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Mark A. Musen - Publications

Affiliations: 
Stanford University, Palo Alto, CA 
Area:
Health Sciences
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Year Citation  Score
2020 Polleres A, Kamdar MR, Fernández JD, Tudorache T, Musen MA. A more decentralized vision for Linked Data Semantic Web. 11: 101-113. DOI: 10.3233/Sw-190380  0.342
2019 Kamdar MR, Fernández JD, Polleres A, Tudorache T, Musen MA. Enabling Web-scale data integration in biomedicine through Linked Open Data. Npj Digital Medicine. 2: 90. PMID 31531395 DOI: 10.1038/s41746-019-0162-5  0.335
2019 Martínez-Romero M, O'Connor MJ, Egyedi AL, Willrett D, Hardi J, Graybeal J, Musen MA. Using association rule mining and ontologies to generate metadata recommendations from multiple biomedical databases. Database : the Journal of Biological Databases and Curation. 2019. PMID 31210270 DOI: 10.1093/Database/Baz059  0.413
2019 Gonçalves RS, Musen MA. The variable quality of metadata about biological samples used in biomedical experiments. Scientific Data. 6: 190021. PMID 30778255 DOI: 10.1038/Sdata.2019.21  0.301
2018 Bukhari SAC, O'Connor MJ, Martínez-Romero M, Egyedi AL, Willrett D, Graybeal J, Musen MA, Rubelt F, Cheung KH, Kleinstein SH. The CAIRR Pipeline for Submitting Standards-Compliant B and T Cell Receptor Repertoire Sequencing Studies to the National Center for Biotechnology Information Repositories. Frontiers in Immunology. 9: 1877. PMID 30166985 DOI: 10.3389/Fimmu.2018.01877  0.369
2018 Bukhari SAC, Martínez-Romero M, O' Connor MJ, Egyedi AL, Willrett D, Graybeal J, Musen MA, Cheung KH, Kleinstein SH. CEDAR OnDemand: a browser extension to generate ontology-based scientific metadata. Bmc Bioinformatics. 19: 268. PMID 30012108 DOI: 10.1186/S12859-018-2247-6  0.382
2018 Kamdar MR, Walk S, Tudorache T, Musen MA. Analyzing user interactions with biomedical ontologies: A visual perspective. Web Semantics (Online). 49: 16-30. PMID 29657560 DOI: 10.1016/J.Websem.2017.12.002  0.368
2018 Jonquet C, Toulet A, Arnaud E, Aubin S, Dzalé Yeumo E, Emonet V, Graybeal J, Laporte M, Musen MA, Pesce V, Larmande P. AgroPortal: A vocabulary and ontology repository for agronomy Computers and Electronics in Agriculture. 144: 126-143. DOI: 10.1016/J.Compag.2017.10.012  0.396
2017 Hadley D, Pan J, El-Sayed O, Aljabban J, Aljabban I, Azad TD, Hadied MO, Raza S, Rayikanti BA, Chen B, Paik H, Aran D, Spatz J, Himmelstein D, Panahiazar M, ... ... Musen MA, et al. Precision annotation of digital samples in NCBI's gene expression omnibus. Scientific Data. 4: 170125. PMID 28925997 DOI: 10.1038/Sdata.2017.125  0.329
2017 Kamdar MR, Tudorache T, Musen MA. A Systematic Analysis of Term Reuse and Term Overlap across Biomedical Ontologies. Semantic Web. 8: 853-871. PMID 28819351 DOI: 10.3233/Sw-160238  0.356
2017 Gonçalves RS, Tu SW, Nyulas CI, Tierney MJ, Musen MA. An ontology-driven tool for structured data acquisition using Web forms. Journal of Biomedical Semantics. 8: 26. PMID 28764813 DOI: 10.1186/S13326-017-0133-1  0.382
2017 Martínez-Romero M, Jonquet C, O'Connor MJ, Graybeal J, Pazos A, Musen MA. NCBO Ontology Recommender 2.0: an enhanced approach for biomedical ontology recommendation. Journal of Biomedical Semantics. 8: 21. PMID 28592275 DOI: 10.1186/S13326-017-0128-Y  0.401
2017 Ochs C, Perl Y, Geller J, Arabandi S, Tudorache T, Musen MA. An Empirical Analysis of Ontology Reuse in BioPortal. Journal of Biomedical Informatics. PMID 28583809 DOI: 10.1016/J.Jbi.2017.05.021  0.354
2016 Ochs C, Geller J, Perl Y, Musen MA. A Unified Software Framework for Deriving, Visualizing, and Exploring Abstraction Networks for Ontologies. Journal of Biomedical Informatics. PMID 27345947 DOI: 10.1016/J.Jbi.2016.06.008  0.348
2016 Ochs C, He Z, Zheng L, Geller J, Perl Y, Hripcsak G, Musen MA. Utilizing a structural meta-ontology for family-based quality assurance of the BioPortal ontologies. Journal of Biomedical Informatics. PMID 26988001 DOI: 10.1016/J.Jbi.2016.03.007  0.302
2016 Mortensen JM, Telis N, Hughey JJ, Fan-Minogue H, Van Auken K, Dumontier M, Musen MA. Is the crowd better as an assistant or a replacement in ontology engineering? An exploration through the lens of the Gene Ontology. Journal of Biomedical Informatics. PMID 26873781 DOI: 10.1016/J.Jbi.2016.02.005  0.36
2016 Buckeridge D, Lavigne M, Zinszer K, Okhmatovskaia A, Tu S, Nyalus C, Musen M, Lau W, Carroll L, Abernethy N. Developing the Scalable Data Integration for Disease Surveillance (SDIDS) Platform Online Journal of Public Health Informatics. 8. DOI: 10.5210/Ojphi.V8I1.6414  0.55
2015 Lamprecht D, Strohmaier M, Helic D, Nyulas C, Tudorache T, Noy NF, Musen MA. Using ontologies to model human navigation behavior in information networks: A study based on Wikipedia. Semantic Web. 6: 403-422. PMID 26568745 DOI: 10.3233/Sw-140143  0.369
2015 Musen MA, Bean CA, Cheung KH, Dumontier M, Durante KA, Gevaert O, Gonzalez-Beltran A, Khatri P, Kleinstein SH, O'Connor MJ, Pouliot Y, Rocca-Serra P, Sansone SA, Wiser JA. The center for expanded data annotation and retrieval. Journal of the American Medical Informatics Association : Jamia. PMID 26112029 DOI: 10.1093/Jamia/Ocv048  0.395
2015 Wang H, Tudorache T, Dou D, Noy NF, Musen MA. Analysis and Prediction of User Editing Patterns in Ontology Development Projects. Journal On Data Semantics. 4: 117-132. PMID 26052350 DOI: 10.1007/S13740-014-0047-3  0.339
2015 Friedman C, Rubin J, Brown J, Buntin M, Corn M, Etheredge L, Gunter C, Musen M, Platt R, Stead W, Sullivan K, Van Houweling D. Toward a science of learning systems: a research agenda for the high-functioning Learning Health System. Journal of the American Medical Informatics Association : Jamia. 22: 43-50. PMID 25342177 DOI: 10.1136/Amiajnl-2014-002977  0.3
2015 Guarino N, Musen M. Applied ontology: The next decade begins Applied Ontology. 10: 1-4. DOI: 10.3233/Ao-150143  0.345
2015 Walk S, Singer P, Strohmaier M, Helic D, Noy NF, Musen MA. How to apply Markov chains for modeling sequential edit patterns in collaborative ontology-engineering projects International Journal of Human Computer Studies. 84: 51-66. DOI: 10.1016/J.Ijhcs.2015.07.006  0.369
2014 Walk S, Singer P, Strohmaier M, Tudorache T, Musen MA, Noy NF. Discovering Beaten Paths in Collaborative Ontology-Engineering Projects using Markov Chains Journal of Biomedical Informatics. 51: 254-271. PMID 24953242 DOI: 10.1016/J.Jbi.2014.06.004  0.361
2014 Horridge M, Tudorache T, Nuylas C, Vendetti J, Noy NF, Musen MA. WebProtégé: A collaborative Web-based platform for editing biomedical ontologies Bioinformatics. 30: 2384-2385. PMID 24771560 DOI: 10.1093/Bioinformatics/Btu256  0.35
2014 Aquino Shluzas LM, Cronkite RC, Chambers D, Hoffman BB, Breeling J, Musen MA, Owens DK, Goldstein MK. Organizational factors affecting implementation of the ATHENA-Hypertension clinical decision support system during the VA’s nation-wide information technology restructuring: a case study Health Systems. 3: 214-234. DOI: 10.1057/Hs.2014.5  0.34
2013 Salvadores M, Alexander PR, Musen MA, Noy NF. BioPortal as a Dataset of Linked Biomedical Ontologies and Terminologies in RDF. Semantic Web. 4: 277-284. PMID 25214827 DOI: 10.3233/Sw-2012-0086  0.391
2013 Walk S, Pöschko J, Strohmaier M, Andrews K, Tudorache T, Noy NF, Nyulas C, Musen MA. PragmatiX: An Interactive Tool for Visualizing the Creation Process Behind Collaboratively Engineered Ontologies. International Journal On Semantic Web and Information Systems. 9: 45-78. PMID 24465189 DOI: 10.4018/Jswis.2013010103  0.373
