human Disease Ontology. Journal of Biomedical Informatics. 44: S31-8. PMID 21550421 DOI: 10.1016/j.jbi.2011.04.007  0.32
2011 Tenenbaum JD, Whetzel PL, Anderson K, Borromeo CD, Dinov ID, Gabriel D, Kirschner B, Mirel B, Morris T, Noy N, Nyulas C, Rubenson D, Saxman PR, Singh H, Whelan N, ... ... Musen MA, et al. The Biomedical Resource Ontology (BRO) to enable resource discovery in clinical and translational research. Journal of Biomedical Informatics. 44: 137-45. PMID 20955817 DOI: 10.1016/j.jbi.2010.10.003  0.32
2011 Ghazvinian A, Noy NF, Musen MA. How orthogonal are the OBO Foundry ontologies? Journal of Biomedical Semantics. 2. DOI: 10.1186/2041-1480-2-S2-S2  0.32
2011 Ghazvinian A, Noy NF, Musen MA. From mappings to modules: Using mappings to identify domain-specific modules in large ontologies Kcap 2011 - Proceedings of the 2011 Knowledge Capture Conference. 33-40. DOI: 10.1145/1999676.1999684  0.32
2011 Tudorache T, Noy NF, Falconer SM, Musen MA. A knowledge base driven user interface for collaborative ontology development International Conference On Intelligent User Interfaces, Proceedings Iui. 411-414. DOI: 10.1145/1943403.1943478  0.32
2011 Alexander PR, Nyulas C, Tudorache T, Whetzel PL, Noy NF, Musen MA. Semantic infrastructure to enable collaboration in ontology development Proceedings of the 2011 International Conference On Collaboration Technologies and Systems, Cts 2011. 423-430. DOI: 10.1109/CTS.2011.5928720  0.32
2010 Tudorache T, Falconer S, Nyulas C, Storey MA, Ustün TB, Musen MA. Supporting the Collaborative Authoring of ICD-11 with WebProtégé. Amia ... Annual Symposium Proceedings / Amia Symposium. Amia Symposium. 2010: 802-6. PMID 21347089  0.4
2010 Coulet A, Shah NH, Garten Y, Musen M, Altman RB. Using text to build semantic networks for pharmacogenomics. Journal of Biomedical Informatics. 43: 1009-19. PMID 20723615 DOI: 10.1016/j.jbi.2010.08.005  0.32
2010 Jonquet C, Musen MA, Shah NH. Building a biomedical ontology recommender web service. Journal of Biomedical Semantics. 1: S1. PMID 20626921 DOI: 10.1186/2041-1480-1-S1-S1  0.32
2010 Tudorache T, Falconer S, Nyulas C, Noy NF, Musen MA. Will semantic web technologies work for the development of ICD-11? Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 6497: 257-272. DOI: 10.1007/978-3-642-17749-1_17  0.32
2010 O'Connor MJ, Halaschek-Wiener C, Musen MA. Mapping master: A flexible approach for mapping spreadsheets to OWL Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 6497: 194-208. DOI: 10.1007/978-3-642-17749-1_13  0.32
2010 LePendu P, Noy NF, Jonquet C, Alexander PR, Shah NH, Musen MA. Optimize first, buy later: Analyzing metrics to ramp-up very large knowledge bases Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 6496: 486-501. DOI: 10.1007/978-3-642-17746-0_31  0.32
2010 Tudorache T, Falconer S, Noy NF, Nyulas C, Üstün TB, Storey MA, Musen MA. Ontology development for the masses: Creating ICD-11 in WebProtégé Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 6317: 74-89. DOI: 10.1007/978-3-642-16438-5_6  0.32
2009 O'Connor MJ, Nyulas C, Tu S, Buckeridge DL, Okhmatovskaia A, Musen MA. Software-engineering challenges of building and deploying reusable problem solvers. Artificial Intelligence For Engineering Design, Analysis and Manufacturing : Ai Edam. 23: 339-356. PMID 23565031 DOI: 10.1017/S0890060409990047  0.32