2013 Strohmaier M, Walk S, Pöschko J, Lamprecht D, Tudorache T, Nyulas C, Musen MA, Noy NF. How Ontologies are Made: Studying the Hidden Social Dynamics Behind Collaborative Ontology Engineering Projects. Web Semantics (Online). 20. PMID 24311994 DOI: 10.1016/J.Websem.2013.04.001  0.353
2013 López-García P, Lependu P, Musen M, Illarramendi A. Cross-domain targeted ontology subsets for annotation: the case of SNOMED CORE and RxNorm. Journal of Biomedical Informatics. 47: 105-11. PMID 24095962 DOI: 10.1016/J.Jbi.2013.09.011  0.336
2013 Cases M, Furlong LI, Albanell J, Altman RB, Bellazzi R, Boyer S, Brand A, Brookes AJ, Brunak S, Clark TW, Gea J, Ghazal P, Graf N, Guigó R, Klein TE, ... ... Musen M, et al. Improving data and knowledge management to better integrate health care and research. Journal of Internal Medicine. 274: 321-8. PMID 23808970 DOI: 10.1111/Joim.12105  0.335
2013 Tudorache T, Nyulas C, Noy NF, Musen MA. WebProtégé: A Collaborative Ontology Editor and Knowledge Acquisition Tool for the Web. Semantic Web. 4: 89-99. PMID 23807872 DOI: 10.3233/Sw-2012-0057  0.421
2013 Gombocz EA, Splendiani A, Musen MA, Stanley RA, Eshleman JA. Yes, we can! Lessons from using Linked Open Data (LOD) and public ontologies to contextualize and enrich experimental data F1000research. 4. DOI: 10.7490/F1000Research.1093006.1  0.304
2013 Tudorache T, Nyulas C, Noy NF, Musen MA. WebProtégé: A collaborative ontology editor and knowledge acquisition tool for the web Semantic Web. 4: 89-99. DOI: 10.3233/SW-2012-0057  0.311
2013 Musen MA. The knowledge acquisition workshops: A remarkable convergence of ideas International Journal of Human-Computer Studies. 71: 195-199. DOI: 10.1016/J.Ijhcs.2012.10.011  0.41
2012 Shah NH, Cole T, Musen MA. Chapter 9: Analyses using disease ontologies. Plos Computational Biology. 8: e1002827. PMID 23300417 DOI: 10.1371/Journal.Pcbi.1002827  0.324
2012 Kulikowski CA, Shortliffe EH, Currie LM, Elkin PL, Hunter LE, Johnson TR, Kalet IJ, Lenert LA, Musen MA, Ozbolt JG, Smith JW, Tarczy-Hornoch PZ, Williamson JJ. AMIA Board white paper: definition of biomedical informatics and specification of core competencies for graduate education in the discipline. Journal of the American Medical Informatics Association : Jamia. 19: 931-8. PMID 22683918 DOI: 10.1136/Amiajnl-2012-001053  0.338
2012 Musen MA, Noy NF, Shah NH, Whetzel PL, Chute CG, Story MA, Smith B. The National Center for Biomedical Ontology. Journal of the American Medical Informatics Association : Jamia. 19: 190-5. PMID 22081220 DOI: 10.1136/Amiajnl-2011-000523  0.421
2011 Harland L, Larminie C, Sansone SA, Popa S, Marshall MS, Braxenthaler M, Cantor M, Filsell W, Forster MJ, Huang E, Matern A, Musen M, Saric J, Slater T, Wilson J, et al. Empowering industrial research with shared biomedical vocabularies. Drug Discovery Today. 16: 940-7. PMID 21963522 DOI: 10.1016/J.Drudis.2011.09.013  0.356
2011 Jonquet C, Lependu P, Falconer S, Coulet A, Noy NF, Musen MA, Shah NH. NCBO Resource Index: Ontology-Based Search and Mining of Biomedical Resources. Web Semantics (Online). 9: 316-324. PMID 21918645 DOI: 10.1016/J.Websem.2011.06.005  0.408
2011 Kalra D, Musen M, Smith B, Ceusters W, De Moor G. ARGOS policy brief on semantic interoperability. Studies in Health Technology and Informatics. 170: 1-15. PMID 21893897 DOI: 10.3233/978-1-60750-810-6-1  0.308
2011 Whetzel PL, Noy NF, Shah NH, Alexander PR, Nyulas C, Tudorache T, Musen MA. BioPortal: enhanced functionality via new Web services from the National Center for Biomedical Ontology to access and use ontologies in software applications. Nucleic Acids Research. 39: W541-5. PMID 21672956 DOI: 10.1093/Nar/Gkr469  0.362
2011 Ghazvinian A, Noy NF, Musen MA. How orthogonal are the OBO Foundry ontologies? Journal of Biomedical Semantics. 2: S2. PMID 21624157 DOI: 10.1186/2041-1480-2-S2-S2  0.447
2011 Coulet A, Garten Y, Dumontier M, Altman RB, Musen MA, Shah NH. Integration and publication of heterogeneous text-mined relationships on the Semantic Web. Journal of Biomedical Semantics. 2: S10. PMID 21624156 DOI: 10.1186/2041-1480-2-S2-S10  0.35
2011 LePendu P, Musen MA, Shah NH. Enabling enrichment analysis with the Human Disease Ontology. Journal of Biomedical Informatics. 44: S31-8. PMID 21550421 DOI: 10.1016/J.Jbi.2011.04.007  0.335
2011 Tenenbaum JD, Whetzel PL, Anderson K, Borromeo CD, Dinov ID, Gabriel D, Kirschner B, Mirel B, Morris T, Noy N, Nyulas C, Rubenson D, Saxman PR, Singh H, Whelan N, ... ... Musen MA, et al. The Biomedical Resource Ontology (BRO) to enable resource discovery in clinical and translational research. Journal of Biomedical Informatics. 44: 137-45. PMID 20955817 DOI: 10.1016/J.Jbi.2010.10.003  0.349
2010 Coulet A, Shah NH, Garten Y, Musen M, Altman RB. Using text to build semantic networks for pharmacogenomics. Journal of Biomedical Informatics. 43: 1009-19. PMID 20723615 DOI: 10.1016/J.Jbi.2010.08.005  0.372
2010 Jonquet C, Musen MA, Shah NH. Building a biomedical ontology recommender web service. Journal of Biomedical Semantics. 1: S1. PMID 20626921 DOI: 10.1186/2041-1480-1-S1-S1  0.399
2009 O'Connor MJ, Nyulas C, Tu S, Buckeridge DL, Okhmatovskaia A, Musen MA. Software-engineering challenges of building and deploying reusable problem solvers. Artificial Intelligence For Engineering Design, Analysis and Manufacturing : Ai Edam. 23: 339-356. PMID 23565031 DOI: 10.1017/S0890060409990047  0.62
2009 Jonquet C, Shah NH, Musen MA. The open biomedical annotator. Summit On Translational Bioinformatics. 2009: 56-60. PMID 21347171  0.317
2009 Izadi M, Buckeridge D, Okhmatovskaia A, Tu SW, O'Connor MJ, Nyulas C, Musen MA. A Bayesian network model for analysis of detection performance in surveillance systems. Amia ... Annual Symposium Proceedings / Amia Symposium. Amia Symposium. 2009: 276-80. PMID 20351864  0.463
2009 Shah NH, Bhatia N, Jonquet C, Rubin D, Chiang AP, Musen MA. Comparison of concept recognizers for building the Open Biomedical Annotator. Bmc Bioinformatics. 10: S14. PMID 19761568 DOI: 10.1186/1471-2105-10-S9-S14  0.379
2009 Noy NF, Shah NH, Whetzel PL, Dai B, Dorf M, Griffith N, Jonquet C, Rubin DL, Storey MA, Chute CG, Musen MA. BioPortal: ontologies and integrated data resources at the click of a mouse. Nucleic Acids Research. 37: W170-3. PMID 19483092 DOI: 10.1093/nar/gkp440  0.44
2009 Rubin DL, Talos IF, Halle M, Musen MA, Kikinis R. Computational neuroanatomy: ontology-based representation of neural components and connectivity. Bmc Bioinformatics. 10: S3. PMID 19208191 DOI: 10.1186/1471-2105-10-S2-S3  0.422
2009 Shah NH, Jonquet C, Chiang AP, Butte AJ, Chen R, Musen MA. Ontology-driven indexing of public datasets for translational bioinformatics. Bmc Bioinformatics. 10: S1. PMID 19208184 DOI: 10.1186/1471-2105-10-S2-S1  0.389
2009 Moreira DA, Mungall CJ, Shah NH, Aitken S, Richter J, Redmond T, Musen MA. The NCBO OBOF to OWL Mapping Nature Precedings. DOI: 10.1038/Npre.2009.3938.1  0.352
2009 Denney C, Batchelor C, Bodenreider O, Cheng S, Hart J, Hill J, Madden J, Musen M, Pichler E, Samwald M, Szalma S, Schriml L, Sedlock D, Soldatova L, Sonoda K, et al. Creating a Translational Medicine Ontology Nature Precedings. DOI: 10.1038/Npre.2009.3686.1  0.39
2008 Noy NF, de Coronado S, Solbrig H, Fragoso G, Hartel FW, Musen MA. Representing the NCI Thesaurus in OWL DL: Modeling tools help modeling languages. Applied Ontology. 3: 173-190. PMID 19789731 DOI: 10.3233/Ao-2008-0051  0.406
2008 Buckeridge DL, Okhmatovskaia A, Tu S, O'Connor M, Nyulas C, Musen MA. Predicting outbreak detection in public health surveillance: quantitative analysis to enable evidence-based method selection. Amia ... Annual Symposium Proceedings. Amia Symposium. 76-80. PMID 18999264  0.444