2009 Izadi M, Buckeridge D, Okhmatovskaia A, Tu SW, O'Connor MJ, Nyulas C, Musen MA. A Bayesian network model for analysis of detection performance in surveillance systems. Amia ... Annual Symposium Proceedings / Amia Symposium. Amia Symposium. 2009: 276-80. PMID 20351864  0.32
2009 Ghazvinian A, Noy NF, Musen MA. Creating mappings for ontologies in biomedicine: simple methods work Amia ... Annual Symposium Proceedings / Amia Symposium. Amia Symposium. 2009: 198-202. PMID 20351849  0.32
2009 Noy NF, Shah NH, Whetzel PL, Dai B, Dorf M, Griffith N, Jonquet C, Rubin DL, Storey MA, Chute CG, Musen MA. BioPortal: ontologies and integrated data resources at the click of a mouse. Nucleic Acids Research. 37: W170-3. PMID 19483092 DOI: 10.1093/nar/gkp440  0.32
2009 Rubin DL, Talos IF, Halle M, Musen MA, Kikinis R. Computational neuroanatomy: ontology-based representation of neural components and connectivity. Bmc Bioinformatics. 10: S3. PMID 19208191 DOI: 10.1186/1471-2105-10-S2-S3  0.32
2009 Ghazvinian A, Noy NF, Jonquet C, Shah N, Musen MA. What four million mappings can tell you about two hundred ontologies Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 5823: 229-242. DOI: 10.1007/978-3-642-04930-9_15  0.32
2009 Noy NF, Musen MA. Traversing ontologies to extract views Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 5445: 245-260. DOI: 10.1007/978-3-642-01907-4_11  0.32
2008 Buckeridge DL, Okhmatovskaia A, Tu S, O'Connor M, Nyulas C, Musen MA. Predicting outbreak detection in public health surveillance: quantitative analysis to enable evidence-based method selection. Amia ... Annual Symposium Proceedings. Amia Symposium. 76-80. PMID 18999264  0.4
2008 Noy NF, Tudorache T, de Coronado S, Musen MA. Developing biomedical ontologies collaboratively Amia ... Annual Symposium Proceedings / Amia Symposium. Amia Symposium. 520-524. PMID 18998901  0.32
2008 Buckeridge DL, Okhmatovskaia A, Tu S, O'Connor M, Nyulas C, Musen MA. Understanding detection performance in public health surveillance: modeling aberrancy-detection algorithms. Journal of the American Medical Informatics Association : Jamia. 15: 760-9. PMID 18755992 DOI: 10.1197/jamia.M2799  0.4
2008 Supekar K, Menon V, Rubin D, Musen M, Greicius MD. Network analysis of intrinsic functional brain connectivity in Alzheimer's disease. Plos Computational Biology. 4: e1000100. PMID 18584043 DOI: 10.1371/journal.pcbi.1000100  0.32
2008 Mons B, Ashburner M, Chichester C, van Mulligen E, Weeber M, den Dunnen J, van Ommen GJ, Musen M, Cockerill M, Hermjakob H, Mons A, Packer A, Pacheco R, Lewis S, Berkeley A, et al. Calling on a million minds for community annotation in WikiProteins. Genome Biology. 9: R89. PMID 18507872 DOI: 10.1186/gb-2008-9-5-r89  0.32
2008 Talos IF, Rubin DL, Halle M, Musen M, Kikinis R. A prototype symbolic model of canonical functional neuroanatomy of the motor system. Journal of Biomedical Informatics. 41: 251-63. PMID 18164666 DOI: 10.1016/j.jbi.2007.11.003  0.32
2007 Moreira DA, Shah NH, Musen MA. Interpretation errors related to the GO annotation file format. Amia ... Annual Symposium Proceedings / Amia Symposium. Amia Symposium. 538-42. PMID 18693894  0.32