2008 Buckeridge DL, Okhmatovskaia A, Tu S, O'Connor M, Nyulas C, Musen MA. Understanding detection performance in public health surveillance: modeling aberrancy-detection algorithms. Journal of the American Medical Informatics Association : Jamia. 15: 760-9. PMID 18755992 DOI: 10.1197/Jamia.M2799  0.514
2008 Dinov ID, Rubin D, Lorensen W, Dugan J, Ma J, Murphy S, Kirschner B, Bug W, Sherman M, Floratos A, Kennedy D, Jagadish HV, Schmidt J, Athey B, Califano A, ... Musen M, et al. iTools: a framework for classification, categorization and integration of computational biology resources. Plos One. 3: e2265. PMID 18509477 DOI: 10.1371/Journal.Pone.0002265  0.372
2008 Mons B, Ashburner M, Chichester C, van Mulligen E, Weeber M, den Dunnen J, van Ommen GJ, Musen M, Cockerill M, Hermjakob H, Mons A, Packer A, Pacheco R, Lewis S, Berkeley A, et al. Calling on a million minds for community annotation in WikiProteins. Genome Biology. 9: R89. PMID 18507872 DOI: 10.1186/Gb-2008-9-5-R89  0.362
2008 Talos IF, Rubin DL, Halle M, Musen M, Kikinis R. A prototype symbolic model of canonical functional neuroanatomy of the motor system. Journal of Biomedical Informatics. 41: 251-63. PMID 18164666 DOI: 10.1016/J.Jbi.2007.11.003  0.4
2008 Balduccini M, Baral C, Brodaric B, Colton S, Fox P, Gutelius D, Hinkelman K, Horswill I, Huberman B, Hudlicka E, Lerman K, Lisetti C, McGuinness D, Maher ML, Musen MA, et al. Reports of the AAAI 2008 Spring Symposia Ai Magazine. 29: 107-115. DOI: 10.1609/Aimag.V29I3.2148  0.398
2007 Supekar K, Rubin D, Noy N, Musen M. Knowledge Zone: a public repository of peer-reviewed biomedical ontologies Medinfo. Medinfo. 12: 812-816. PMID 17911829  0.302
2007 Rubin DL, Noy NF, Musen MA. Protégé: A tool for managing and using terminology in radiology applications Journal of Digital Imaging. 20: 34-46. PMID 17687607 DOI: 10.1007/S10278-007-9065-0  0.39
2007 Shah NH, Rubin DL, Espinosa I, Montgomery K, Musen MA. Annotation and query of tissue microarray data using the NCI Thesaurus. Bmc Bioinformatics. 8: 296. PMID 17686183 DOI: 10.1186/1471-2105-8-296  0.328
2007 Tu SW, Campbell JR, Glasgow J, Nyman MA, McClure R, McClay J, Parker C, Hrabak KM, Berg D, Weida T, Mansfield JG, Musen MA, Abarbanel RM. The SAGE Guideline Model: achievements and overview. Journal of the American Medical Informatics Association : Jamia. 14: 589-98. PMID 17600098 DOI: 10.1197/Jamia.M2399  0.383
2007 Moreira DA, Musen MA. OBO to OWL: a protege OWL tab to read/save OBO ontologies. Bioinformatics (Oxford, England). 23: 1868-70. PMID 17496317 DOI: 10.1093/Bioinformatics/Btm258  0.398
2007 Dameron O, Musen MA, Gibaud B. Using semantic dependencies for consistency management of an ontology of brain-cortex anatomy. Artificial Intelligence in Medicine. 39: 217-25. PMID 17254759 DOI: 10.1016/J.Artmed.2006.09.004  0.325
2006 Buckeridge DL, Owens DK, Switzer P, Frank J, Musen MA. Evaluating detection of an inhalational anthrax outbreak. Emerging Infectious Diseases. 12: 1942-9. PMID 17326949 DOI: 10.3201/Eid1212.060331  0.484
2006 Rubin DL, Lewis SE, Mungall CJ, Misra S, Westerfield M, Ashburner M, Sim I, Chute CG, Solbrig H, Storey MA, Smith B, Day-Richter J, Noy NF, Musen MA. National Center for Biomedical Ontology: advancing biomedicine through structured organization of scientific knowledge. Omics : a Journal of Integrative Biology. 10: 185-98. PMID 16901225 DOI: 10.1089/Omi.2006.10.185  0.444
2005 Crubezy M, O'Connor M, Buckeridge D, Pincus Z, Musen M. Ontology-Centered Syndromic Surveillance for Bioterrorism Ieee Intelligent Systems. 20: 26-35. DOI: 10.1109/Mis.2005.91  0.554
2005 Hou CSJ, Musen MA, Noy NF. EZPAL: Environment for composing constraint axioms by instantiating templates International Journal of Human Computer Studies. 62: 578-596. DOI: 10.1016/J.Ijhcs.2004.07.002  0.371
2004 Tu SW, Campbell J, Musen MA. The SAGE guideline modeling: motivation and methodology. Studies in Health Technology and Informatics. 101: 167-71. PMID 15537222 DOI: 10.3233/978-1-60750-944-8-167  0.336
2004 Tu SW, Musen MA, Shankar R, Campbell J, Hrabak K, McClay J, Huff SM, McClure R, Parker C, Rocha R, Abarbanel R, Beard N, Glasgow J, Mansfield G, Ram P, et al. Modeling guidelines for integration into clinical workflow. Studies in Health Technology and Informatics. 107: 174-8. PMID 15360798 DOI: 10.3233/978-1-60750-949-3-174  0.361
2004 Goldstein MK, Coleman RW, Tu SW, Shankar RD, O'Connor MJ, Musen MA, Martins SB, Lavori PW, Shlipak MG, Oddone E, Advani AA, Gholami P, Hoffman BB. Translating research into practice: organizational issues in implementing automated decision support for hypertension in three medical centers. Journal of the American Medical Informatics Association : Jamia. 11: 368-76. PMID 15187064 DOI: 10.1197/Jamia.M1534  0.366
2004 Noy NF, Rubin DL, Musen MA. Making biomedical ontologies and ontology repositories work Ieee Intelligent Systems. 19: 78-81. DOI: 10.1109/Mis.2004.67  0.408
2004 Noy NF, Musen MA. Ontology versioning in an ontology management framework Ieee Intelligent Systems. 19: 6-13. DOI: 10.1109/Mis.2004.33  0.382
2003 O'Connor MJ, Buckeridge DL, Choy M, Crubezy M, Pincus Z, Musen MA. BioSTORM: a system for automated surveillance of diverse data sources. Amia ... Annual Symposium Proceedings / Amia Symposium. Amia Symposium. 1071. PMID 14728574  0.519
2003 Pincus Z, Musen MA. Contextualizing heterogeneous data for integration and inference. Amia ... Annual Symposium Proceedings. Amia Symposium. 514-8. PMID 14728226  0.303
2003 Buckeridge DL, Musen MA, Switzer P, Crubézy M. An analytic framework fo space-time aberrancy detection in public health surveillance data. Amia ... Annual Symposium Proceedings / Amia Symposium. Amia Symposium. 120-4. PMID 14728146  0.5
2003 Crubezy M, Musen MA, Motta E, Lu W. Configuring online problem-solving resources with the Internet Reasoning Service Ieee Intelligent Systems. 18: 34-42. DOI: 10.1109/Mis.2003.1193655  0.319
2003 Musen M, Neumann B, Studer R. IFIP conference on intelligent information processing Ieee Intelligent Systems. 18: 16-17. DOI: 10.1109/Mis.2003.1193652  0.35
2003 Gennari JH, Musen MA, Fergerson RW, Grosso WE, Crubezy M, Eriksson H, Noy NF, Tu SW. The evolution of Protégé: An environment for knowledge-based systems development International Journal of Human Computer Studies. 58: 89-123. DOI: 10.1016/S1071-5819(02)00127-1  0.446
2003 Noy NF, Musen MA. The PROMPT suite: Interactive tools for ontology merging and mapping International Journal of Human Computer Studies. 59: 983-1024. DOI: 10.1016/J.Ijhcs.2003.08.002  0.424
2003 Buckeridge DL, O’Connor M, Graham J, Choy MK, Pincus Z, Musen M. A knowledge-based method for surveillance Journal of Urban Health. 80: i129-i130. DOI: 10.1007/Bf02416920  0.552
2003 Graham JV, Buckeridge DL, Pincus Z, Choy MK, O’Connor MJ, Musen MA. A knowledge-based approach to defining syndromes Journal of Urban Health. 80: i129-i129. DOI: 10.1007/Bf02416919  0.601
2003 Pincus Z, Buckeridge DL, Choy MK, Graham JV, O’Connor MJ, Musen M. Tools to facilitate the interchange and analysis of nontraditional health surveillance data Journal of Urban Health. 80: i128-i129. DOI: 10.1007/Bf02416918  0.532
2003 Fensel D, Motta E, Harmelen Fv, Benjamins VR, Crubezy M, Decker S, Gaspari M, Groenboom R, Grosso W, Musen M, Plaza E, Schreiber G, Studer R, Wielinga B. The unified problem-solving method development language UPML Knowledge and Information Systems. 5: 83-131. DOI: 10.10007/S10115-002-0074-5  0.371