2007 Rubin DL, Noy NF, Musen MA. Protégé: A tool for managing and using terminology in radiology applications Journal of Digital Imaging. 20: 34-46. PMID 17687607 DOI: 10.1007/s10278-007-9065-0  0.32
2007 Shah NH, Rubin DL, Espinosa I, Montgomery K, Musen MA. Annotation and query of tissue microarray data using the NCI Thesaurus. Bmc Bioinformatics. 8: 296. PMID 17686183 DOI: 10.1186/1471-2105-8-296  0.32
2007 Tu SW, Campbell JR, Glasgow J, Nyman MA, McClure R, McClay J, Parker C, Hrabak KM, Berg D, Weida T, Mansfield JG, Musen MA, Abarbanel RM. The SAGE Guideline Model: achievements and overview. Journal of the American Medical Informatics Association : Jamia. 14: 589-98. PMID 17600098 DOI: 10.1197/jamia.M2399  0.32
2007 Alani H, Noy NF, Shah N, Shadbolt N, Musen MA. Searching ontologies based on content: Experiments in the biomedical domain K-Cap'07: Proceedings of the Fourth International Conference On Knowledge Capture. 55-62. DOI: 10.1145/1298406.1298418  0.32
2006 Buckeridge DL, Owens DK, Switzer P, Frank J, Musen MA. Evaluating detection of an inhalational anthrax outbreak. Emerging Infectious Diseases. 12: 1942-9. PMID 17326949 DOI: 10.3201/eid1212.060331  0.32
2006 Tu SW, Hrabak KM, Campbell JR, Glasgow J, Nyman MA, McClure R, McClay J, Abarbanel R, Mansfield JG, Martins SM, Goldstein MK, Musen MA. Use of declarative statements in creating and maintaining computer-interpretable knowledge bases for guideline-based care. Amia ... Annual Symposium Proceedings / Amia Symposium. Amia Symposium. 784-8. PMID 17238448  0.32
2006 Shah NH, Rubin DL, Supekar KS, Musen MA. Ontology-based annotation and query of tissue microarray data. Amia ... Annual Symposium Proceedings / Amia Symposium. Amia Symposium. 709-13. PMID 17238433  0.32
2006 Rubin DL, Grossman D, Neal M, Cook DL, Bassingthwaighte JB, Musen MA. Ontology-based representation of simulation models of physiology. Amia ... Annual Symposium Proceedings / Amia Symposium. Amia Symposium. 664-8. PMID 17238424  0.32
2006 Rubin DL, Lewis SE, Mungall CJ, Misra S, Westerfield M, Ashburner M, Sim I, Chute CG, Solbrig H, Storey MA, Smith B, Day-Richter J, Noy NF, Musen MA. National Center for Biomedical Ontology: advancing biomedicine through structured organization of scientific knowledge. Omics : a Journal of Integrative Biology. 10: 185-98. PMID 16901225 DOI: 10.1089/omi.2006.10.185  0.32
2006 Rubin DL, Dameron O, Bashir Y, Grossman D, Dev P, Musen MA. Using ontologies linked with geometric models to reason about penetrating injuries Artificial Intelligence in Medicine. 37: 167-176. PMID 16730959 DOI: 10.1016/j.artmed.2006.03.006  0.32
2005 Rubin DL, Dameron O, Musen MA. Use of description logic classification to reason about consequences of penetrating injuries Amia ... Annual Symposium Proceedings / Amia Symposium. Amia Symposium. 649-653. PMID 16779120  0.32
2005 Dameron O, Rubin DL, Musen MA. Challenges in converting frame-based ontology into OWL: the Foundational Model of Anatomy case-study Amia ... Annual Symposium Proceedings / Amia Symposium. Amia Symposium. 181-185. PMID 16779026  0.32