2002 Buckeridge DL, Graham J, O'Connor MJ, Choy MK, Tu SW, Musen MA. Knowledge-based bioterrorism surveillance. Proceedings / Amia ... Annual Symposium. Amia Symposium. 76-80. PMID 12463790  0.548
2002 Gil Y, Musen M, Shavlik J. Report on the first international conference on knowledge capture (K-CAP) Ai Magazine. 23: 107-108. DOI: 10.1609/Aimag.V23I4.1676  0.398
2002 Musen MA. Medical Informatics: Searching for Underlying Components Methods of Information in Medicine. 41: 12-19. DOI: 10.1055/S-0038-1634307  0.362
2001 Noy NF, Sintek M, Decker S, Crubézy M, Fergerson RW, Musen MA. Creating semantic web contents with protégé-2000 Ieee Intelligent Systems and Their Applications. 16: 60-71. DOI: 10.1109/5254.920601  0.413
2000 Stead WW, Miller RA, Musen MA, Hersh WR. Integration and beyond: linking information from disparate sources and into workflow. Journal of the American Medical Informatics Association : Jamia. 7: 135-45. PMID 10730596 DOI: 10.1136/Jamia.2000.0070135  0.33
1999 Shahar Y, Chen H, Stites DP, Basso LV, Kaizer H, Wilson DM, Musen MA. Semi-automated entry of clinical temporal-abstraction knowledge. Journal of the American Medical Informatics Association : Jamia. 6: 494-511. PMID 10579607 DOI: 10.1136/Jamia.1999.0060494  0.365
1999 Oliver DE, Shahar Y, Shortliffe EH, Musen MA. Representation of change in controlled medical terminologies Artificial Intelligence in Medicine. 15: 53-76. PMID 9930616 DOI: 10.1016/S0933-3657(98)00045-1  0.351
1999 Musen MA. Scalable Software Architectures for Decision Support Methods of Information in Medicine. 38: 229-238. DOI: 10.1055/S-0038-1634422  0.392
1999 Musen MA, Fagan LM, Combs DM, Shortliffe EH. Use of a domain model to drive an interactive knowledge-editing tool International Journal of Human Computer Studies. 51: 479-495. DOI: 10.1006/ijhc.1987.0320  0.333
1998 Musen MA. Domain Ontologies in Software Engineering: Use of Protégé with the EON Architecture Methods of Information in Medicine. 37: 540-550. DOI: 10.1055/S-0038-1634543  0.398
1998 Gennari JH, Cheng H, Altman RB, Musen MA. Reuse, CORBA, and knowledge-based systems International Journal of Human Computer Studies. 49: 523-546. DOI: 10.1006/Ijhc.1998.0217  0.397
1998 TU S, MUSEN M. Episodic refinement of episodic skeletal-plan refinement International Journal of Human-Computer Studies. 48: 475-497. DOI: 10.1006/Ijhc.1997.0194  0.387
1997 Musen MA, Tu SW, Das AK, Shahar Y. EON: a component-based approach to automation of protocol-directed therapy. Journal of the American Medical Informatics Association : Jamia. 3: 367-88. PMID 8930854 DOI: 10.1136/Jamia.1996.97084511  0.362
1997 Gaines BR, Musen MA, Uthurusamy R, Haller S, McRoy S, Oard D, Hull D, Hauptmann A, Witbrock M, Mahesh K, Farquhar A, Gruninger M, Doyle JR, Thomason RH. AAAI 1997 Spring Symposium Reports Ai Magazine. 18: 81. DOI: 10.1609/Aimag.V18I3.1308  0.363
1996 Shahar Y, Musen MA. Knowledge-based temporal abstraction in clinical domains. Artificial Intelligence in Medicine. 8: 267-98. PMID 8830925 DOI: 10.1016/0933-3657(95)00036-4  0.357
1996 Rothenfluh TE, Gennari JH, Eriksson H, Puerta AR, Tu SW, Musen MA. Reusable ontologies, knowledge-acquisition tools, and performance systems: PROTE´GE´-II solutions to Sisyphus-2 International Journal of Human-Computer Studies \/ International Journal of Man-Machine Studies. 44: 303-332. DOI: 10.1006/Ijhc.1996.0017  0.41
1995 Musen MA, Wieckert KE, Miller ET, Campbell KE, Fagan LM. Development of a controlled medical terminology, Knowledge acquisition and knowledge representation Methods of Information in Medicine. 34: 85-95. PMID 9082143 DOI: 10.1055/S-0038-1634576  0.346
1995 Campbell KE, Das AK, Musen MA. A logical foundation for representation of clinical data. Journal of the American Medical Informatics Association : Jamia. 1: 218-32. PMID 7719805 DOI: 10.1136/Jamia.1994.95236154  0.342
1995 Tu SW, Eriksson H, Gennari JH, Shahar Y, Musen MA. Ontology-based configuration of problem-solving methods and generation of knowledge-acquisition tools: application of PROTEGE-II to protocol-based decision support. Artificial Intelligence in Medicine. 7: 257-89. PMID 7581625 DOI: 10.1016/0933-3657(95)00006-R  0.416
1995 Musen MA, Schreiber AT. Architectures for intelligent systems based on reusable components. Artificial Intelligence in Medicine. 7: 189-99. PMID 7581622 DOI: 10.1016/0933-3657(95)00003-O  0.385
1995 Musen MA, van der Lei J. The Separation of Reviewing Knowledge from Medical Knowledge Methods of Information in Medicine. 34: 131-139. DOI: 10.1055/S-0038-1634593  0.363
1995 Eriksson H, Shahar Y, Tu SW, Puerta AR, Musen MA. Task modeling with reusable problem-solving methods Artificial Intelligence. 79: 293-326. DOI: 10.1016/0004-3702(94)00040-9  0.355
1994 Henry SB, Borchelt D, Schreiner JG, Musen MA. A computer-based approach to quality improvement for telephone triage in a community AIDS clinic Nursing Administration Quarterly. 18: 65-73. DOI: 10.1097/00006216-199401000-00016  0.338
1994 Das AK, Musen MA. A Temporal Query System for Protocol-Directed Decision Support Methods of Information in Medicine. 33: 358-370. DOI: 10.1055/S-0038-1635036  0.346
1994 Eriksson H, Puerta AR, Musen MA. Generation of knowledge-acquisition tools from domain ontologies International Journal of Human-Computer Studies. 41: 425-453. DOI: 10.1006/Ijhc.1994.1067  0.432
1994 Gennari JH, Tu SW, Rothenfluh TE, Musen MA. Mapping domains to methods in support of reuse International Journal of Human - Computer Studies. 41: 399-424. DOI: 10.1006/Ijhc.1994.1066  0.366
1993 Eriksson H, Musen M. Metatools for knowledge acquisition Ieee Software. 10: 23-29. DOI: 10.1109/52.210598  0.413
1993 Eriksson H, Musen MA. Conceptual models for automatic generation of knowledge-acquisition tools The Knowledge Engineering Review. 8: 27-47. DOI: 10.1017/S0269888900000059  0.404
1993 Musen MA. There's no theory better than that of a practical tool The Knowledge Engineering Review. 8: 1-4. DOI: 10.1017/S0269888900000035  0.423
1993 Puerta AR, Tu SW, Musen MA. Modeling tasks with mechanisms International Journal of Intelligent Systems. 8: 129-152. DOI: 10.1002/Int.4550080109  0.392
1992 Musen MA. Dimensions of knowledge sharing and reuse. Computers and Biomedical Research, An International Journal. 25: 435-67. PMID 1395522 DOI: 10.1016/0010-4809(92)90003-S  0.427
1992 Shahar Y, Tu SW, Musen MA. Knowledge acquisition for temporal-abstraction mechanisms Knowledge Acquisition. 4: 217-236. DOI: 10.1016/1042-8143(92)90027-X  0.383
1992 Tu SW, Shahar Y, Dawes J, Winkles J, Puerta AR, Musen MA. A problem-solving model for episodic skeletal-plan refinement Knowledge Acquisition. 4: 197-216. DOI: 10.1016/1042-8143(92)90026-W  0.356
1992 Puerta AR, Egar JW, Tu SW, Musen MA. A multiple-method knowledge-acquisition shell for the automatic generation of knowledge-acquisition tools Knowledge Acquisition. 4: 171-196. DOI: 10.1016/1042-8143(92)90025-V  0.42
1992 Linster M, Musen MA. Use of KADS to create a conceptual model of the ONCOCIN task Knowledge Acquisition. 4: 55-87. DOI: 10.1016/1042-8143(92)90014-R  0.369
1991 van der Lei J, Musen MA. A model for critiquing based on automated medical records. Computers and Biomedical Research, An International Journal. 24: 344-78. PMID 1889202 DOI: 10.1016/0010-4809(91)90034-T  0.339
1989 Tu SW, Kahn MG, Musen MA, Fagan LM, Ferguson JC. Episodic Skeletal-Plan Refinement Based on Temporal Data Communications of the Acm. 32: 1439-1455. DOI: 10.1145/76380.76384  0.356
1989 Musen MA. Knowledge acquisition at the metalevel: creation of custom-tailored knowledge-acquisition tools Intelligence\/Sigart Bulletin. 108: 45-55. DOI: 10.1145/63266.63272  0.434
1989 Musen MA, van der Lei J. Knowledge Engineering for Clinical Consultation Programs: Modeling the Application Area Methods of Information in Medicine. 28: 28-35. DOI: 10.1055/S-0038-1635543  0.373
1989 Musen MA. Conceptual models of interactive knowledge acquisition tools Knowledge Acquisition. 1: 73-88. DOI: 10.1016/S1042-8143(89)80006-8  0.436
1989 Musen MA. Automated support for building and extending expert models Machine Learning. 4: 347-375. DOI: 10.1007/Bf00130719  0.392
1987 Walton JD, Musen MA, Combs DM, Lane CD, Shortliffe EH, Fagan LM. Graphical access to medical expert systems: III. Design of a knowledge acquisition environment. Methods of Information in Medicine. 26: 78-88. PMID 3670103 DOI: 10.1055/S-0038-1635497  0.332
Low-probability matches (unlikely to be authored by this person)
2012 Tao C, Noy NF, Solbrig HR, Shah NH, Musen MA, Chute CG. Proposed SKOS extensions for bioportal terminology services Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 7185: 342-349. DOI: 10.1007/978-3-642-29923-0_23  0.299
1993 Kemper CA, Lane NM, Carlson RW, Musen MA, Tu SW. A Methodology for Determining Patients’ Eligibility for Clinical Trials Methods of Information in Medicine. 32: 317-325. DOI: 10.1055/S-0038-1634933  0.299
2018 Tomczak A, Mortensen JM, Winnenburg R, Liu C, Alessi DT, Swamy V, Vallania F, Lofgren S, Haynes W, Shah NH, Musen MA, Khatri P. Interpretation of biological experiments changes with evolution of the Gene Ontology and its annotations. Scientific Reports. 8: 5115. PMID 29572502 DOI: 10.1038/S41598-018-23395-2  0.298
2012 Wu ST, Liu H, Li D, Tao C, Musen MA, Chute CG, Shah NH. Unified Medical Language System term occurrences in clinical notes: a large-scale corpus analysis. Journal of the American Medical Informatics Association : Jamia. 19: e149-56. PMID 22493050 DOI: 10.1136/Amiajnl-2011-000744  0.297
2006 Rubin DL, Dameron O, Bashir Y, Grossman D, Dev P, Musen MA. Using ontologies linked with geometric models to reason about penetrating injuries Artificial Intelligence in Medicine. 37: 167-176. PMID 16730959 DOI: 10.1016/J.Artmed.2006.03.006  0.294
1992 van der Lei J, Musen MA, van der Does E, Man in 't Veld AJ, van Bemmel JH. Comparison of computer-aided and human review of general practitioners' management of hypertension. Lancet (London, England). 338: 1504-8. PMID 1683929 DOI: 10.1016/0140-6736(91)92311-O  0.292
2015 Mortensen JM, Minty EP, Januszyk M, Sweeney TE, Rector AL, Noy NF, Musen MA. Using the wisdom of the crowds to find critical errors in biomedical ontologies: a study of SNOMED CT. Journal of the American Medical Informatics Association : Jamia. 22: 640-8. PMID 25342179 DOI: 10.1136/Amiajnl-2014-002901  0.292
1993 van der Does E, Man in ’t Veld AJ, Musen MA, van Bemmel JH, van der Lei J. Response of General Practitioners to Computer-Generated Critiques of Hypertension Therapy Methods of Information in Medicine. 32: 146-153. DOI: 10.1055/S-0038-1634911  0.29
2017 Lou Y, Tu SW, Nyulas C, Tudorache T, Chalmers RJ, Musen MA. Use of Ontology Structure and Bayesian Models to Aid the Crowdsourcing of ICD-11 Sanctioning Rules. Journal of Biomedical Informatics. PMID 28192233 DOI: 10.1016/J.Jbi.2017.02.004  0.289
2017 Martínez-Romero M, O'Connor MJ, Shankar RD, Panahiazar M, Willrett D, Egyedi AL, Gevaert O, Graybeal J, Musen MA. Fast and Accurate Metadata Authoring Using Ontology-Based Recommendations. Amia ... Annual Symposium Proceedings. Amia Symposium. 2017: 1272-1281. PMID 29854196  0.289
2008 Lee WN, Shah N, Sundlass K, Musen M. Comparison of ontology-based semantic-similarity measures. Amia ... Annual Symposium Proceedings / Amia Symposium. Amia Symposium. 384-8. PMID 18999312  0.288
2010 Noy N, Tudorache T, Nyulas C, Musen M. The ontology life cycle: Integrated tools for editing, publishing, peer review, and evolution of ontologies Amia ... Annual Symposium Proceedings / Amia Symposium. Amia Symposium. 2010: 552-556. PMID 21347039  0.288
2007 Moreira DA, Shah NH, Musen MA. Interpretation errors related to the GO annotation file format. Amia ... Annual Symposium Proceedings / Amia Symposium. Amia Symposium. 538-42. PMID 18693894  0.287
2017 Gonçalves RS, O'Connor MJ, Martínez-Romero M, Egyedi AL, Willrett D, Graybeal J, Musen MA. The CEDAR Workbench: An Ontology-Assisted Environment for Authoring Metadata that Describe Scientific Experiments. The Semantic Web--Iswc ... : ... International Semantic Web Conference ... Proceedings. International Semantic Web Conference. 10588: 103-110. PMID 32219223 DOI: 10.1007/978-3-319-68204-4_10  0.285
2003 Shankar RD, Tu SW, Musen MA. A knowledge-acquisition wizard to encode guidelines. Amia ... Annual Symposium Proceedings. Amia Symposium. 1007. PMID 14728510  0.284
1997 Ohno-Machado L, Musen MA. Sequential versus standard neural networks for pattern recognition: an example using the domain of coronary heart disease. Computers in Biology and Medicine. 27: 267-81. PMID 9303265 DOI: 10.1016/S0010-4825(97)00008-5  0.284
2008 Balduccini M, Baral C, Brodaric B, Colton S, Fox P, Gutelius D, Hinkelmann K, Horswill I, Huberman B, Hudlicka E, Lerman K, Lisetti C, McGuinness DL, Maher ML, Musen MA, et al. AAAI 2008 Spring Symposia Reports Ai Magazine. 29: 107. DOI: 10.1609/aimag.v29i3.2148  0.283
2011 Ghazvinian A, Noy NF, Musen MA. How orthogonal are the OBO Foundry ontologies? Journal of Biomedical Semantics. 2. DOI: 10.1186/2041-1480-2-S2-S2  0.283
2013 Tudorache T, Nyulas CI, Noy NF, Musen MA. Using semantic web in ICD-11: Three years down the road Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 8219: 195-211. DOI: 10.1007/978-3-642-41338-4_13  0.282
2003 Noy NF, Crubezy M, Fergerson RW, Knublauch H, Tu SW, Vendetti J, Musen MA. Protégé-2000: an open-source ontology-development and knowledge-acquisition environment Amia ... Annual Symposium Proceedings / Amia Symposium. Amia Symposium. 953. PMID 14728458  0.281
2011 Alexander PR, Nyulas C, Tudorache T, Whetzel PL, Noy NF, Musen MA. Semantic infrastructure to enable collaboration in ontology development Proceedings of the 2011 International Conference On Collaboration Technologies and Systems, Cts 2011. 423-430. DOI: 10.1109/CTS.2011.5928720  0.28
2015 Liu V, Musen MA, Chou T. Data breaches of protected health information in the United States. Jama. 313: 1471-3. PMID 25871675 DOI: 10.1001/Jama.2015.2252  0.279
2011 Ghazvinian A, Noy NF, Musen MA. From mappings to modules: Using mappings to identify domain-specific modules in large ontologies Kcap 2011 - Proceedings of the 2011 Knowledge Capture Conference. 33-40. DOI: 10.1145/1999676.1999684  0.277
2002 van Bemmel J, Musen M. Challenges for Medical Informatics as an Academic Discipline Methods of Information in Medicine. 41: 01-03. DOI: 10.1055/S-0038-1634305  0.276
1990 Cooper GF, Musen MA. The 1990 AAAI Spring Symposium on Artificial Intelligence in Medicine Artificial Intelligence in Medicine. 2: 293-298. DOI: 10.1016/0933-3657(90)90003-A  0.275
2010 LePendu P, Noy NF, Jonquet C, Alexander PR, Shah NH, Musen MA. Optimize first, buy later: Analyzing metrics to ramp-up very large knowledge bases Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 6496: 486-501. DOI: 10.1007/978-3-642-17746-0_31  0.271
2010 Tudorache T, Falconer S, Noy NF, Nyulas C, Üstün TB, Storey MA, Musen MA. Ontology development for the masses: Creating ICD-11 in WebProtégé Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 6317: 74-89. DOI: 10.1007/978-3-642-16438-5_6  0.27
2011 Hasman A, Ammenwerth E, Dickhaus H, Knaup P, Lovis C, Mantas J, Maojo V, Martin-Sanchez FJ, Musen M, Patel VL, Surjan G, Talmon JL, Sarkar IN. Biomedical informatics--a confluence of disciplines? Methods of Information in Medicine. 50: 508-24. PMID 22146914 DOI: 10.3414/Me11-06-0003  0.267