2005 Hou CSJ, Musen MA, Noy NF. EZPAL: Environment for composing constraint axioms by instantiating templates International Journal of Human Computer Studies. 62: 578-596. DOI: 10.1016/j.ijhcs.2004.07.002  0.32
2004 Tu SW, Campbell J, Musen MA. The SAGE guideline modeling: motivation and methodology. Studies in Health Technology and Informatics. 101: 167-71. PMID 15537222  0.32
2004 Tu SW, Musen MA, Shankar R, Campbell J, Hrabak K, McClay J, Huff SM, McClure R, Parker C, Rocha R, Abarbanel R, Beard N, Glasgow J, Mansfield G, Ram P, et al. Modeling guidelines for integration into clinical workflow. Studies in Health Technology and Informatics. 107: 174-8. PMID 15360798 DOI: 10.3233/978-1-60750-949-3-174  0.32
2004 Goldstein MK, Coleman RW, Tu SW, Shankar RD, O'Connor MJ, Musen MA, Martins SB, Lavori PW, Shlipak MG, Oddone E, Advani AA, Gholami P, Hoffman BB. Translating research into practice: organizational issues in implementing automated decision support for hypertension in three medical centers. Journal of the American Medical Informatics Association : Jamia. 11: 368-76. PMID 15187064 DOI: 10.1197/jamia.M1534  0.32
2004 Noy NF, Rubin DL, Musen MA. Making biomedical ontologies and ontology repositories work Ieee Intelligent Systems. 19: 78-81. DOI: 10.1109/MIS.2004.67  0.32
2004 Noy NF, Musen MA. Ontology versioning in an ontology management framework Ieee Intelligent Systems. 19: 6-13. DOI: 10.1109/MIS.2004.33  0.32
2004 Noy NF, Musen MA, Mejino JLV, Rosse C. Pushing the envelope: Challenges in a frame-based representation of human anatomy Data and Knowledge Engineering. 48: 335-359. DOI: 10.1016/j.datak.2003.06.002  0.32
2003 O'Connor MJ, Buckeridge DL, Choy M, Crubezy M, Pincus Z, Musen MA. BioSTORM: a system for automated surveillance of diverse data sources. Amia ... Annual Symposium Proceedings / Amia Symposium. Amia Symposium. 1071. PMID 14728574  0.4
2003 Shankar RD, Tu SW, Musen MA. A knowledge-acquisition wizard to encode guidelines. Amia ... Annual Symposium Proceedings. Amia Symposium. 1007. PMID 14728510  0.32
2003 Noy NF, Crubezy M, Fergerson RW, Knublauch H, Tu SW, Vendetti J, Musen MA. Protégé-2000: an open-source ontology-development and knowledge-acquisition environment Amia ... Annual Symposium Proceedings / Amia Symposium. Amia Symposium. 953. PMID 14728458  0.32
2003 Tu SW, Campbell J, Musen MA. The structure of guideline recommendations: a synthesis. Amia ... Annual Symposium Proceedings. Amia Symposium. 679-83. PMID 14728259  0.32
2003 Buckeridge DL, Musen MA, Switzer P, Crubézy M. An analytic framework fo space-time aberrancy detection in public health surveillance data. Amia ... Annual Symposium Proceedings / Amia Symposium. Amia Symposium. 120-4. PMID 14728146  0.32
2003 Gennari JH, Musen MA, Fergerson RW, Grosso WE, Crubezy M, Eriksson H, Noy NF, Tu SW. The evolution of Protégé: An environment for knowledge-based systems development International Journal of Human Computer Studies. 58: 89-123. DOI: 10.1016/S1071-5819(02)00127-1  0.32
2003 Noy NF, Musen MA. The PROMPT suite: Interactive tools for ontology merging and mapping International Journal of Human Computer Studies. 59: 983-1024. DOI: 10.1016/j.ijhcs.2003.08.002  0.32
2002 O'Connor MJ, Tu SW, Musen MA. The Chronus II temporal database mediator. Proceedings. Amia Symposium. 567-71. PMID 12474882  0.32