2006 Tu SW, Hrabak KM, Campbell JR, Glasgow J, Nyman MA, McClure R, McClay J, Abarbanel R, Mansfield JG, Martins SM, Goldstein MK, Musen MA. Use of declarative statements in creating and maintaining computer-interpretable knowledge bases for guideline-based care. Amia ... Annual Symposium Proceedings / Amia Symposium. Amia Symposium. 784-8. PMID 17238448  0.267
2023 Herr BW, Hardi J, Quardokus EM, Bueckle A, Chen L, Wang F, Caron AR, Osumi-Sutherland D, Musen MA, Börner K. Specimen, biological structure, and spatial ontologies in support of a Human Reference Atlas. Scientific Data. 10: 171. PMID 36973309 DOI: 10.1038/s41597-023-01993-8  0.267
2005 Dameron O, Rubin DL, Musen MA. Challenges in converting frame-based ontology into OWL: the Foundational Model of Anatomy case-study Amia ... Annual Symposium Proceedings / Amia Symposium. Amia Symposium. 181-185. PMID 16779026  0.266
2013 Salvadores M, Alexander PR, Musen MA, Noy NF. BioPortal as a Dataset of Linked Biomedical Ontologies and Terminologies in RDF Semantic Web. 4: 277-284. DOI: 10.3233/SW-2012-0086  0.266
2008 Noy NF, Tudorache T, de Coronado S, Musen MA. Developing biomedical ontologies collaboratively Amia ... Annual Symposium Proceedings / Amia Symposium. Amia Symposium. 520-524. PMID 18998901  0.266
2018 Geller J, Keloth VK, Musen MA. How Sustainable are Biomedical Ontologies? Amia ... Annual Symposium Proceedings. Amia Symposium. 2018: 470-479. PMID 30815087  0.264
2010 Tudorache T, Falconer S, Nyulas C, Storey MA, Ustün TB, Musen MA. Supporting the Collaborative Authoring of ICD-11 with WebProtégé. Amia ... Annual Symposium Proceedings / Amia Symposium. Amia Symposium. 2010: 802-6. PMID 21347089  0.264
2017 Kamdar MR, Walk S, Tudorache T, Musen MA. BiOnIC: A Catalog of User Interactions with Biomedical Ontologies. The Semantic Web--Iswc ... : ... International Semantic Web Conference ... Proceedings. International Semantic Web Conference. 10588: 130-138. PMID 29637199 DOI: 10.1007/978-3-319-68204-4_13  0.263
1997 Ohno-Machado L, Musen MA. Modular Neural Networks for Medical Prognosis: Quantifying the Benefits of Combining Neural Networks for Survival Prediction Connection Science. 9: 71-86. DOI: 10.1080/095400997116748  0.262
2011 Tudorache T, Noy NF, Falconer SM, Musen MA. A knowledge base driven user interface for collaborative ontology development International Conference On Intelligent User Interfaces, Proceedings Iui. 411-414. DOI: 10.1145/1943403.1943478  0.26
2004 Noy NF, Musen MA, Mejino JLV, Rosse C. Pushing the envelope: Challenges in a frame-based representation of human anatomy Data and Knowledge Engineering. 48: 335-359. DOI: 10.1016/j.datak.2003.06.002  0.258
2008 Shah NH, Shah N, Muse MA, Musen M. UMLS-Query: a perl module for querying the UMLS. Amia ... Annual Symposium Proceedings / Amia Symposium. Amia Symposium. 652-6. PMID 18998805  0.256
2022 Musen MA, O'Connor MJ, Schultes E, Martínez-Romero M, Hardi J, Graybeal J. Modeling community standards for metadata as templates makes data FAIR. Scientific Data. 9: 696. PMID 36371407 DOI: 10.1038/s41597-022-01815-3  0.256
2009 Ghazvinian A, Noy NF, Jonquet C, Shah N, Musen MA. What four million mappings can tell you about two hundred ontologies Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 5823: 229-242. DOI: 10.1007/978-3-642-04930-9_15  0.255
2006 Shah NH, Rubin DL, Supekar KS, Musen MA. Ontology-based annotation and query of tissue microarray data. Amia ... Annual Symposium Proceedings / Amia Symposium. Amia Symposium. 709-13. PMID 17238433  0.255
2017 Martinez-Romero M, Connor MJO, Shankar RD, Panahiazar M, Willrett D, Egyedi AL, Gevaert O, Graybeal J, Musen MA. CEDAR's predictive data entry: easier and faster creation of high-quality metadata F1000research. 6. DOI: 10.7490/F1000Research.1113785.1  0.254
2010 Tudorache T, Falconer S, Nyulas C, Noy NF, Musen MA. Will semantic web technologies work for the development of ICD-11? Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 6497: 257-272. DOI: 10.1007/978-3-642-17749-1_17  0.253
2013 Horridge M, Tudorache T, Vendetti J, Nyulas CI, Musen MA, Noy NF. Simplified OWL ontology editing for the web: Is WebProtégé enough? Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 8218: 200-215. DOI: 10.1007/978-3-642-41335-3_13  0.253
2002 Das AK, Musen MA. SYNCHRONUS: a reusable software module for temporal integration. Proceedings. Amia Symposium. 195-9. PMID 12463814  0.252
2015 Orlando JP, Musen MA, Moreira DA. User extensible system to identify problems in OWL ontologies and SWRL rules Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 9202: 112-126. DOI: 10.1007/978-3-319-21542-6_8  0.251
2013 Noy NF, Mortensen J, Alexander PR, Musen MA. Mechanical Turk as an ontology engineer? Using microtasks as a component of an ontology-engineering workflow Proceedings of the 3rd Annual Acm Web Science Conference, Websci 2013. 262-271. DOI: 10.1145/2464464.2464482  0.248
2013 Noy NF, Alexander PR, Harpaz R, Whetzel PL, Fergerson RW, Musen MA. Getting lucky in ontology search: A data-driven evaluation framework for ontology ranking Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 8218: 444-459. DOI: 10.1007/978-3-642-41335-3_28  0.247
2002 Musen M, van Bemmel J. Challenges for Medical Informatics as an Academic Discipline: Workshop Report Yearbook of Medical Informatics. 11: 194-198. DOI: 10.1055/S-0038-1638139  0.242
2008 Supekar K, Menon V, Rubin D, Musen M, Greicius MD. Network analysis of intrinsic functional brain connectivity in Alzheimer's disease. Plos Computational Biology. 4: e1000100. PMID 18584043 DOI: 10.1371/Journal.Pcbi.1000100  0.241
2015 Lamprecht D, Strohmaier M, Helic D, Nyulas C, Tudorache T, Noy NF, Musen MA. Using ontologies to model human navigation behavior in information networks: A study based on Wikipedia Semantic Web. 6: 403-422. DOI: 10.3233/SW-140143  0.241
2013 Wang H, Tudorache T, Dou D, Noy NF, Musen MA. Analysis of user editing patterns in ontology development projects Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 8185: 470-487. DOI: 10.1007/978-3-642-41030-7_34  0.24
2015 Guarino N, Musen MA. Ten years of Applied Ontology Applied Ontology. 10: 169-170. DOI: 10.3233/Ao-150160  0.239
1993 Shahar Y, Musen MA. RESUME: a temporal-abstraction system for patient monitoring. Computers and Biomedical Research, An International Journal. 26: 255-73. PMID 8325005 DOI: 10.1006/cbmr.1993.1018  0.239
2017 Kamdar MR, Musen MA. Mechanism-based Pharmacovigilance over the Life Sciences Linked Open Data Cloud. Amia ... Annual Symposium Proceedings. Amia Symposium. 2017: 1014-1023. PMID 29854169  0.238
2010 Parai GK, Jonquet C, Xu R, Musen MA, Shah NH. The Lexicon Builder Web service: Building Custom Lexicons from two hundred Biomedical Ontologies. Amia ... Annual Symposium Proceedings / Amia Symposium. Amia Symposium. 2010: 587-91. PMID 21347046  0.235
2022 Baranzini SE, Börner K, Morris J, Nelson CA, Soman K, Schleimer E, Keiser M, Musen M, Pearce R, Reza T, Smith B, Herr BW, Oskotsky B, Rizk-Jackson A, Rankin KP, et al. A biomedical open knowledge network harnesses the power of AI to understand deep human biology. Ai Magazine. 43: 46-58. PMID 36093122 DOI: 10.1002/aaai.12037  0.235
2007 Eriksson H, Tu SW, Musen M. Semantic clinical guideline documents. Amia ... Annual Symposium Proceedings. Amia Symposium. 236-40. PMID 16779037  0.234
2009 Noy NF, Musen MA. Traversing ontologies to extract views Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 5445: 245-260. DOI: 10.1007/978-3-642-01907-4_11  0.233