2002 Das AK, Musen MA. SYNCHRONUS: a reusable software module for temporal integration. Proceedings. Amia Symposium. 195-9. PMID 12463814  0.96
2002 Buckeridge DL, Graham J, O'Connor MJ, Choy MK, Tu SW, Musen MA. Knowledge-based bioterrorism surveillance. Proceedings / Amia ... Annual Symposium. Amia Symposium. 76-80. PMID 12463790  0.32
2002 Meric F, Singletary SE, Bernstam EV, Mirza NQ, Hunt KK, Ames FC, Ross MI, Kuerer HM, Pollock RE, Musen MA. Breast cancer on the world wide web: Cross sectional survey of quality of information and popularity of websites British Medical Journal. 324: 577-581. PMID 11884322  0.32
2002 Gil Y, Musen M, Shavlik J. Report on the first international conference on knowledge capture (K-CAP) Ai Magazine. 23: 107-108.  0.32
2001 Noy NF, Sintek M, Decker S, Crubézy M, Fergerson RW, Musen MA. Creating semantic web contents with protégé-2000 Ieee Intelligent Systems and Their Applications. 16: 60-71. DOI: 10.1109/5254.920601  0.32
1999 Oliver DE, Shahar Y, Shortliffe EH, Musen MA. Representation of change in controlled medical terminologies Artificial Intelligence in Medicine. 15: 53-76. PMID 9930616 DOI: 10.1016/S0933-3657(98)00045-1  0.32
1999 Musen MA, Fagan LM, Combs DM, Shortliffe EH. Use of a domain model to drive an interactive knowledge-editing tool International Journal of Human Computer Studies. 51: 479-495. DOI: 10.1006/ijhc.1987.0320  0.32
1998 Gennari JH, Cheng H, Altman RB, Musen MA. Reuse, CORBA, and knowledge-based systems International Journal of Human Computer Studies. 49: 523-546.  0.32
1996 Rothenfluh TE, Gennari JH, Eriksson H, Puerta AR, Tu SW, Musen MA. Reusable ontologies, knowledge-acquisition tools, and performance systems: PROTÉGÉ-II solutions to Sisyphus-2 International Journal of Human Computer Studies. 44: 303-332.  0.32
1995 Musen MA, Wieckert KE, Miller ET, Campbell KE, Fagan LM. Development of a controlled medical terminology, Knowledge acquisition and knowledge representation Methods of Information in Medicine. 34: 85-95. PMID 9082143  0.32
1995 Tu SW, Eriksson H, Gennari JH, Shahar Y, Musen MA. Ontology-based configuration of problem-solving methods and generation of knowledge-acquisition tools: application of PROTEGE-II to protocol-based decision support. Artificial Intelligence in Medicine. 7: 257-89. PMID 7581625 DOI: 10.1016/0933-3657(95)00006-R  0.32
1995 Gennari JH, Altman RB, Musen MA. Reuse with protege-II: from elevators to ribosomes Acm Sigsoft Symposium On Software Reusability - Ssr. 72-80.  0.32
1994 Gennari JH, Tu SW, Rothenfluh TE, Musen MA. Mapping domains to methods in support of reuse International Journal of Human - Computer Studies. 41: 399-424. DOI: 10.1006/ijhc.1994.1066  0.32
1989 Tu SW, Kahn MG, Musen MA, Fagan LM, Ferguson JC. Episodic Skeletal-Plan Refinement Based on Temporal Data Communications of the Acm. 32: 1439-1455. DOI: 10.1145/76380.76384  0.32
1987 Walton JD, Musen MA, Combs DM, Lane CD, Shortliffe EH, Fagan LM. Graphical access to medical expert systems: III. Design of a knowledge acquisition environment. Methods of Information in Medicine. 26: 78-88. PMID 3670103  0.32
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