2013 Mortensen JM, Musen MA, Noy NF. Crowdsourcing the verification of relationships in biomedical ontologies Amia ... Annual Symposium Proceedings / Amia Symposium. Amia Symposium. 2013: 1020-1029. PMID 24551391  0.232
2009 Supekar K, Musen M, Menon V. Development of large-scale functional brain networks in children. Plos Biology. 7: e1000157. PMID 19621066 DOI: 10.1016/S1053-8119(09)70984-X  0.231
2005 Rubin DL, Bashir Y, Grossman D, Dev P, Musen MA. Using an ontology of human anatomy to inform reasoning with geometric models. Studies in Health Technology and Informatics. 111: 429-35. PMID 15718773  0.231
2007 Supekar K, Musen M. Ontology metadata to support the building of a library of biomedical ontologies. Amia ... Annual Symposium Proceedings. Amia Symposium. 1126. PMID 16779413  0.23
1989 Musen MA. An editor for the conceptual models of interactive knowledge-acquisition tools International Journal of Man-Machine Studies. 31: 673-698. DOI: 10.1016/0020-7373(89)90021-7  0.228
2021 van Reisen M, Oladipo F, Stokmans M, Mpezamihgo M, Folorunso S, Schultes E, Basajja M, Aktau A, Amare SY, Taye GT, Purnama Jati PH, Chindoza K, Wirtz M, Ghardallou M, van Stam G, ... ... Musen MA, et al. Design of a FAIR digital data health infrastructure in Africa for COVID-19 reporting and research. Advanced Genetics (Hoboken, N.J.). 2: e10050. PMID 34514430 DOI: 10.1002/ggn2.10050  0.228
2002 O'Connor MJ, Tu SW, Musen MA. The Chronus II temporal database mediator. Proceedings. Amia Symposium. 567-71. PMID 12474882  0.227
2013 Strohmaier M, Walk S, Pöschko J, Lamprecht D, Tudorache T, Nyulas C, Musen MA, Noy NF. How ontologies are made: Studying the hidden social dynamics behind collaborative ontology engineering projects Journal of Web Semantics. 20: 18-34. DOI: 10.1016/j.websem.2013.04.001  0.227
2006 Musen MA, Lewis S, Smith B. Wrestling with SUMO and bio-ontologies. Nature Biotechnology. 24: 21; author reply 23. PMID 16404381 DOI: 10.1038/Nbt0106-21B  0.226
1992 Musen MA. Overcoming the limitations of role-limiting methods Knowledge Acquisition. 4: 165-170. DOI: 10.1016/1042-8143(92)90024-U  0.226
2002 Meric F, Singletary SE, Bernstam EV, Mirza NQ, Hunt KK, Ames FC, Ross MI, Kuerer HM, Pollock RE, Musen MA. Breast cancer on the world wide web: Cross sectional survey of quality of information and popularity of websites British Medical Journal. 324: 577-581. PMID 11884322 DOI: 10.1136/Bmj.324.7337.577  0.225
2012 Ochs C, Agrawal A, Perl Y, Halper M, Tu SW, Carini S, Sim I, Noy N, Musen M, Geller J. Deriving an abstraction network to support quality assurance in OCRe. Amia ... Annual Symposium Proceedings / Amia Symposium. Amia Symposium. 2012: 681-9. PMID 23304341  0.222
2011 Brochhausen M, Burgun A, Ceusters W, Hasman A, Leong TY, Musen M, Oliveira JL, Peleg M, Rector A, Schulz S. Discussion of “Biomedical Ontologies: Toward Scientific Debate” Methods of Information in Medicine. 50: 217-236. DOI: 10.1055/S-0038-1625243  0.221
2015 Kamdar MR, Tudorache T, Musen MA. Investigating Term Reuse and Overlap in Biomedical Ontologies. Ceur Workshop Proceedings. 1515. PMID 29636656  0.221
2010 Tirrell R, Evani U, Berman AE, Mooney SD, Musen MA, Shah NH. An ontology-neutral framework for enrichment analysis. Amia ... Annual Symposium Proceedings / Amia Symposium. Amia Symposium. 2010: 797-801. PMID 21347088  0.218
1987 Musen MA, Fagan LM, Combs DM, Shortliffe EH. Use of a domain model to drive an interactive knowledge-editing tool International Journal of Man-Machine Studies. 26: 105-121. DOI: 10.1016/S0020-7373(87)80039-1  0.218
2003 Advani A, Goldstein M, Shahar Y, Musen MA. Developing quality indicators and auditing protocols from formal guideline models: knowledge representation and transformations. Amia ... Annual Symposium Proceedings. Amia Symposium. 11-5. PMID 14728124  0.215
2023 Morris JH, Soman K, Akbas RE, Zhou X, Smith B, Meng EC, Huang CC, Cerono G, Schenk G, Rizk-Jackson A, Harroud A, Sanders L, Costes SV, Bharat K, Chakraborty A, ... ... Musen M, et al. The scalable precision medicine open knowledge engine (SPOKE): A massive knowledge graph of biomedical information. Bioinformatics (Oxford, England). PMID 36759942 DOI: 10.1093/bioinformatics/btad080  0.206
2022 Musen MA. Without appropriate metadata, data-sharing mandates are pointless. Nature. 609: 222. PMID 36064801 DOI: 10.1038/d41586-022-02820-7  0.203
2009 Ghazvinian A, Noy NF, Musen MA. Creating mappings for ontologies in biomedicine: simple methods work Amia ... Annual Symposium Proceedings / Amia Symposium. Amia Symposium. 2009: 198-202. PMID 20351849  0.2
2020 Miron L, Gonçalves RS, Musen MA. Obstacles to the reuse of study metadata in ClinicalTrials.gov. Scientific Data. 7: 443. PMID 33339830 DOI: 10.1038/s41597-020-00780-z  0.199
2009 Supekar K, Uddin L, Keller K, Amin H, Musen M, Greicius M, Menon V. Immature default mode network in young children: Evidence from combined resting state fMRI and diffusion tensor imaging analysis Neuroimage. 47: S82. DOI: 10.1016/S1053-8119(09)70593-2  0.199
2012 Mortensen JM, Horridge M, Musen MA, Noy NF. Applications of ontology design patterns in biomedical ontologies Amia ... Annual Symposium Proceedings / Amia Symposium. Amia Symposium. 2012: 643-652. PMID 23304337  0.196
2009 He Y, Cowell L, Diehl AD, Mobley H, Peters B, Ruttenberg A, Scheuermann RH, Brinkman RR, Courtot M, Mungall C, Xiang Z, Chen F, Todd T, Colby L, Rush H, ... ... Musen MA, et al. VO: Vaccine Ontology Nature Precedings. 4: 1-1. DOI: 10.1038/Npre.2009.3552.1  0.192
2008 Musen MA, Musen M, Shah NH, Shah N, Noy NF, Noy N, Dai BY, Dai B, Dorf M, Dorf M, Griffith N, Griffith N, Buntrok J, Buntrock JD, Jonquet C, et al. BioPortal: ontologies and data resources with the click of a mouse. Amia ... Annual Symposium Proceedings / Amia Symposium. Amia Symposium. 1223-4. PMID 18999306  0.192
2017 Kamdar MR, Musen MA. PhLeGrA: Graph Analytics in Pharmacology over the Web of Life Sciences Linked Open Data. Proceedings of the ... International World-Wide Web Conference. International Www Conference. 2017: 321-329. PMID 29479581 DOI: 10.1145/3038912.3052692  0.191
2002 Advani A, Goldstein M, Musen MA. A framework for evidence-adaptive quality assessment that unifies guideline-based and performance-indicator approaches. Proceedings. Amia Symposium. 2-6. PMID 12463775  0.191
2005 Musen MA. Protégé: Community is Everything International Journal of Human-Computer Studies. 62: 545-552. DOI: 10.1016/J.Ijhcs.2005.03.002  0.19
1996 Rothenfluh TE, Gennari JH, Eriksson H, Puerta AR, Tu SW, Musen MA. Reusable ontologies, knowledge-acquisition tools, and performance systems: PROTÉGÉ-II solutions to Sisyphus-2 International Journal of Human Computer Studies. 44: 303-332.  0.19
2007 Alani H, Noy NF, Shah N, Shadbolt N, Musen MA. Searching ontologies based on content: Experiments in the biomedical domain K-Cap'07: Proceedings of the Fourth International Conference On Knowledge Capture. 55-62. DOI: 10.1145/1298406.1298418  0.186
2003 van Bemmel J, Musen M. A Discipline Coming of Age Yearbook of Medical Informatics. 12: 209-210. DOI: 10.1055/S-0038-1638163  0.186
2021 Maitra A, Kamdar MR, Zulman DM, Haverfield MC, Brown-Johnson C, Schwartz R, Israni ST, Verghese A, Musen MA. Using ethnographic methods to classify the human experience in medicine: a case study of the presence ontology. Journal of the American Medical Informatics Association : Jamia. PMID 34151988 DOI: 10.1093/jamia/ocab091  0.186
2017 Leung TI, Goldstein MK, Musen MA, Cronkite R, Chen JH, Gottlieb A, Leitersdorf E. The New HIT: Human Health Information Technology. Studies in Health Technology and Informatics. 245: 768-772. PMID 29295202  0.175
2003 Tu SW, Campbell J, Musen MA. The structure of guideline recommendations: a synthesis. Amia ... Annual Symposium Proceedings. Amia Symposium. 679-83. PMID 14728259  0.175
2004 Rubin DL, Bashir Y, Grossman D, Dev P, Musen MA. Linking ontologies with three-dimensional models of anatomy to predict the effects of penetrating injuries. Conference Proceedings : ... Annual International Conference of the Ieee Engineering in Medicine and Biology Society. Ieee Engineering in Medicine and Biology Society. Annual Conference. 5: 3128-31. PMID 17270942 DOI: 10.1109/IEMBS.2004.1403883  0.173
2015 Leung TI, Jalal H, Zulman DM, Dumontier M, Owens DK, Musen MA, Goldstein MK. Automating Identification of Multiple Chronic Conditions in Clinical Practice Guidelines. Amia Joint Summits On Translational Science Proceedings Amia Summit On Translational Science. 2015: 456-60. PMID 26306285  0.171
2005 Rubin DL, Dameron O, Musen MA. Use of description logic classification to reason about consequences of penetrating injuries Amia ... Annual Symposium Proceedings / Amia Symposium. Amia Symposium. 649-653. PMID 16779120  0.169
2021 Kamdar MR, Musen MA. An empirical meta-analysis of the life sciences linked open data on the web. Scientific Data. 8: 24. PMID 33479214 DOI: 10.1038/s41597-021-00797-y  0.164
2020 Sustkova HP, Hettne KM, Wittenburg P, Jacobsen A, Kuhn T, Pergl R, Slifka J, McQuilton P, Magagna B, Sansone S, Stocker M, Imming M, Lannom L, Musen M, Schultes E. FAIR Convergence Matrix: Optimizing the Reuse of Existing FAIR-Related Resources Data Intelligence. 2: 158-170. DOI: 10.1162/dint_a_00038  0.164
2010 Xu R, Musen MA, Shah NH. A Comprehensive Analysis of Five Million UMLS Metathesaurus Terms Using Eighteen Million MEDLINE Citations. Amia ... Annual Symposium Proceedings / Amia Symposium. Amia Symposium. 2010: 907-11. PMID 21347110  0.163
2014 Mortensen JM, Musen MA, Noy NF. An empirically derived taxonomy of errors in SNOMED CT Amia ... Annual Symposium Proceedings / Amia Symposium. Amia Symposium. 2014: 899-906. PMID 25954397  0.162
2004 Advani A, Jones N, Shahar Y, Goldstein MK, Musen MA. An intelligent case-adjustment algorithm for the automated design of population-based quality auditing protocols. Studies in Health Technology and Informatics. 107: 1003-7. PMID 15360963  0.152
2003 Fensel D, Motta E, van Harmelen F, Benjamins VR, Crubezy M, Decker S, Gaspari M, Not Available NA, Groenboom R, Grosso W, Musen M, Plaza E, Schreiber G, Studer R, Wielinga B. The Unified Problem-Solving Method Development Language UPML Knowledge and Information Systems. 5: 83-131. DOI: 10.1007/s10115-002-0074-5  0.147
2020 Chiang J, Kumar A, Morales D, Saini D, Hom J, Shieh L, Musen M, Goldstein MK, Chen JH. Physician Usage and Acceptance of a Machine Learning Recommender System for Simulated Clinical Order Entry. Amia Joint Summits On Translational Science Proceedings. Amia Joint Summits On Translational Science. 2020: 89-97. PMID 32477627  0.145
2006 Rubin DL, Grossman D, Neal M, Cook DL, Bassingthwaighte JB, Musen MA. Ontology-based representation of simulation models of physiology. Amia ... Annual Symposium Proceedings / Amia Symposium. Amia Symposium. 664-8. PMID 17238424  0.144
1993 Musen MA. Architectures for Architects Methods of Information in Medicine. 32: 12-13. DOI: 10.1055/s-0038-1634899  0.14
2015 Tu SW, Nyulas CI, Tudorache T, Musen MA. A Method to Compare ICF and SNOMED CT for Coverage of U.S. Social Security Administration's Disability Listing Criteria. Amia ... Annual Symposium Proceedings. Amia Symposium. 2015: 1224-33. PMID 26958262  0.124
2001 Fensel D, Musen M. The semantic web: a brain for humankind Ieee Intelligent Systems. 16: 24-25. DOI: 10.1109/MIS.2001.920595  0.122
2020 Kumar A, Aikens RC, Hom J, Shieh L, Chiang J, Morales D, Saini D, Musen M, Baiocchi M, Altman R, Goldstein MK, Asch S, Chen JH. OrderRex clinical user testing: a randomized trial of recommender system decision support on simulated cases. Journal of the American Medical Informatics Association : Jamia. PMID 33106874 DOI: 10.1093/jamia/ocaa190  0.12
1999 Nguyen JH, Shahar Y, Tu SW, Das AK, Musen MA. Journal of Intelligent Information Systems. 13: 121-145. DOI: 10.1023/A:1008711006591  0.12
1989 Musen MA. Machine Learning. 4: 347-375. DOI: 10.1023/A:1022610907777  0.12
2017 Tso GJ, Tu SW, Musen MA, Goldstein MK. High-Risk Drug-Drug Interactions Between Clinical Practice Guidelines for Management of Chronic Conditions. Amia Joint Summits On Translational Science Proceedings. Amia Joint Summits On Translational Science. 2017: 531-539. PMID 28815153  0.119
2007 Musen MA. Technology for building intelligent systems: from psychology to engineering. Nebraska Symposium On Motivation. Nebraska Symposium On Motivation. 52: 145-84. PMID 17682334  0.1
2019 O'Connor MJ, Warzel DB, Martínez-Romero M, Hardi J, Willrett D, Egyedi AL, Eftekhari A, Graybeal J, Musen MA. Unleashing the value of Common Data Elements through the CEDAR Workbench. Amia ... Annual Symposium Proceedings. Amia Symposium. 2019: 681-690. PMID 32308863  0.098
2020 Tu SW, Nyulas CI, Tudorache T, Musen MA, Martinuzzi A, van Gool C, Mea VD, Chute CG, Frattura L, Hardiker N, Napel HT, Madden R, Almborg AH, Ginige JA, Sykes C, et al. Toward a Harmonized WHO Family of International Classifications Content Model. Studies in Health Technology and Informatics. 270: 1409-1410. PMID 32570683 DOI: 10.3233/SHTI200466  0.094
1989 Musen MA. The Strained Quality of Medical Data Methods of Information in Medicine. 28: 123-125. DOI: 10.1055/s-0038-1635561  0.09
2000 Stead WW, Miller RA, Musen MA, Hersh WR. Integration and beyond: panel discussion. Journal of the American Medical Informatics Association : Jamia. 7: 146-8. PMID 10730597 DOI: 10.1136/Jamia.2000.0070146  0.085
1999 van der Lei J, Moorman PW, Musen MA. Electronic Patient Records in Medical Practice: A Multidisciplinary Endeavor Methods of Information in Medicine. 38: 287-288. DOI: 10.1055/S-0038-1634416  0.078
2015 Musen MA. The Protégé Project: A Look Back and a Look Forward. Ai Matters. 1: 4-12. PMID 27239556 DOI: 10.1145/2757001.2757003  0.07
2010 O'Connor MJ, Halaschek-Wiener C, Musen MA. Mapping master: A flexible approach for mapping spreadsheets to OWL Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 6497: 194-208. DOI: 10.1007/978-3-642-17749-1_13  0.07
1998 Frisse ME, Musen MA, Slack WV, Stead WW. How should we organize to do informatics? Report of the ACMI Debate at the 1997 AMIA Fall Symposium. Journal of the American Medical Informatics Association : Jamia. 5: 293-304. PMID 9609499 DOI: 10.1136/jamia.1998.0050293  0.069
1994 Egar J, Musen M. Graph-grammar assistance for automated generation of influence diagrams Ieee Transactions On Systems, Man, and Cybernetics. 24: 1625-1642. DOI: 10.1109/21.328912  0.056
1996 Musen MA, Barnett EA. The Road to Professionalism in Medical Informatics: The Role of Training Methods of Information in Medicine. 35: 148-151. DOI: 10.1055/s-0038-1634652  0.056
2015 Ochs C, Perl Y, Geller J, Musen M. Using aggregate taxonomies to summarize SNOMED CT evolution Proceedings - 2015 Ieee International Conference On Bioinformatics and Biomedicine, Bibm 2015. 1008-1015. DOI: 10.1109/BIBM.2015.7359822  0.027
1995 Gennari JH, Altman RB, Musen MA. Reuse with PROTÉGÉ-II Acm Sigsoft Software Engineering Notes. 20: 72-80. DOI: 10.1145/223427.316710  0.022
1995 Gennari JH, Altman RB, Musen MA. Reuse with protege-II: from elevators to ribosomes Acm Sigsoft Symposium On Software Reusability - Ssr. 72-80.  0.021
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